Wall clock time and date at job start Tue Mar 31 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00234 * 2 1 4 4 C 1.50700 * 120.00043 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.47168 * 355.00579 * 4 2 1 6 6 C 1.53003 * 109.47126 * 114.99771 * 4 2 1 7 7 C 1.50700 * 109.47328 * 184.99972 * 6 4 2 8 8 O 1.20835 * 119.99600 * 0.02562 * 7 6 4 9 9 O 1.34228 * 120.00368 * 180.02562 * 7 6 4 10 10 C 1.45198 * 117.00205 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.50701 * 115.55544 * 294.88682 * 11 10 9 13 13 H 1.07995 * 119.99892 * 95.15843 * 12 11 10 14 14 C 1.37875 * 119.99625 * 274.89404 * 12 11 10 15 15 N 1.31516 * 120.00645 * 6.38641 * 14 12 11 16 16 Si 1.86804 * 119.99966 * 186.39037 * 14 12 11 17 17 H 1.48497 * 109.46911 * 59.99497 * 16 14 12 18 18 H 1.48501 * 109.47278 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46934 * 299.99733 * 16 14 12 20 20 C 1.52999 * 117.50107 * 80.55676 * 11 10 9 21 21 C 1.53002 * 117.49851 * 149.21518 * 11 10 9 22 22 O 1.42899 * 109.47505 * 235.00330 * 4 2 1 23 23 C 1.42897 * 114.00041 * 89.99571 * 22 4 2 24 24 C 1.52999 * 109.46944 * 180.02562 * 23 22 4 25 25 H 1.08003 * 120.00171 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00252 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46910 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46855 * 300.00176 * 3 2 1 29 29 H 1.08996 * 109.46702 * 59.99640 * 3 2 1 30 30 H 1.09004 * 109.46971 * 65.00574 * 6 4 2 31 31 H 1.08998 * 109.47214 * 305.00589 * 6 4 2 32 32 H 1.09001 * 109.46840 * 59.99792 * 10 9 7 33 33 H 1.09000 * 109.47129 * 299.99899 * 10 9 7 34 34 H 0.96998 * 120.00543 * 180.02562 * 15 14 12 35 35 H 1.08998 * 117.50651 * 215.00344 * 20 11 10 36 36 H 1.09007 * 117.49575 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.50100 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49932 * 144.97481 * 21 11 10 39 39 H 1.08997 * 109.47245 * 300.00599 * 23 22 4 40 40 H 1.08999 * 109.47046 * 60.00227 * 23 22 4 41 41 H 1.08997 * 109.47519 * 300.00285 * 24 23 22 42 42 H 1.08999 * 109.47182 * 60.00165 * 24 23 22 43 43 H 1.09002 * 109.46968 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 1.3585 -2.1317 0.0904 6 6 2.8464 -1.4426 -1.3068 7 6 3.5008 -2.7990 -1.3602 8 8 3.3555 -3.5762 -0.4464 9 8 4.2451 -3.1438 -2.4226 10 6 4.8447 -4.4661 -2.4063 11 6 5.6490 -4.6772 -3.6906 12 6 4.8444 -4.7033 -4.9646 13 1 4.7320 -3.8033 -5.5508 14 6 4.2564 -5.8776 -5.3845 15 7 4.2905 -6.9426 -4.6136 16 14 3.4114 -5.9560 -7.0487 17 1 4.3938 -5.6442 -8.1177 18 1 2.8642 -7.3199 -7.2622 19 1 2.3050 -4.9663 -7.0891 20 6 7.0519 -4.0699 -3.7535 21 6 6.8787 -5.5842 -3.6129 22 8 2.9708 -1.3308 1.1042 23 6 2.4137 -1.8756 2.3021 24 6 3.4678 -1.8530 3.4109 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 3.1352 1.1058 -0.0005 28 1 1.8001 1.8767 -0.8900 29 1 1.8001 1.8766 0.8899 30 1 3.6117 -0.6678 -1.3551 31 1 2.1656 -1.3340 -2.1511 32 1 4.0602 -5.2199 -2.3413 33 1 5.5060 -4.5545 -1.5444 34 1 3.8771 -7.7688 -4.9092 35 1 7.3929 -3.6892 -4.7162 36 1 7.4020 -3.5202 -2.8797 37 1 7.1150 -6.0303 -2.6468 38 1 7.1055 -6.2002 -4.4832 39 1 1.5536 -1.2794 2.6066 40 1 2.0979 -2.9031 2.1214 41 1 4.3281 -2.4490 3.1066 42 1 3.7832 -0.8254 3.5915 43 1 3.0430 -2.2690 4.3245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756567847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:14 Heat of formation + Delta-G solvation = -102.121567 kcal Electronic energy + Delta-G solvation = -22602.893762 eV Core-core repulsion = 19228.505478 eV Total energy + Delta-G solvation = -3374.388284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91489 -38.49018 -36.68046 -35.26372 -35.10730 -31.95415 -31.76429 -30.19718 -27.52419 -26.86654 -25.31968 -23.97923 -22.73620 -21.17661 -20.08876 -19.22834 -18.94550 -17.00849 -16.81061 -16.45057 -15.73113 -15.58786 -15.29193 -14.59411 -14.41754 -14.17948 -13.84600 -13.71279 -13.31253 -13.09076 -12.77507 -12.34313 -12.18774 -11.98150 -11.81468 -11.71095 -11.61627 -11.51304 -11.09740 -10.96560 -10.85293 -10.81361 -10.54489 -10.26956 -9.93705 -9.78780 -9.56768 -9.49370 -9.31389 -8.80998 -8.45756 -8.18859 -6.05940 -4.11163 1.95148 2.87337 3.30340 3.35330 3.37600 3.38487 3.73621 4.39610 4.63106 4.78062 4.93442 5.10500 5.15488 5.23539 5.26858 5.32596 5.41059 5.45086 5.49410 5.55298 5.64988 5.71900 5.77947 5.84735 5.89534 5.96921 6.02854 6.11369 6.28029 6.36186 6.38077 6.56598 6.58482 6.69211 6.75726 7.04498 7.27407 7.32588 7.38874 7.50835 7.87035 8.38633 8.53176 8.90161 9.54444 11.03490 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.004127 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.329606 B = 6782.780380 C = 7435.361889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C -0.115 4.115 4 C 0.139 3.861 5 H 0.074 0.926 6 C -0.110 4.110 7 C 0.456 3.544 8 O -0.518 6.518 9 O -0.339 6.339 10 C 0.118 3.882 11 C 0.037 3.963 12 C -0.489 4.489 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.146 4.146 22 O -0.367 6.367 23 C 0.063 3.937 24 C -0.149 4.149 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 12.787 10.961 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.143 4.143 3 C -0.172 4.172 4 C 0.081 3.919 5 H 0.092 0.908 6 C -0.148 4.148 7 C 0.299 3.701 8 O -0.408 6.408 9 O -0.255 6.255 10 C 0.044 3.956 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.242 4.242 21 C -0.184 4.184 22 O -0.286 6.286 23 C -0.014 4.014 24 C -0.206 4.206 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.020 12.374 11.204 17.431 hybrid contribution -0.788 -0.442 -0.772 1.188 sum -5.808 11.932 10.432 16.880 Atomic orbital electron populations 1.23759 0.95108 1.02160 1.01273 1.22257 0.95453 0.96545 1.00071 1.20752 1.00891 0.93891 1.01617 1.20819 0.90955 0.93917 0.86257 0.90761 1.21440 1.01280 0.93909 0.98177 1.23305 0.77170 0.89176 0.80428 1.90598 1.59486 1.52802 1.37870 1.86508 1.59409 1.37898 1.41662 1.22847 0.96268 0.79129 0.97314 1.18780 0.85530 0.98944 0.93063 1.20349 1.31811 0.95508 1.05043 0.91928 1.25011 0.95656 0.95680 0.97080 1.69990 1.43964 1.01742 1.36165 0.86654 0.79857 0.77075 0.84411 1.20127 1.21293 1.20142 1.23001 1.04573 0.96198 1.00447 1.22541 1.03877 0.91436 1.00504 1.87905 1.38258 1.83283 1.19198 1.22415 0.96101 0.97641 0.85243 1.21710 0.99610 1.02522 0.96746 0.88324 0.88031 0.91254 0.91560 0.91794 0.87179 0.86638 0.90717 0.94423 0.92872 0.90088 0.91532 0.91672 0.89471 0.94031 0.92888 0.91697 0.92228 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 13.95 29.02 0.40 -1.35 16 2 C -0.14 -1.53 5.05 -101.06 -0.51 -2.04 16 3 C -0.11 -1.07 9.69 36.01 0.35 -0.72 16 4 C 0.14 1.85 1.78 -27.88 -0.05 1.80 16 5 H 0.07 1.04 7.25 -51.92 -0.38 0.66 16 6 C -0.11 -1.58 5.35 -27.88 -0.15 -1.73 16 7 C 0.46 8.92 7.84 36.01 0.28 9.20 16 8 O -0.52 -11.20 15.17 -24.06 -0.36 -11.56 16 9 O -0.34 -7.60 10.16 -39.25 -0.40 -8.00 16 10 C 0.12 2.86 5.29 37.15 0.20 3.05 16 11 C 0.04 0.94 1.61 -155.66 -0.25 0.69 16 12 C -0.49 -13.42 8.77 -34.44 -0.30 -13.72 16 13 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 14 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 15 N -0.88 -25.00 12.93 55.43 0.72 -24.29 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.20 -4.54 9.96 -26.70 -0.27 -4.80 16 21 C -0.15 -3.44 9.43 -26.69 -0.25 -3.69 16 22 O -0.37 -5.35 9.01 -49.66 -0.45 -5.79 16 23 C 0.06 0.78 6.46 37.16 0.24 1.02 16 24 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 25 H 0.10 0.90 7.84 -52.48 -0.41 0.49 16 26 H 0.10 0.80 8.05 -52.49 -0.42 0.37 16 27 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 1.42 7.66 -51.93 -0.40 1.02 16 31 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.07 2.00 8.13 -51.93 -0.42 1.57 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 37 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -30.51 367.27 -7.46 -37.97 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.46 Total: 1.82 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.02 Total: -11.73 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.72 Total: -24.29 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.21 Total: -25.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.51 -7.46 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756567847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.153 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds