Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46948 * 2 1 4 4 C 1.46498 * 119.99779 * 270.00083 * 3 2 1 5 5 C 1.50699 * 109.46991 * 269.99525 * 4 3 2 6 6 H 1.08002 * 119.99716 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99990 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00365 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47346 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47164 * 120.00309 * 9 7 5 12 12 H 1.48500 * 109.47161 * 239.99724 * 9 7 5 13 13 C 1.34777 * 120.00207 * 89.99497 * 3 2 1 14 14 S 1.71194 * 119.99989 * 179.97438 * 13 3 2 15 15 N 1.34781 * 119.99902 * 0.02562 * 13 3 2 16 16 C 1.46498 * 119.99942 * 174.97956 * 15 13 3 17 17 C 1.53002 * 109.46858 * 244.45847 * 16 15 13 18 18 C 1.52997 * 117.49950 * 351.79844 * 17 16 15 19 19 C 1.53005 * 117.49847 * 60.45783 * 17 16 15 20 20 C 1.53000 * 109.47186 * 124.46005 * 16 15 13 21 21 C 1.52997 * 117.49697 * 7.62722 * 20 16 15 22 22 C 1.52997 * 117.49893 * 298.96189 * 20 16 15 23 23 H 1.09003 * 109.47346 * 60.00411 * 1 2 3 24 24 H 1.09001 * 109.46819 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47376 * 299.99669 * 1 2 3 26 26 H 1.09001 * 109.47456 * 239.99799 * 2 1 3 27 27 H 1.09003 * 109.47346 * 119.99589 * 2 1 3 28 28 H 1.09000 * 109.47193 * 29.99674 * 4 3 2 29 29 H 1.08997 * 109.47422 * 149.99899 * 4 3 2 30 30 H 0.96994 * 120.00025 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99569 * 354.97570 * 15 13 3 32 32 H 1.09003 * 109.47052 * 4.45702 * 16 15 13 33 33 H 1.08997 * 115.55183 * 206.12154 * 17 16 15 34 34 H 1.09000 * 117.49889 * 214.99983 * 18 17 16 35 35 H 1.09002 * 117.50209 * 0.02562 * 18 17 16 36 36 H 1.09001 * 117.49998 * 359.97438 * 19 17 16 37 37 H 1.08997 * 117.50070 * 144.97530 * 19 17 16 38 38 H 1.08997 * 115.54399 * 153.29655 * 20 16 15 39 39 H 1.08998 * 117.50103 * 359.97438 * 21 20 16 40 40 H 1.09002 * 117.49931 * 145.02623 * 21 20 16 41 41 H 1.08996 * 117.50239 * 214.98079 * 22 20 16 42 42 H 1.09000 * 117.49632 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2304 -1.0960 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1274 -3.6171 9 14 5.9134 2.0966 -3.4169 10 1 6.6004 1.2397 -2.4175 11 1 5.9205 1.4184 -4.7380 12 1 6.6215 3.3974 -3.5246 13 6 2.2428 2.0167 1.1672 14 16 2.8140 3.6305 1.1671 15 7 2.0186 1.3812 2.3344 16 6 2.3659 2.0310 3.6007 17 6 3.4720 1.2345 4.2959 18 6 3.8544 -0.1184 3.6924 19 6 4.8012 1.0765 3.5549 20 6 1.1312 2.0832 4.5026 21 6 -0.1167 1.3309 4.0361 22 6 -0.0838 2.8607 3.9926 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5816 1.6876 -2.0284 29 1 2.0954 3.1410 -1.1385 30 1 3.6757 3.5178 -4.4430 31 1 1.6272 0.4937 2.3360 32 1 2.7161 3.0445 3.4049 33 1 3.5091 1.3302 5.3810 34 1 4.1430 -0.9129 4.3806 35 1 3.3183 -0.4410 2.7999 36 1 4.8876 1.5395 2.5719 37 1 5.7128 1.0684 4.1524 38 1 1.3322 2.1095 5.5736 39 1 -0.0582 0.7990 3.0865 40 1 -0.7371 0.8626 4.8003 41 1 -0.6825 3.3981 4.7280 42 1 -0.0033 3.3354 3.0146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734758600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = 74.753762 kcal Electronic energy + Delta-G solvation = -21139.308567 eV Core-core repulsion = 18247.635795 eV Total energy + Delta-G solvation = -2891.672772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95861 -37.81148 -36.31330 -33.97771 -32.69794 -30.93708 -28.35375 -26.65233 -24.32717 -23.19113 -22.53481 -22.23157 -21.13424 -20.52517 -20.02608 -17.65731 -16.64761 -16.43549 -16.21688 -15.24997 -14.80771 -14.61253 -14.25167 -13.92199 -13.74172 -13.41251 -13.15187 -12.29490 -12.16555 -11.96108 -11.83543 -11.61092 -11.40881 -11.33376 -11.31359 -11.00279 -10.81633 -10.69489 -10.59741 -10.37893 -10.19913 -10.09900 -9.94939 -9.76389 -9.59706 -8.42938 -8.18614 -6.87738 -6.30401 -6.03226 -4.06375 2.22244 2.75506 3.32109 3.35208 3.41123 3.44437 3.78822 3.87306 3.92537 4.45973 4.46878 4.85412 4.90317 4.95794 5.03315 5.06611 5.12314 5.22264 5.32988 5.33648 5.37891 5.50622 5.62148 5.66959 5.72492 5.81695 5.91045 5.95722 6.04066 6.10728 6.17622 6.21731 6.24229 6.37761 6.56687 6.80247 7.23008 7.52248 7.60956 7.92672 8.03189 8.17856 8.92419 9.56287 11.05503 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.005915 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.318606 B = 4732.593084 C = 5159.154177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 N -0.540 5.540 4 C 0.238 3.762 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.281 1.281 13 C 0.565 3.435 14 S -0.656 6.656 15 N -0.697 5.697 16 C 0.188 3.812 17 C -0.157 4.157 18 C -0.182 4.182 19 C -0.169 4.169 20 C -0.154 4.154 21 C -0.184 4.184 22 C -0.169 4.169 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.263 0.737 31 H 0.390 0.610 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 -9.032 15.185 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.039 4.039 3 N -0.244 5.244 4 C 0.120 3.880 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.207 1.207 13 C 0.205 3.795 14 S -0.526 6.526 15 N -0.333 5.333 16 C 0.082 3.918 17 C -0.177 4.177 18 C -0.219 4.219 19 C -0.206 4.206 20 C -0.173 4.173 21 C -0.221 4.221 22 C -0.206 4.206 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.229 0.771 32 H 0.163 0.837 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.870 -7.894 14.912 17.864 hybrid contribution 0.493 -1.592 -0.358 1.705 sum -5.377 -9.486 14.554 18.186 Atomic orbital electron populations 1.22224 0.95496 1.02178 1.02972 1.21737 0.94500 0.84186 1.03430 1.47846 1.57811 1.12033 1.06739 1.19922 0.97146 0.95683 0.75265 1.21154 0.96079 1.32083 1.06121 0.92614 1.24820 0.97663 0.94749 0.96324 1.69927 1.35555 1.33192 1.14309 0.86437 0.84774 0.78117 0.78041 1.19930 1.21194 1.20736 1.22256 0.82199 0.93638 0.81360 1.93113 1.66580 0.99209 1.93700 1.45113 1.64263 1.19505 1.04416 1.20559 0.91211 1.00471 0.79591 1.22659 0.96906 0.99259 0.98834 1.22903 1.04736 0.91489 1.02804 1.22990 0.93118 1.01458 1.03010 1.22621 0.89418 1.05830 0.99427 1.22935 1.01110 0.95441 1.02640 1.22959 1.00517 0.93557 1.03533 0.91277 0.91434 0.92867 0.88409 0.91955 0.94738 0.90398 0.92755 0.77082 0.83714 0.87073 0.89214 0.89467 0.87823 0.88998 0.86973 0.89348 0.89109 0.88960 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.09 1.29 5.85 -4.04 -0.02 1.26 16 3 N -0.54 -10.54 2.46 -177.08 -0.43 -10.98 16 4 C 0.24 5.92 4.92 -5.20 -0.03 5.89 16 5 C -0.52 -14.11 9.39 -34.44 -0.32 -14.44 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 C 0.56 10.84 7.69 -86.91 -0.67 10.17 16 14 S -0.66 -15.68 26.32 -107.50 -2.83 -18.51 16 15 N -0.70 -9.97 2.54 -55.52 -0.14 -10.11 16 16 C 0.19 2.50 2.94 -67.93 -0.20 2.30 16 17 C -0.16 -1.85 5.71 -90.62 -0.52 -2.36 16 18 C -0.18 -2.11 9.82 -26.69 -0.26 -2.37 16 19 C -0.17 -2.29 10.18 -26.69 -0.27 -2.56 16 20 C -0.15 -1.67 5.71 -90.62 -0.52 -2.19 16 21 C -0.18 -1.87 9.78 -26.69 -0.26 -2.13 16 22 C -0.17 -1.96 10.19 -26.69 -0.27 -2.24 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.63 7.52 -51.93 -0.39 0.24 16 26 H 0.10 1.49 8.07 -51.93 -0.42 1.07 16 27 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 28 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.08 2.22 6.58 -51.93 -0.34 1.87 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.39 4.77 4.26 -40.82 -0.17 4.60 16 32 H 0.15 2.43 5.81 -47.06 -0.27 2.16 16 33 H 0.11 1.09 8.01 -51.93 -0.42 0.67 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.07 6.38 -51.93 -0.33 0.74 16 36 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.11 1.03 8.00 -51.93 -0.42 0.61 16 39 H 0.09 0.94 5.62 -51.93 -0.29 0.65 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -31.57 349.30 -12.22 -43.79 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.73 Total: 7.58 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.06 Total: -8.55 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.16 Total: -46.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -15.68 SS G_CDS: -2.83 Total: -18.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.57 -12.22 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734758600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.540 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds