Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.33553 * 2 1 4 4 C 1.54475 * 110.37291 * 122.37614 * 2 1 3 5 5 C 1.54511 * 104.06393 * 142.80958 * 4 2 1 6 6 C 1.54478 * 104.06274 * 359.97438 * 5 4 2 7 7 H 1.09005 * 110.36932 * 94.85614 * 6 5 4 8 8 C 1.53001 * 110.36987 * 217.18867 * 6 5 4 9 9 C 1.52999 * 109.46836 * 181.83699 * 8 6 5 10 10 C 1.50700 * 109.47333 * 180.02562 * 9 8 6 11 11 O 1.20826 * 119.99565 * 359.97438 * 10 9 8 12 12 O 1.34221 * 120.00373 * 179.97438 * 10 9 8 13 13 C 1.45202 * 117.00369 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47564 * 180.02562 * 13 12 10 15 15 C 1.50708 * 115.54874 * 39.89802 * 14 13 12 16 16 H 1.08001 * 119.99817 * 264.97565 * 15 14 13 17 17 C 1.37875 * 119.99919 * 84.97334 * 15 14 13 18 18 N 1.31514 * 119.99816 * 358.42450 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 178.42893 * 17 15 14 20 20 H 1.48509 * 109.47277 * 90.00056 * 19 17 15 21 21 H 1.48507 * 109.46930 * 209.99412 * 19 17 15 22 22 H 1.48499 * 109.47599 * 329.99823 * 19 17 15 23 23 C 1.52999 * 117.50154 * 254.19527 * 14 13 12 24 24 C 1.52995 * 117.50236 * 185.56841 * 14 13 12 25 25 O 1.44426 * 104.80283 * 336.02288 * 6 5 4 26 26 H 1.08994 * 109.47185 * 180.78903 * 1 2 3 27 27 H 1.09010 * 109.46963 * 60.78919 * 1 2 3 28 28 H 1.08998 * 109.47100 * 300.79148 * 1 2 3 29 29 H 1.09008 * 110.51183 * 261.45468 * 4 2 1 30 30 H 1.08994 * 110.51616 * 24.16211 * 4 2 1 31 31 H 1.08997 * 110.50740 * 241.35181 * 5 4 2 32 32 H 1.09005 * 110.62775 * 118.70532 * 5 4 2 33 33 H 1.08997 * 109.47083 * 301.83642 * 8 6 5 34 34 H 1.08997 * 109.46705 * 61.83798 * 8 6 5 35 35 H 1.09005 * 109.46971 * 300.00044 * 9 8 6 36 36 H 1.09004 * 109.47348 * 59.99855 * 9 8 6 37 37 H 1.09000 * 109.47238 * 300.00767 * 13 12 10 38 38 H 1.09004 * 109.46629 * 60.00068 * 13 12 10 39 39 H 0.97006 * 119.99941 * 180.02562 * 18 17 15 40 40 H 1.08995 * 117.49883 * 359.97438 * 23 14 13 41 41 H 1.08997 * 117.50525 * 145.02356 * 23 14 13 42 42 H 1.08998 * 117.50044 * 214.97949 * 24 14 13 43 43 H 1.09000 * 117.49985 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7754 1.2230 5 6 3.3178 -1.5065 0.6841 6 6 3.3870 -1.0867 -0.8009 7 1 4.0520 -0.2318 -0.9230 8 6 3.8598 -2.2583 -1.6640 9 6 3.9647 -1.8076 -3.1223 10 6 4.4298 -2.9616 -3.9726 11 8 4.6547 -4.0343 -3.4642 12 8 4.5941 -2.7978 -5.2946 13 6 5.0450 -3.9523 -6.0510 14 6 5.1739 -3.5757 -7.5282 15 6 5.7451 -2.2083 -7.8029 16 1 5.0842 -1.3696 -7.9645 17 6 7.1113 -2.0283 -7.8479 18 7 7.9162 -3.0432 -7.6204 19 14 7.8190 -0.3427 -8.2317 20 1 8.0108 0.4132 -6.9679 21 1 9.1267 -0.4995 -8.9179 22 1 6.8825 0.3982 -9.1144 23 6 4.1032 -4.1001 -8.4871 24 6 5.5129 -4.6942 -8.5155 25 8 2.0323 -0.7232 -1.1452 26 1 -0.3633 -1.0275 0.0142 27 1 -0.3633 0.5016 -0.8971 28 1 -0.3633 0.5261 0.8828 29 1 2.3429 -0.0862 2.0214 30 1 1.3276 -1.4937 1.5755 31 1 3.1955 -2.5861 0.7702 32 1 4.2120 -1.1808 1.2156 33 1 4.8366 -2.5946 -1.3165 34 1 3.1450 -3.0776 -1.5874 35 1 2.9878 -1.4712 -3.4698 36 1 4.6794 -0.9881 -3.1989 37 1 6.0142 -4.2781 -5.6735 38 1 4.3226 -4.7615 -5.9437 39 1 8.8774 -2.9165 -7.6517 40 1 3.3072 -4.7138 -8.0656 41 1 3.8117 -3.4562 -9.3169 42 1 6.1487 -4.4411 -9.3639 43 1 5.6445 -5.6984 -8.1126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -128.104462 kcal Electronic energy + Delta-G solvation = -22199.203278 eV Core-core repulsion = 18823.688291 eV Total energy + Delta-G solvation = -3375.514987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96849 -39.45268 -36.78477 -35.22546 -33.94516 -32.40889 -31.90947 -30.87019 -27.50209 -26.16673 -25.15308 -23.25320 -21.56365 -21.13411 -20.96164 -19.87639 -19.22090 -16.96506 -16.78298 -16.33960 -16.21871 -15.59229 -15.23692 -14.94220 -14.54127 -14.00884 -13.81735 -13.68048 -13.34185 -12.87918 -12.70335 -12.44574 -12.14802 -12.03299 -11.82362 -11.68016 -11.42590 -11.19766 -11.00603 -10.93900 -10.88793 -10.83956 -10.77579 -10.48958 -10.28670 -9.92205 -9.87015 -9.72730 -9.46086 -8.88179 -8.42514 -8.10490 -6.01628 -4.06268 2.89482 3.31251 3.37748 3.41268 3.47047 3.63765 4.38805 4.42546 4.45123 4.69225 4.76566 4.96679 5.04883 5.11296 5.22240 5.26971 5.28297 5.31210 5.35396 5.52527 5.55381 5.62476 5.67239 5.80729 5.83245 5.87798 5.90269 6.02999 6.10230 6.23854 6.24896 6.36867 6.52541 6.70886 6.76936 6.80543 7.04878 7.23179 7.41489 7.55091 7.90805 8.38708 8.58999 8.94150 9.58641 11.08067 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.003498 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.596275 B = 8002.067819 C = 8473.999462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.075 3.925 7 H 0.072 0.928 8 C -0.099 4.099 9 C -0.113 4.113 10 C 0.453 3.547 11 O -0.532 6.532 12 O -0.325 6.325 13 C 0.117 3.883 14 C 0.035 3.965 15 C -0.480 4.480 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.210 4.210 24 C -0.145 4.145 25 O -0.365 6.365 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.260 0.740 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 4.944 15.993 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.018 3.982 7 H 0.090 0.910 8 C -0.137 4.137 9 C -0.150 4.150 10 C 0.296 3.704 11 O -0.424 6.424 12 O -0.240 6.240 13 C 0.044 3.956 14 C 0.035 3.965 15 C -0.518 4.518 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.247 4.247 24 C -0.183 4.183 25 O -0.285 6.285 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.128 4.516 15.888 19.376 hybrid contribution 0.740 0.725 0.029 1.036 sum -9.388 5.241 15.918 19.209 Atomic orbital electron populations 1.21803 0.93336 1.02902 1.02364 1.22961 0.95292 0.95434 0.85278 0.91470 1.22999 0.97841 0.99741 0.98293 1.22980 0.98358 1.01822 0.95757 1.23034 0.84752 0.97075 0.93383 0.91004 1.21471 1.02813 0.96886 0.92519 1.21289 1.04413 0.96014 0.93308 1.23629 0.74316 0.89466 0.82952 1.90585 1.48626 1.28687 1.74461 1.86586 1.76213 1.42499 1.18657 1.22698 0.97577 0.83209 0.92159 1.18783 0.96987 0.95531 0.85221 1.20313 0.90953 0.92032 1.48476 0.91939 1.24988 0.97069 0.96644 0.94772 1.70002 1.03225 1.30141 1.48782 0.86584 0.78393 0.84472 0.78497 1.20641 1.21303 1.19782 1.23115 0.91982 1.04882 1.04723 1.22516 0.96207 0.96319 1.03219 1.89190 1.26989 1.74388 1.37943 0.91801 0.91741 0.91383 0.90761 0.90622 0.90327 0.90483 0.89681 0.90240 0.87480 0.88009 0.91384 0.94316 0.93065 0.91597 0.90072 0.89376 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.52 37.16 0.35 -0.79 16 2 C 0.07 0.62 3.92 -25.96 -0.10 0.52 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -1.16 6.63 -25.16 -0.17 -1.33 16 5 C -0.15 -1.32 6.63 -25.16 -0.17 -1.49 16 6 C 0.08 0.81 3.27 -25.96 -0.08 0.72 16 7 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 8 C -0.10 -1.28 4.14 -26.73 -0.11 -1.39 16 9 C -0.11 -1.68 5.73 -27.88 -0.16 -1.84 16 10 C 0.45 9.06 7.96 36.01 0.29 9.35 16 11 O -0.53 -11.64 15.73 -18.75 -0.29 -11.93 16 12 O -0.33 -7.55 9.61 -39.23 -0.38 -7.92 16 13 C 0.12 2.84 5.53 37.15 0.21 3.05 16 14 C 0.04 0.89 1.81 -155.66 -0.28 0.61 16 15 C -0.48 -13.23 8.24 -34.44 -0.28 -13.51 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.07 1.87 5.41 -17.82 -0.10 1.77 16 18 N -0.88 -25.22 12.80 55.43 0.71 -24.51 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.21 -4.65 9.88 -26.73 -0.26 -4.91 16 24 C -0.15 -3.43 9.33 -26.73 -0.25 -3.68 16 25 O -0.37 -4.43 10.69 -35.23 -0.38 -4.80 16 26 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 31 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.11 1.53 7.91 -51.93 -0.41 1.12 16 36 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.78 8.13 -51.93 -0.42 1.36 16 38 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -30.92 357.37 -8.61 -39.53 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.52 Total: 0.94 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.12 Total: -12.92 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.71 Total: -24.51 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.05 Total: -24.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.92 -8.61 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.571 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds