Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 120.00267 * 2 1 4 4 C 1.50700 * 119.99925 * 179.97438 * 2 1 3 5 5 H 1.09000 * 112.91088 * 23.75552 * 4 2 1 6 6 C 1.53779 * 113.61716 * 252.49753 * 4 2 1 7 7 C 1.53780 * 87.08067 * 220.02103 * 6 4 2 8 8 H 1.08999 * 113.61395 * 270.88175 * 7 6 4 9 9 C 1.53006 * 113.69157 * 139.99711 * 7 6 4 10 10 C 1.50693 * 109.47422 * 87.45537 * 9 7 6 11 11 O 1.20828 * 120.00069 * 0.02562 * 10 9 7 12 12 O 1.34229 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.45200 * 117.00102 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46665 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00599 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99353 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47016 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47685 * 119.99833 * 19 17 15 22 22 H 1.48504 * 109.46904 * 239.99783 * 19 17 15 23 23 C 1.53773 * 87.08464 * 25.43542 * 7 6 4 24 24 C 1.52997 * 113.61817 * 89.11609 * 23 7 6 25 25 C 1.53006 * 113.61373 * 219.93665 * 23 7 6 26 26 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47202 * 300.00617 * 1 2 3 28 28 H 1.09009 * 109.47022 * 59.99986 * 1 2 3 29 29 H 1.08996 * 113.61356 * 105.47346 * 6 4 2 30 30 H 1.09005 * 113.69021 * 334.57913 * 6 4 2 31 31 H 1.09003 * 109.47150 * 207.46581 * 9 7 6 32 32 H 1.09004 * 109.46550 * 327.45704 * 9 7 6 33 33 H 1.09004 * 109.47321 * 300.00486 * 13 12 10 34 34 H 1.08995 * 109.47177 * 60.00205 * 13 12 10 35 35 H 1.08993 * 109.46533 * 299.99705 * 14 13 12 36 36 H 1.08991 * 109.47064 * 60.00293 * 14 13 12 37 37 H 0.97008 * 120.00085 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99965 * 24 23 7 39 39 H 1.09001 * 109.46832 * 300.00156 * 24 23 7 40 40 H 1.09004 * 109.47261 * 180.02562 * 24 23 7 41 41 H 1.08995 * 109.46975 * 298.46814 * 25 23 7 42 42 H 1.09005 * 109.46841 * 58.46708 * 25 23 7 43 43 H 1.09002 * 109.47267 * 178.46664 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.6767 -2.1322 -0.4035 6 6 2.9354 -1.6262 1.3445 7 6 4.1328 -2.1433 0.5299 8 1 4.0610 -3.1996 0.2706 9 6 5.4907 -1.7695 1.1279 10 6 5.9043 -2.8171 2.1290 11 8 5.1870 -3.7658 2.3420 12 8 7.0702 -2.6969 2.7833 13 6 7.4043 -3.7436 3.7325 14 6 8.7584 -3.4361 4.3751 15 6 9.1054 -4.5229 5.3598 16 1 8.4282 -5.3503 5.5118 17 6 10.2881 -4.4613 6.0659 18 7 11.1135 -3.4545 5.8797 19 14 10.7187 -5.8086 7.2860 20 1 9.6320 -6.8206 7.3098 21 1 11.9909 -6.4573 6.8788 22 1 10.8750 -5.2189 8.6399 23 6 3.6744 -1.2003 -0.5949 24 6 4.2763 0.2032 -0.5016 25 6 3.7991 -1.8084 -1.9934 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 2.4264 -2.4037 1.9140 30 1 3.1626 -0.7435 1.9424 31 1 6.2344 -1.7125 0.3331 32 1 5.4149 -0.8021 1.6245 33 1 6.6378 -3.7909 4.5061 34 1 7.4568 -4.7010 3.2142 35 1 9.5250 -3.3887 3.6017 36 1 8.7055 -2.4789 4.8935 37 1 11.9454 -3.4110 6.3767 38 1 5.3630 0.1368 -0.5554 39 1 3.9867 0.6605 0.4445 40 1 3.9078 0.8123 -1.3270 41 1 4.8448 -2.0383 -2.1977 42 1 3.2089 -2.7234 -2.0457 43 1 3.4324 -1.0967 -2.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772656906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -125.261209 kcal Electronic energy + Delta-G solvation = -22134.524239 eV Core-core repulsion = 18759.132544 eV Total energy + Delta-G solvation = -3375.391694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39338 -39.78781 -38.18105 -36.02048 -33.34172 -31.65012 -31.42889 -30.30051 -29.63572 -27.55600 -25.58805 -24.51260 -22.78932 -21.27519 -20.57341 -19.52563 -18.46799 -17.28773 -16.43938 -16.22653 -16.10369 -15.79221 -15.37718 -15.25942 -14.71408 -14.47544 -13.98438 -13.61970 -13.55212 -13.02223 -12.89934 -12.55748 -12.48840 -12.40264 -12.36188 -12.23467 -11.93385 -11.67969 -11.22694 -11.17188 -11.11007 -10.99617 -10.75200 -10.70335 -10.61064 -10.24032 -10.09539 -9.62526 -9.58419 -9.29369 -9.25917 -8.44592 -6.10280 -4.14569 1.65583 2.63663 3.21214 3.27413 3.35122 3.40437 3.78159 4.08771 4.26740 4.39919 4.46901 4.54557 4.79534 4.97441 4.99776 5.07137 5.12987 5.22273 5.23691 5.26312 5.38272 5.49820 5.51806 5.56761 5.59481 5.68107 5.73987 5.78022 5.87290 5.90739 6.10361 6.10944 6.14306 6.19847 6.39625 6.65514 7.05589 7.29579 7.57378 7.63349 7.87586 8.21201 8.30528 8.91354 9.49871 11.01302 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037717 B = 0.002689 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.189258 B =10411.939602 C =10507.084795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.365 3.635 3 O -0.451 6.451 4 C -0.163 4.163 5 H 0.113 0.887 6 C -0.112 4.112 7 C -0.087 4.087 8 H 0.106 0.894 9 C -0.106 4.106 10 C 0.454 3.546 11 O -0.520 6.520 12 O -0.359 6.359 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.064 4.064 24 C -0.126 4.126 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.766 6.344 -15.344 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.241 3.759 3 O -0.324 6.324 4 C -0.181 4.181 5 H 0.131 0.869 6 C -0.149 4.149 7 C -0.105 4.105 8 H 0.124 0.876 9 C -0.144 4.144 10 C 0.297 3.703 11 O -0.410 6.410 12 O -0.276 6.276 13 C 0.003 3.997 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.064 4.064 24 C -0.183 4.183 25 C -0.196 4.196 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.450 6.674 -15.187 25.564 hybrid contribution 0.140 -0.985 0.749 1.246 sum -19.310 5.689 -14.438 24.773 Atomic orbital electron populations 1.22310 0.94929 1.04516 1.04505 1.24431 0.91574 0.90027 0.69844 1.90423 1.71191 1.35264 1.35545 1.23345 0.96653 0.97716 1.00435 0.86900 1.22880 0.96307 1.01591 0.94169 1.22498 0.92203 1.00391 0.95422 0.87589 1.21388 0.98175 0.97673 0.97138 1.23608 0.79687 0.86273 0.80685 1.90604 1.53343 1.32960 1.64060 1.86531 1.37096 1.51541 1.52404 1.23605 1.00273 0.87379 0.88452 1.19173 0.88489 0.98206 0.95479 1.21024 1.04824 1.07780 1.22737 0.92231 1.24990 0.96091 0.96046 0.97086 1.69986 1.10884 1.30355 1.41634 0.86421 0.78427 0.81705 0.80795 1.19596 1.20821 1.20825 1.21863 0.93175 0.96736 0.94589 1.21812 0.99408 0.93346 1.03719 1.21779 1.02358 1.00306 0.95115 0.90133 0.89173 0.89240 0.90081 0.89565 0.87660 0.87710 0.92431 0.92420 0.95382 0.95376 0.92765 0.92844 0.90638 0.92351 0.91913 0.92368 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.11 10.33 36.00 0.37 -0.74 16 2 C 0.37 3.05 6.65 -29.04 -0.19 2.86 16 3 O -0.45 -5.13 13.27 6.00 0.08 -5.05 16 4 C -0.16 -1.29 3.52 -90.96 -0.32 -1.61 16 5 H 0.11 0.69 7.94 -51.93 -0.41 0.28 16 6 C -0.11 -1.08 6.83 -25.92 -0.18 -1.26 16 7 C -0.09 -0.91 2.66 -89.81 -0.24 -1.14 16 8 H 0.11 1.19 7.63 -51.93 -0.40 0.80 16 9 C -0.11 -1.28 4.41 -27.88 -0.12 -1.40 16 10 C 0.45 7.76 7.96 36.00 0.29 8.05 16 11 O -0.52 -9.96 15.51 -18.75 -0.29 -10.25 16 12 O -0.36 -7.26 10.22 -39.26 -0.40 -7.67 16 13 C 0.08 1.70 5.40 37.16 0.20 1.91 16 14 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 C -0.06 -0.56 1.23 -153.69 -0.19 -0.75 16 24 C -0.13 -1.23 6.26 37.16 0.23 -1.00 16 25 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 26 H 0.08 0.30 7.96 -51.93 -0.41 -0.11 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.88 7.37 -51.93 -0.38 0.49 16 31 H 0.11 1.12 7.86 -51.93 -0.41 0.71 16 32 H 0.10 1.16 7.33 -51.93 -0.38 0.78 16 33 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 34 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.49 7.23 -51.93 -0.38 0.11 16 39 H 0.07 0.82 5.62 -51.93 -0.29 0.53 16 40 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.40 7.98 -51.93 -0.41 -0.01 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -32.33 351.24 -7.18 -39.51 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -7.21 Total: -3.56 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.37 Total: -8.94 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.61 Total: -22.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.33 -7.18 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772656906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.751 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds