Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00593 * 2 1 4 4 C 1.50707 * 119.99694 * 179.97438 * 2 1 3 5 5 H 1.09009 * 109.46806 * 5.00578 * 4 2 1 6 6 C 1.53000 * 109.47194 * 245.00437 * 4 2 1 7 7 C 1.50703 * 109.46923 * 175.00056 * 6 4 2 8 8 O 1.20824 * 119.99868 * 359.97438 * 7 6 4 9 9 O 1.34232 * 119.99981 * 180.02562 * 7 6 4 10 10 C 1.45193 * 117.00307 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47629 * 179.97438 * 10 9 7 12 12 C 1.50698 * 115.55091 * 294.88972 * 11 10 9 13 13 H 1.07995 * 120.00548 * 95.15680 * 12 11 10 14 14 C 1.37887 * 119.99607 * 274.88498 * 12 11 10 15 15 N 1.31512 * 119.99742 * 6.38500 * 14 12 11 16 16 Si 1.86792 * 120.00001 * 186.38825 * 14 12 11 17 17 H 1.48497 * 109.47138 * 89.99854 * 16 14 12 18 18 H 1.48507 * 109.46983 * 210.00016 * 16 14 12 19 19 H 1.48507 * 109.47143 * 329.99898 * 16 14 12 20 20 C 1.53001 * 117.49567 * 80.55078 * 11 10 9 21 21 C 1.52997 * 117.50058 * 149.21087 * 11 10 9 22 22 O 1.42900 * 109.47003 * 125.00179 * 4 2 1 23 23 C 1.42905 * 113.99764 * 270.00010 * 22 4 2 24 24 C 1.53001 * 109.46623 * 179.97438 * 23 22 4 25 25 H 1.07994 * 120.00338 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99289 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47111 * 269.99933 * 3 2 1 28 28 H 1.09005 * 109.47090 * 29.99697 * 3 2 1 29 29 H 1.08998 * 109.47427 * 149.99455 * 3 2 1 30 30 H 1.09001 * 109.47341 * 55.00049 * 6 4 2 31 31 H 1.09000 * 109.47107 * 294.99620 * 6 4 2 32 32 H 1.09004 * 109.47351 * 59.98882 * 10 9 7 33 33 H 1.09010 * 109.46838 * 299.99816 * 10 9 7 34 34 H 0.97004 * 120.00151 * 179.97438 * 15 14 12 35 35 H 1.09003 * 117.50064 * 215.00337 * 20 11 10 36 36 H 1.08997 * 117.50444 * 0.02833 * 20 11 10 37 37 H 1.08997 * 117.50286 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49777 * 144.98214 * 21 11 10 39 39 H 1.09001 * 109.47081 * 299.99925 * 23 22 4 40 40 H 1.08993 * 109.46729 * 60.00420 * 23 22 4 41 41 H 1.09003 * 109.47166 * 60.00573 * 24 23 22 42 42 H 1.08999 * 109.46797 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47595 * 300.00336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 1 1.3584 -2.1318 -0.0887 6 6 2.8464 -1.4416 1.3080 7 6 3.5007 -2.7981 1.3625 8 8 3.3553 -3.5760 0.4496 9 8 4.2441 -3.1424 2.4258 10 6 4.8446 -4.4642 2.4101 11 6 5.6488 -4.6744 3.6946 12 6 6.8475 -3.7773 3.8652 13 1 6.7621 -2.8644 4.4358 14 6 8.0550 -4.1249 3.2973 15 7 8.1316 -5.1709 2.5039 16 14 9.5819 -3.1100 3.6549 17 1 10.2702 -3.6564 4.8519 18 1 10.4984 -3.1667 2.4878 19 1 9.1908 -1.7001 3.9092 20 6 4.8762 -5.0683 4.9552 21 6 5.7505 -6.1007 4.2390 22 8 2.9709 -1.3318 -1.1030 23 6 2.4138 -1.8777 -2.3005 24 6 3.4679 -1.8560 -3.4092 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 2.2453 1.6196 -1.0277 28 1 1.4746 2.0647 0.5138 29 1 3.0160 1.1746 0.5139 30 1 2.1656 -1.3324 2.1523 31 1 3.6116 -0.6669 1.3558 32 1 5.5068 -4.5523 1.5488 33 1 4.0606 -5.2187 2.3443 34 1 8.9810 -5.4152 2.1040 35 1 5.2351 -4.6787 5.9078 36 1 3.7952 -5.1781 4.8693 37 1 5.2443 -6.8892 3.6822 38 1 6.6847 -6.3902 4.7201 39 1 2.0980 -2.9050 -2.1189 40 1 1.5538 -1.2816 -2.6056 41 1 4.3283 -2.4518 -3.1044 42 1 3.0429 -2.2718 -4.3227 43 1 3.7834 -0.8285 -3.5907 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756567848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -101.650664 kcal Electronic energy + Delta-G solvation = -22649.081991 eV Core-core repulsion = 19274.714127 eV Total energy + Delta-G solvation = -3374.367864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91640 -38.47820 -36.68315 -35.26325 -35.11181 -31.94247 -31.74801 -30.17410 -27.51631 -26.86721 -25.31114 -23.98160 -22.69968 -21.18583 -20.09814 -19.22740 -18.94578 -16.97720 -16.83089 -16.48196 -15.69099 -15.52272 -15.35291 -14.62130 -14.38341 -14.16107 -13.87572 -13.61412 -13.23217 -13.21766 -12.68925 -12.34092 -12.17241 -11.98657 -11.81570 -11.68085 -11.60340 -11.49488 -11.09186 -10.97558 -10.83196 -10.78687 -10.52244 -10.27625 -9.93527 -9.78753 -9.54573 -9.48007 -9.32492 -8.80638 -8.45189 -8.18821 -6.04807 -4.09857 1.94721 2.86683 3.30368 3.37395 3.37970 3.41140 3.75997 4.41292 4.61682 4.77319 4.93116 5.14144 5.14793 5.25040 5.28975 5.34109 5.42349 5.46707 5.48732 5.57396 5.63539 5.71906 5.77984 5.85859 5.92906 6.00987 6.01642 6.18269 6.26669 6.35534 6.37268 6.56458 6.57996 6.68500 6.75042 7.03986 7.30390 7.33123 7.38462 7.50701 7.88607 8.39086 8.53057 8.91655 9.55898 11.04730 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.004229 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.147994 B = 6619.046377 C = 6919.781343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C -0.114 4.114 4 C 0.139 3.861 5 H 0.073 0.927 6 C -0.111 4.111 7 C 0.456 3.544 8 O -0.518 6.518 9 O -0.339 6.339 10 C 0.117 3.883 11 C 0.038 3.962 12 C -0.489 4.489 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 C -0.205 4.205 21 C -0.146 4.146 22 O -0.365 6.365 23 C 0.063 3.937 24 C -0.150 4.150 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.610 8.864 -6.309 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.142 4.142 3 C -0.171 4.171 4 C 0.081 3.919 5 H 0.091 0.909 6 C -0.149 4.149 7 C 0.299 3.701 8 O -0.407 6.407 9 O -0.255 6.255 10 C 0.044 3.956 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.243 4.243 21 C -0.184 4.184 22 O -0.284 6.284 23 C -0.013 4.013 24 C -0.207 4.207 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.283 8.552 -6.663 17.146 hybrid contribution 0.616 0.179 -0.006 0.642 sum -12.667 8.731 -6.669 16.768 Atomic orbital electron populations 1.23756 0.95002 1.02079 1.01624 1.22279 0.95465 0.96627 0.99803 1.20768 1.00388 0.93606 1.02310 1.20807 0.90898 0.93790 0.86426 0.90880 1.21455 1.01271 0.94148 0.98036 1.23298 0.77074 0.89163 0.80535 1.90594 1.59647 1.52823 1.37677 1.86507 1.59155 1.38232 1.41580 1.22853 0.93635 0.77539 1.01543 1.18787 0.94703 0.95152 0.87647 1.20385 0.92113 1.06668 1.33506 0.91873 1.25012 0.98857 0.95128 0.94434 1.69999 1.25651 1.26306 1.29852 0.86585 0.82839 0.80755 0.77819 1.20595 1.21247 1.19718 1.23001 0.95665 1.06974 0.98619 1.22540 0.99992 0.92328 1.03504 1.87950 1.38104 1.83214 1.19165 1.22414 0.96089 0.97504 0.85320 1.21716 0.99683 1.02634 0.96654 0.88421 0.88039 0.91351 0.92034 0.91263 0.86848 0.86919 0.90625 0.94524 0.92928 0.90082 0.91592 0.91686 0.89458 0.92969 0.94100 0.91522 0.91455 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 13.91 29.01 0.40 -1.30 16 2 C -0.14 -1.51 5.05 -101.07 -0.51 -2.02 16 3 C -0.11 -1.10 9.84 36.00 0.35 -0.75 16 4 C 0.14 1.85 1.86 -27.88 -0.05 1.80 16 5 H 0.07 0.98 7.25 -51.92 -0.38 0.61 16 6 C -0.11 -1.60 5.33 -27.88 -0.15 -1.74 16 7 C 0.46 8.91 7.84 36.01 0.28 9.19 16 8 O -0.52 -11.19 15.17 -24.05 -0.36 -11.55 16 9 O -0.34 -7.59 10.16 -39.26 -0.40 -7.99 16 10 C 0.12 2.85 5.28 37.15 0.20 3.05 16 11 C 0.04 0.95 1.61 -155.67 -0.25 0.70 16 12 C -0.49 -13.48 8.77 -34.44 -0.30 -13.78 16 13 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 14 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 15 N -0.88 -25.16 12.93 55.43 0.72 -24.44 16 16 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.21 -4.51 9.96 -26.69 -0.27 -4.77 16 21 C -0.15 -3.43 9.43 -26.69 -0.25 -3.68 16 22 O -0.37 -5.57 9.07 -49.66 -0.45 -6.02 16 23 C 0.06 0.82 6.46 37.16 0.24 1.06 16 24 C -0.15 -1.75 10.28 37.16 0.38 -1.36 16 25 H 0.10 0.83 7.84 -52.49 -0.41 0.42 16 26 H 0.10 0.77 8.04 -52.49 -0.42 0.35 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.07 0.71 7.02 -51.93 -0.36 0.34 16 30 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.11 1.55 7.19 -51.93 -0.37 1.17 16 32 H 0.08 2.04 8.13 -51.93 -0.42 1.62 16 33 H 0.04 0.84 8.09 -51.92 -0.42 0.42 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 39 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -30.82 366.45 -7.42 -38.24 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.40 Total: 1.80 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.02 Total: -11.81 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.72 Total: -24.44 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.21 Total: -25.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.82 -7.42 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756567848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.415 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds