Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.82280 * 2 1 4 4 C 1.54375 * 109.83413 * 120.98288 * 2 1 3 5 5 C 1.55306 * 102.25497 * 140.87261 * 4 2 1 6 6 C 1.54945 * 100.93984 * 325.86386 * 5 4 2 7 7 H 1.09002 * 110.39531 * 277.48592 * 6 5 4 8 8 C 1.53001 * 110.30802 * 155.36164 * 6 5 4 9 9 C 1.53006 * 109.46931 * 177.83557 * 8 6 5 10 10 C 1.50701 * 109.46990 * 179.97438 * 9 8 6 11 11 O 1.20829 * 119.99852 * 0.02562 * 10 9 8 12 12 O 1.34225 * 119.99779 * 179.72495 * 10 9 8 13 13 C 1.45206 * 116.99929 * 180.27911 * 12 10 9 14 14 C 1.52998 * 109.47230 * 180.02562 * 13 12 10 15 15 C 1.50697 * 115.55145 * 39.88619 * 14 13 12 16 16 H 1.07997 * 120.00581 * 264.97688 * 15 14 13 17 17 C 1.37878 * 119.99728 * 84.97272 * 15 14 13 18 18 N 1.31522 * 120.00186 * 358.50652 * 17 15 14 19 19 Si 1.86802 * 120.00231 * 178.50802 * 17 15 14 20 20 H 1.48507 * 109.46685 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47365 * 119.99678 * 19 17 15 22 22 H 1.48497 * 109.47146 * 240.00401 * 19 17 15 23 23 C 1.53001 * 117.49726 * 254.18270 * 14 13 12 24 24 C 1.52998 * 117.49574 * 185.56117 * 14 13 12 25 25 O 1.43238 * 109.83111 * 239.11846 * 2 1 3 26 26 H 1.09000 * 109.46897 * 179.43155 * 1 2 3 27 27 H 1.09006 * 109.46859 * 299.42813 * 1 2 3 28 28 H 1.08999 * 109.47707 * 59.43234 * 1 2 3 29 29 H 1.09003 * 110.84977 * 259.05917 * 4 2 1 30 30 H 1.09004 * 110.84811 * 22.67834 * 4 2 1 31 31 H 1.09005 * 111.12378 * 207.95112 * 5 4 2 32 32 H 1.08992 * 111.12528 * 83.78429 * 5 4 2 33 33 H 1.08997 * 109.47071 * 57.83802 * 8 6 5 34 34 H 1.09002 * 109.46956 * 297.83448 * 8 6 5 35 35 H 1.08997 * 109.47043 * 60.00228 * 9 8 6 36 36 H 1.08994 * 109.47305 * 299.99983 * 9 8 6 37 37 H 1.09003 * 109.46655 * 299.99939 * 13 12 10 38 38 H 1.09006 * 109.47118 * 59.99613 * 13 12 10 39 39 H 0.96992 * 120.00163 * 180.02562 * 18 17 15 40 40 H 1.09003 * 117.49992 * 359.97438 * 23 14 13 41 41 H 1.09000 * 117.49938 * 145.01830 * 23 14 13 42 42 H 1.09008 * 117.49461 * 214.97496 * 24 14 13 43 43 H 1.09003 * 117.50545 * 359.97177 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7476 1.2450 5 6 3.2731 -1.5226 0.6754 6 6 2.7747 -1.8438 -0.7562 7 1 2.1406 -2.7303 -0.7477 8 6 3.9626 -2.0507 -1.6980 9 6 3.4501 -2.4193 -3.0918 10 6 4.6201 -2.6225 -4.0197 11 8 5.7481 -2.4869 -3.6083 12 8 4.4092 -2.9599 -5.3016 13 6 5.5830 -3.1454 -6.1361 14 6 5.1468 -3.5231 -7.5531 15 6 3.9402 -2.7894 -8.0790 16 1 2.9586 -3.2310 -7.9905 17 6 4.0893 -1.5542 -8.6732 18 7 5.2807 -1.0032 -8.7547 19 14 2.5992 -0.6633 -9.3626 20 1 1.3845 -1.4898 -9.1462 21 1 2.4390 0.6414 -8.6717 22 1 2.7892 -0.4331 -10.8173 23 6 5.3325 -4.9791 -7.9849 24 6 6.2430 -3.8899 -8.5554 25 8 2.0159 -0.6916 -1.1564 26 1 -0.3633 -1.0276 -0.0102 27 1 -0.3633 0.5050 0.8951 28 1 -0.3634 0.5226 -0.8848 29 1 2.3673 -0.0442 2.0165 30 1 1.3012 -1.4363 1.6291 31 1 3.4573 -2.4359 1.2412 32 1 4.1620 -0.8925 0.6497 33 1 4.5919 -2.8554 -1.3178 34 1 4.5445 -1.1309 -1.7564 35 1 2.8208 -1.6146 -3.4721 36 1 2.8682 -3.3390 -3.0335 37 1 6.1564 -2.2190 -6.1676 38 1 6.2014 -3.9416 -5.7215 39 1 5.3856 -0.1341 -9.1724 40 1 5.7658 -5.6679 -7.2596 41 1 4.5817 -5.4067 -8.6495 42 1 6.0912 -3.6008 -9.5954 43 1 7.2750 -3.8617 -8.2055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -128.267499 kcal Electronic energy + Delta-G solvation = -22254.979813 eV Core-core repulsion = 18879.457756 eV Total energy + Delta-G solvation = -3375.522057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.99135 -39.46681 -36.78083 -35.21996 -33.93600 -32.43990 -31.89461 -30.80472 -27.49030 -26.17766 -25.15041 -23.29066 -21.71084 -21.14881 -20.75138 -19.78366 -19.21265 -17.21739 -16.96876 -16.42417 -15.98064 -15.66275 -15.07805 -14.59379 -14.51795 -13.98183 -13.82869 -13.68058 -13.47568 -12.96495 -12.67031 -12.43398 -12.08508 -12.02903 -11.89845 -11.72421 -11.44503 -11.13512 -11.04224 -10.98562 -10.93729 -10.81957 -10.77675 -10.46199 -10.28519 -9.91201 -9.72189 -9.62082 -9.44714 -8.87381 -8.41544 -8.09912 -6.00334 -4.05003 2.90080 3.32216 3.40321 3.44366 3.47907 3.60365 4.27153 4.44673 4.53053 4.56795 4.89980 4.96185 5.04468 5.12290 5.23707 5.27060 5.30410 5.35498 5.40437 5.46293 5.50867 5.60469 5.66309 5.81571 5.82728 5.88851 5.99921 6.03134 6.16439 6.24290 6.26501 6.36975 6.52565 6.70590 6.80851 6.97709 7.05119 7.23714 7.41637 7.55560 7.92414 8.39472 8.59720 8.95703 9.60229 11.09416 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003834 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.495639 B = 7301.430715 C = 8380.311531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.078 0.922 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.081 3.919 7 H 0.073 0.927 8 C -0.104 4.104 9 C -0.112 4.112 10 C 0.452 3.548 11 O -0.533 6.533 12 O -0.325 6.325 13 C 0.117 3.883 14 C 0.035 3.965 15 C -0.480 4.480 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.210 4.210 24 C -0.145 4.145 25 O -0.371 6.371 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.259 0.741 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -0.760 18.534 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.096 0.904 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.090 0.910 8 C -0.142 4.142 9 C -0.149 4.149 10 C 0.296 3.704 11 O -0.424 6.424 12 O -0.240 6.240 13 C 0.043 3.957 14 C 0.035 3.965 15 C -0.517 4.517 16 H 0.081 0.919 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.247 4.247 24 C -0.183 4.183 25 O -0.291 6.291 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.726 -0.504 18.314 19.194 hybrid contribution -0.489 0.581 -0.206 0.787 sum -6.214 0.077 18.108 19.145 Atomic orbital electron populations 1.22146 0.95050 1.02555 1.02248 1.22698 0.94250 0.96418 0.84977 0.90431 1.23190 0.97919 0.99744 0.98083 1.23300 0.98603 1.01227 0.95826 1.23014 0.92270 0.89360 0.92995 0.90962 1.21557 0.96268 1.03544 0.92829 1.21279 0.95685 1.05000 0.92974 1.23653 0.90582 0.73125 0.83026 1.90584 1.25646 1.48717 1.77451 1.86589 1.39756 1.77651 1.19961 1.22700 0.83575 0.99799 0.89581 1.18791 0.97327 0.91625 0.88778 1.20344 0.91727 1.02262 1.37412 0.91888 1.24988 0.95767 0.97119 0.95572 1.70007 1.21662 1.16640 1.43827 0.86532 0.83235 0.79733 0.78527 1.19577 1.21005 1.21081 1.23115 1.03997 0.93151 1.04449 1.22518 0.93747 1.02038 0.99969 1.88503 1.70507 1.40297 1.29765 0.92217 0.91781 0.91785 0.90201 0.90475 0.89884 0.90046 0.89902 0.90262 0.87241 0.88268 0.91382 0.94338 0.93108 0.91628 0.90080 0.89373 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.44 37.16 0.35 -1.00 16 2 C 0.07 0.71 4.16 -26.01 -0.11 0.60 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.13 6.54 -24.79 -0.16 -1.29 16 5 C -0.15 -1.27 6.57 -24.48 -0.16 -1.43 16 6 C 0.08 0.86 3.43 -25.70 -0.09 0.78 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.10 -1.33 4.25 -26.73 -0.11 -1.45 16 9 C -0.11 -1.67 5.73 -27.88 -0.16 -1.83 16 10 C 0.45 9.06 7.96 36.01 0.29 9.35 16 11 O -0.53 -11.65 15.73 -18.75 -0.29 -11.94 16 12 O -0.33 -7.55 9.61 -39.24 -0.38 -7.93 16 13 C 0.12 2.84 5.53 37.16 0.21 3.05 16 14 C 0.04 0.89 1.81 -155.66 -0.28 0.61 16 15 C -0.48 -13.28 8.24 -34.44 -0.28 -13.56 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.07 1.89 5.41 -17.82 -0.10 1.80 16 18 N -0.88 -25.43 12.80 55.43 0.71 -24.72 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.21 -4.63 9.88 -26.73 -0.26 -4.89 16 24 C -0.15 -3.43 9.33 -26.73 -0.25 -3.68 16 25 O -0.37 -4.66 10.35 -35.23 -0.36 -5.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 35 H 0.11 1.69 7.91 -51.93 -0.41 1.28 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.79 8.13 -51.93 -0.42 1.37 16 38 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 42 H 0.09 2.20 8.14 -51.92 -0.42 1.77 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -31.24 357.48 -8.61 -39.85 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.53 Total: 0.85 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.13 Total: -12.96 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.71 Total: -24.72 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.04 Total: -24.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.24 -8.61 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.415 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds