Wall clock time and date at job start Tue Mar 31 2020 05:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.33189 * 2 1 4 4 C 1.54476 * 110.46357 * 237.68939 * 2 1 3 5 5 C 1.54518 * 104.06053 * 217.14154 * 4 2 1 6 6 C 1.54477 * 104.06007 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.46189 * 265.09444 * 6 5 4 8 8 C 1.53004 * 110.37060 * 142.81272 * 6 5 4 9 9 C 1.53002 * 109.47161 * 178.16322 * 8 6 5 10 10 C 1.50700 * 109.46847 * 179.97438 * 9 8 6 11 11 O 1.20826 * 120.00371 * 5.51658 * 10 9 8 12 12 O 1.34225 * 119.99574 * 185.51764 * 10 9 8 13 13 C 1.45201 * 116.99878 * 183.43771 * 12 10 9 14 14 C 1.53000 * 109.47248 * 184.28966 * 13 12 10 15 15 C 1.50705 * 115.55230 * 32.61456 * 14 13 12 16 16 H 1.07994 * 120.00414 * 270.72766 * 15 14 13 17 17 C 1.37880 * 119.99672 * 90.72115 * 15 14 13 18 18 N 1.31516 * 119.99582 * 172.79284 * 17 15 14 19 19 Si 1.86803 * 120.00143 * 352.79095 * 17 15 14 20 20 H 1.48493 * 109.46876 * 93.14781 * 19 17 15 21 21 H 1.48503 * 109.46937 * 213.14767 * 19 17 15 22 22 H 1.48502 * 109.47041 * 333.14468 * 19 17 15 23 23 C 1.53000 * 117.50177 * 246.91141 * 14 13 12 24 24 C 1.52998 * 117.50146 * 178.28478 * 14 13 12 25 25 O 1.44418 * 104.80654 * 23.98009 * 6 5 4 26 26 H 1.09001 * 109.46893 * 299.20100 * 1 2 3 27 27 H 1.09006 * 109.46873 * 59.19896 * 1 2 3 28 28 H 1.08996 * 109.47396 * 179.20199 * 1 2 3 29 29 H 1.08996 * 110.51239 * 335.78376 * 4 2 1 30 30 H 1.09002 * 110.51346 * 98.36319 * 4 2 1 31 31 H 1.09000 * 110.51335 * 241.35465 * 5 4 2 32 32 H 1.08998 * 110.50866 * 118.64459 * 5 4 2 33 33 H 1.08999 * 109.47444 * 58.15930 * 8 6 5 34 34 H 1.09003 * 109.46485 * 298.15832 * 8 6 5 35 35 H 1.08998 * 109.46951 * 59.99937 * 9 8 6 36 36 H 1.08999 * 109.46811 * 299.99908 * 9 8 6 37 37 H 1.09001 * 109.47406 * 64.29319 * 13 12 10 38 38 H 1.08999 * 109.47195 * 304.28723 * 13 12 10 39 39 H 0.97005 * 119.99883 * 180.02562 * 18 17 15 40 40 H 1.09006 * 117.49568 * 359.97438 * 23 14 13 41 41 H 1.08994 * 117.50387 * 145.01672 * 23 14 13 42 42 H 1.09005 * 117.50225 * 214.97566 * 24 14 13 43 43 H 1.08996 * 117.49705 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0701 -0.7736 -1.2232 5 6 3.3208 -1.5032 -0.6837 6 6 3.3878 -1.0845 0.8018 7 1 4.0518 -0.2292 0.9270 8 6 3.8616 -2.2560 1.6644 9 6 3.9644 -1.8063 3.1233 10 6 4.4305 -2.9604 3.9729 11 8 4.7526 -4.0023 3.4527 12 8 4.4878 -2.8308 5.3077 13 6 5.0183 -3.9557 6.0570 14 6 4.9065 -3.6685 7.5557 15 6 3.7203 -2.8370 7.9714 16 1 3.7983 -1.7602 7.9978 17 6 2.5355 -3.4511 8.3180 18 7 1.5473 -2.7399 8.8154 19 14 2.3339 -5.2930 8.0812 20 1 2.7003 -5.9964 9.3366 21 1 0.9213 -5.5962 7.7380 22 1 3.2198 -5.7505 6.9807 23 6 6.2079 -3.4846 8.3389 24 6 5.3788 -4.7576 8.5209 25 8 2.0323 -0.7234 1.1450 26 1 -0.3633 0.5014 0.8971 27 1 -0.3633 0.5263 -0.8828 28 1 -0.3634 -1.0275 -0.0143 29 1 1.3313 -1.4927 -1.5769 30 1 2.3428 -0.0835 -2.0216 31 1 4.2139 -1.1736 -1.2145 32 1 3.2002 -2.5830 -0.7707 33 1 4.8393 -2.5906 1.3176 34 1 3.1481 -3.0764 1.5865 35 1 2.9867 -1.4718 3.4701 36 1 4.6778 -0.9859 3.2011 37 1 6.0651 -4.1067 5.7933 38 1 4.4496 -4.8537 5.8158 39 1 0.7138 -3.1720 9.0596 40 1 7.1438 -3.5687 7.7865 41 1 6.2064 -2.7620 9.1549 42 1 4.8319 -4.8724 9.4568 43 1 5.7696 -5.6785 8.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:59 Heat of formation + Delta-G solvation = -121.356202 kcal Electronic energy + Delta-G solvation = -22343.773028 eV Core-core repulsion = 18968.550667 eV Total energy + Delta-G solvation = -3375.222361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02619 -39.53325 -37.12765 -35.43012 -33.97222 -32.38790 -32.03903 -30.86978 -27.69608 -26.35214 -25.18863 -23.28249 -21.69603 -21.54130 -20.95653 -20.00206 -19.10974 -17.12526 -16.77923 -16.39865 -16.32651 -15.73301 -15.40687 -14.98516 -14.69760 -13.99445 -13.82588 -13.78288 -13.33965 -12.83280 -12.68319 -12.49722 -12.45282 -12.30204 -12.09823 -11.80908 -11.55024 -11.19385 -11.13675 -11.01414 -10.88973 -10.81450 -10.78340 -10.52543 -10.19453 -9.97607 -9.84620 -9.83800 -9.58105 -9.05897 -8.56587 -8.43039 -6.06706 -4.06860 2.77252 3.29944 3.32635 3.40868 3.43865 3.66085 4.39585 4.45119 4.45471 4.70227 4.75113 4.82916 4.97505 5.03342 5.13074 5.19984 5.23852 5.29392 5.38147 5.47480 5.53406 5.58189 5.67593 5.73552 5.77927 5.83889 5.87412 5.92937 5.96407 6.05314 6.10991 6.14832 6.21940 6.36058 6.43906 6.66427 6.79852 6.86822 7.08294 7.27616 7.74266 8.39200 8.56802 8.98954 9.56678 11.05470 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.003823 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.473424 B = 7321.874991 C = 8005.169441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.075 3.925 7 H 0.072 0.928 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.454 3.546 11 O -0.533 6.533 12 O -0.317 6.317 13 C 0.102 3.898 14 C -0.006 4.006 15 C -0.472 4.472 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.896 5.896 19 Si 0.873 3.127 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.261 1.261 23 C -0.177 4.177 24 C -0.194 4.194 25 O -0.363 6.363 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 4.143 -18.657 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.189 4.189 6 C 0.018 3.982 7 H 0.089 0.911 8 C -0.137 4.137 9 C -0.151 4.151 10 C 0.298 3.702 11 O -0.424 6.424 12 O -0.231 6.231 13 C 0.028 3.972 14 C -0.007 4.007 15 C -0.510 4.510 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.533 5.533 19 Si 0.701 3.299 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.186 1.186 23 C -0.215 4.215 24 C -0.231 4.231 25 O -0.283 6.283 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.919 3.770 -18.478 19.084 hybrid contribution -0.070 -1.147 -0.260 1.178 sum 2.849 2.623 -18.738 19.134 Atomic orbital electron populations 1.21805 0.93258 1.02986 1.02431 1.22962 0.95388 0.95382 0.85193 0.91483 1.23005 0.97821 0.99774 0.98310 1.22976 0.98345 1.01812 0.95729 1.23014 0.84940 0.96954 0.93342 0.91061 1.21483 1.02731 0.97073 0.92461 1.21306 1.04972 0.95557 0.93220 1.23730 0.74464 0.89157 0.82878 1.90585 1.46974 1.30318 1.74562 1.86659 1.74417 1.44283 1.17731 1.22874 0.95811 0.86562 0.91911 1.19342 0.95877 0.98706 0.86729 1.20105 0.92772 0.94084 1.44006 0.90067 1.24931 0.95678 0.97758 0.93965 1.69895 1.04998 1.36141 1.42307 0.86977 0.77117 0.86576 0.79216 1.20353 1.21893 1.18612 1.22948 0.94452 0.99852 1.04206 1.22991 1.05281 0.92320 1.02498 1.89226 1.26724 1.74399 1.37937 0.91601 0.91395 0.91770 0.90623 0.90767 0.90541 0.90343 0.89714 0.90250 0.87001 0.88008 0.93353 0.91801 0.92618 0.90866 0.89095 0.88828 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.53 37.16 0.35 -0.93 16 2 C 0.07 0.66 3.92 -25.96 -0.10 0.56 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.15 -1.20 6.63 -25.16 -0.17 -1.37 16 5 C -0.15 -1.30 6.63 -25.16 -0.17 -1.47 16 6 C 0.08 0.80 3.27 -25.95 -0.08 0.72 16 7 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 8 C -0.10 -1.26 4.16 -26.73 -0.11 -1.37 16 9 C -0.11 -1.66 5.73 -27.88 -0.16 -1.82 16 10 C 0.45 8.78 7.95 36.01 0.29 9.07 16 11 O -0.53 -11.14 15.66 -18.75 -0.29 -11.43 16 12 O -0.32 -7.12 9.45 -39.25 -0.37 -7.49 16 13 C 0.10 2.30 5.46 37.16 0.20 2.50 16 14 C -0.01 -0.13 1.30 -155.66 -0.20 -0.33 16 15 C -0.47 -13.30 8.66 -34.44 -0.30 -13.60 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 18 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 19 Si 0.87 22.10 25.20 -169.99 -4.28 17.81 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.26 -6.39 5.32 56.52 0.30 -6.09 16 23 C -0.18 -3.62 9.88 -26.73 -0.26 -3.88 16 24 C -0.19 -4.13 7.67 -26.73 -0.20 -4.34 16 25 O -0.36 -4.65 10.69 -35.23 -0.38 -5.03 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 1.74 7.91 -51.93 -0.41 1.33 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 38 H 0.06 1.50 6.26 -51.93 -0.32 1.18 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 41 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 42 H 0.09 2.08 7.23 -51.93 -0.38 1.71 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -32.41 347.75 -7.81 -40.22 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.48 Total: 1.40 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.02 Total: -14.09 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.04 Total: -23.94 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.28 Total: 17.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.41 -7.81 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.138 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds