Wall clock time and date at job start Tue Mar 31 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99393 * 2 1 4 4 H 1.48505 * 109.46667 * 270.00007 * 3 2 1 5 5 H 1.48491 * 109.47317 * 29.99992 * 3 2 1 6 6 H 1.48497 * 109.46798 * 150.00420 * 3 2 1 7 7 C 1.37871 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00180 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00106 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47469 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00353 * 189.99746 * 10 9 7 12 12 C 1.53001 * 109.47350 * 75.75099 * 11 10 9 13 13 C 1.53000 * 109.47261 * 174.86346 * 12 11 10 14 14 N 1.46500 * 109.46605 * 180.02562 * 13 12 11 15 15 C 1.47094 * 125.56142 * 90.00261 * 14 13 12 16 16 C 1.54094 * 103.77731 * 180.02562 * 15 14 13 17 17 O 1.45699 * 104.12849 * 359.93026 * 16 15 14 18 18 C 1.34008 * 125.55687 * 270.01985 * 14 13 12 19 19 O 1.21507 * 123.07122 * 0.02782 * 18 14 13 20 20 C 1.46904 * 110.99931 * 66.04664 * 10 9 7 21 21 C 1.52997 * 109.47303 * 199.50605 * 20 10 9 22 22 C 1.52996 * 117.49882 * 243.46180 * 21 20 10 23 23 C 1.52997 * 60.00471 * 252.50984 * 22 21 20 24 24 H 0.97001 * 120.00593 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47502 * 59.99262 * 9 7 2 26 26 H 1.09001 * 109.47233 * 299.99579 * 9 7 2 27 27 H 1.09000 * 109.47456 * 315.74947 * 11 10 9 28 28 H 1.09004 * 109.47420 * 195.75225 * 11 10 9 29 29 H 1.08996 * 109.46768 * 54.86124 * 12 11 10 30 30 H 1.09003 * 109.46820 * 294.86797 * 12 11 10 31 31 H 1.08996 * 109.47411 * 60.00172 * 13 12 11 32 32 H 1.09000 * 109.46843 * 299.99939 * 13 12 11 33 33 H 1.08995 * 110.56542 * 61.44627 * 15 14 13 34 34 H 1.08995 * 110.56113 * 298.58869 * 15 14 13 35 35 H 1.08995 * 110.51832 * 118.62651 * 16 15 14 36 36 H 1.08998 * 110.52213 * 241.23368 * 16 15 14 37 37 H 1.09009 * 109.46820 * 319.49962 * 20 10 9 38 38 H 1.08994 * 109.47594 * 79.50206 * 20 10 9 39 39 H 1.08997 * 115.54878 * 29.16867 * 21 20 10 40 40 H 1.09007 * 117.50126 * 359.97438 * 22 21 20 41 41 H 1.09004 * 117.50316 * 145.01515 * 22 21 20 42 42 H 1.08997 * 117.49841 * 252.51785 * 23 22 21 43 43 H 1.08994 * 117.50238 * 107.48054 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5788 -0.0010 11 6 5.4502 -2.6248 0.2365 12 6 5.7327 -2.3671 1.7180 13 6 7.2282 -2.5412 1.9899 14 7 7.4984 -2.2950 3.4086 15 6 7.4785 -3.3110 4.4721 16 6 7.8266 -2.5162 5.7455 17 8 8.0067 -1.1496 5.2736 18 6 7.8037 -1.1074 3.9491 19 8 7.8893 -0.0850 3.2981 20 6 3.6514 -3.2610 -1.2541 21 6 3.7250 -4.7753 -1.0481 22 6 4.7631 -5.5494 -1.8627 23 6 3.2771 -5.6685 -2.2068 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6801 0.8887 26 1 3.8745 -0.6799 -0.8912 27 1 5.9416 -1.8603 -0.3653 28 1 5.8329 -3.6070 -0.0408 29 1 5.1682 -3.0757 2.3240 30 1 5.4327 -1.3508 1.9736 31 1 7.7926 -1.8326 1.3839 32 1 7.5280 -3.5575 1.7343 33 1 8.2288 -4.0785 4.2825 34 1 6.4872 -3.7561 4.5577 35 1 7.0084 -2.5678 6.4637 36 1 8.7484 -2.8915 6.1900 37 1 2.6393 -2.9832 -1.5487 38 1 4.3512 -2.9663 -2.0360 39 1 3.5181 -5.1226 -0.0358 40 1 5.3935 -4.9800 -2.5458 41 1 5.2398 -6.4063 -1.3865 42 1 2.7760 -6.6036 -1.9568 43 1 2.9300 -5.1772 -3.1158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746463105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:27 Heat of formation + Delta-G solvation = -38.850579 kcal Electronic energy + Delta-G solvation = -22518.194843 eV Core-core repulsion = 19178.842946 eV Total energy + Delta-G solvation = -3339.351897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56060 -38.08830 -37.22107 -36.36324 -35.40337 -32.71797 -31.78137 -29.65530 -28.04560 -26.61685 -24.22393 -23.73198 -22.31107 -21.90604 -20.85465 -20.29963 -19.65163 -17.49149 -17.29568 -16.90639 -16.81142 -15.53838 -15.30741 -14.86939 -14.39375 -14.25385 -14.20293 -13.99894 -13.85238 -13.64019 -13.30579 -12.64578 -12.54120 -12.26296 -12.06796 -11.78540 -11.69037 -11.33498 -11.16231 -10.94901 -10.83814 -10.68676 -10.64376 -10.51048 -10.28088 -9.81448 -9.75210 -9.52506 -9.21119 -8.98701 -8.54835 -7.41691 -6.03441 -4.00608 2.34135 2.70732 3.32021 3.34695 3.40360 3.45960 3.93366 4.09614 4.39148 4.45502 4.50460 4.59687 4.95020 5.01180 5.07041 5.20614 5.23305 5.29108 5.30784 5.34726 5.42947 5.56267 5.65077 5.74954 5.81862 5.87963 5.99478 6.08369 6.23734 6.28139 6.31134 6.37303 6.48128 6.61501 6.76970 6.91208 6.99571 7.25544 7.64219 7.92403 7.98398 8.07273 8.67099 9.05035 9.59054 11.09410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.005358 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.417020 B = 5224.193010 C = 7212.673696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.160 3.840 10 N -0.524 5.524 11 C 0.058 3.942 12 C -0.132 4.132 13 C 0.148 3.852 14 N -0.627 5.627 15 C 0.065 3.935 16 C 0.040 3.960 17 O -0.332 6.332 18 C 0.640 3.360 19 O -0.518 6.518 20 C 0.089 3.911 21 C -0.130 4.130 22 C -0.193 4.193 23 C -0.182 4.182 24 H 0.263 0.737 25 H 0.031 0.969 26 H -0.017 1.017 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.021 0.979 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.095 -12.662 6.145 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.247 5.247 11 C -0.071 4.071 12 C -0.172 4.172 13 C 0.028 3.972 14 N -0.375 5.375 15 C -0.059 4.059 16 C -0.035 4.035 17 O -0.242 6.242 18 C 0.393 3.607 19 O -0.402 6.402 20 C -0.039 4.039 21 C -0.149 4.149 22 C -0.230 4.230 23 C -0.220 4.220 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.000 1.000 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.040 0.960 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.812 -12.045 6.337 20.863 hybrid contribution 0.667 1.131 -0.598 1.443 sum 16.479 -10.914 5.739 20.582 Atomic orbital electron populations 1.69888 1.06100 1.26820 1.51113 1.24874 0.94696 0.98776 0.94803 0.86935 0.80617 0.84170 0.78541 1.20339 1.21121 1.18985 1.21032 0.88725 0.94673 1.50308 0.90042 1.20231 0.97041 0.84145 0.95181 1.61845 1.10143 1.18827 1.33908 1.21944 0.90638 0.99943 0.94599 1.21970 0.93863 1.03642 0.97676 1.21387 0.97423 1.02085 0.76349 1.48089 1.72453 1.07712 1.09269 1.22802 1.04268 0.92584 0.86212 1.24260 1.04201 0.78309 0.96700 1.87366 1.84404 1.30383 1.22070 1.18593 0.76724 0.84629 0.80722 1.91066 1.56368 1.32234 1.60549 1.21624 1.02174 0.90034 0.90027 1.22414 1.01931 0.94092 0.96448 1.23028 0.92204 1.03183 1.04570 1.22894 0.96889 1.01734 1.00480 0.92693 0.95102 0.99962 0.95567 0.91497 0.90771 0.91146 0.89661 0.89834 0.89137 0.88759 0.87655 0.87838 0.88623 0.96037 0.87335 0.89450 0.89568 0.89242 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.51 -14.42 8.79 -34.45 -0.30 -14.73 16 8 H 0.08 2.49 7.55 -52.48 -0.40 2.10 16 9 C 0.16 3.90 3.62 -4.98 -0.02 3.88 16 10 N -0.52 -10.51 4.36 -236.07 -1.03 -11.54 16 11 C 0.06 0.93 4.81 -3.82 -0.02 0.92 16 12 C -0.13 -1.99 5.57 -26.73 -0.15 -2.14 16 13 C 0.15 1.74 6.01 -4.04 -0.02 1.72 16 14 N -0.63 -7.40 2.96 -178.76 -0.53 -7.93 16 15 C 0.06 0.45 7.70 -3.15 -0.02 0.42 16 16 C 0.04 0.27 8.22 37.73 0.31 0.58 16 17 O -0.33 -4.28 11.11 -38.58 -0.43 -4.71 16 18 C 0.64 9.84 8.85 53.71 0.48 10.32 16 19 O -0.52 -10.36 17.55 -19.10 -0.34 -10.70 16 20 C 0.09 1.66 5.07 -3.82 -0.02 1.64 16 21 C -0.13 -1.97 5.15 -90.62 -0.47 -2.44 16 22 C -0.19 -2.36 10.09 -26.73 -0.27 -2.63 16 23 C -0.18 -2.40 10.25 -26.73 -0.27 -2.67 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.03 0.78 5.77 -51.93 -0.30 0.48 16 26 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 27 H 0.03 0.44 8.00 -51.93 -0.42 0.02 16 28 H 0.07 0.91 7.22 -51.93 -0.37 0.54 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.32 6.96 -51.93 -0.36 0.95 16 31 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 2.06 6.58 -51.92 -0.34 1.72 16 38 H 0.02 0.38 7.73 -51.93 -0.40 -0.02 16 39 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.09 1.05 8.03 -51.92 -0.42 0.63 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -34.98 350.81 -9.02 -43.99 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.21 Total: -1.79 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.88 Total: -3.18 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.78 Total: -46.43 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.76 Total: -15.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.98 -9.02 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.140 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds