Wall clock time and date at job start Tue Mar 31 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 H 1.09002 * 109.48089 * 305.02588 * 3 2 1 5 5 C 1.53092 * 109.48211 * 185.00124 * 3 2 1 6 6 C 1.53185 * 109.16176 * 297.62771 * 5 3 2 7 7 H 1.09000 * 109.61688 * 62.92708 * 6 5 3 8 8 C 1.50694 * 109.54239 * 183.15196 * 6 5 3 9 9 O 1.20829 * 119.99901 * 359.55119 * 8 6 5 10 10 O 1.34224 * 119.99984 * 179.55808 * 8 6 5 11 11 C 1.45203 * 117.00416 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47448 * 179.97438 * 11 10 8 13 13 C 1.50700 * 115.54836 * 39.88835 * 12 11 10 14 14 H 1.07995 * 120.00414 * 264.96937 * 13 12 11 15 15 C 1.37881 * 119.99705 * 84.97077 * 13 12 11 16 16 N 1.31514 * 120.00302 * 358.49192 * 15 13 12 17 17 Si 1.86800 * 119.99800 * 178.48207 * 15 13 12 18 18 H 1.48508 * 109.46803 * 60.00855 * 17 15 13 19 19 H 1.48505 * 109.47117 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47659 * 300.00453 * 17 15 13 21 21 C 1.52997 * 117.49602 * 254.18201 * 12 11 10 22 22 C 1.52997 * 117.49751 * 185.55955 * 12 11 10 23 23 C 1.53175 * 109.03459 * 303.01922 * 6 5 3 24 24 C 1.53093 * 109.16667 * 56.97799 * 23 6 5 25 25 O 1.42898 * 109.41595 * 302.39499 * 24 23 6 26 26 H 1.09003 * 109.47246 * 59.99438 * 1 2 3 27 27 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46834 * 300.00119 * 1 2 3 29 29 H 1.08998 * 109.46990 * 240.00097 * 2 1 3 30 30 H 1.08994 * 109.47288 * 119.99941 * 2 1 3 31 31 H 1.08991 * 109.52564 * 177.72174 * 5 3 2 32 32 H 1.09004 * 109.51824 * 57.52931 * 5 3 2 33 33 H 1.09001 * 109.46804 * 300.00169 * 11 10 8 34 34 H 1.08998 * 109.47211 * 59.99263 * 11 10 8 35 35 H 0.97003 * 120.00069 * 179.97438 * 16 15 13 36 36 H 1.08999 * 117.50309 * 0.02562 * 21 12 11 37 37 H 1.09003 * 117.49594 * 145.02622 * 21 12 11 38 38 H 1.09005 * 117.49716 * 214.98136 * 22 12 11 39 39 H 1.09004 * 117.49894 * 359.97438 * 22 12 11 40 40 H 1.09007 * 109.52179 * 297.07517 * 23 6 5 41 41 H 1.08996 * 109.57364 * 176.91885 * 23 6 5 42 42 H 1.09005 * 109.47500 * 62.37525 * 24 23 6 43 43 H 1.09000 * 109.48388 * 182.40785 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4446 -0.1258 6 6 4.1716 0.7374 1.0905 7 1 3.8518 -0.3046 1.1047 8 6 5.6752 0.8023 1.0142 9 8 6.2095 1.3500 0.0790 10 8 6.4208 0.2517 1.9850 11 6 7.8627 0.3525 1.8463 12 6 8.5386 -0.3267 3.0390 13 6 7.9007 -1.6108 3.5030 14 1 7.1841 -1.5968 4.3107 15 6 8.2322 -2.8037 2.8961 16 7 9.0824 -2.8172 1.8929 17 14 7.4736 -4.4007 3.4990 18 1 5.9963 -4.3285 3.3652 19 1 7.9889 -5.5315 2.6859 20 1 7.8318 -4.6118 4.9246 21 6 9.1663 0.5757 4.1033 22 6 10.0607 -0.2149 3.1463 23 6 3.6924 1.4378 2.3656 24 6 2.1618 1.4361 2.3952 25 8 1.6632 2.0812 1.2216 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9265 2.4723 -0.1666 32 1 3.8569 0.9190 -1.0353 33 1 8.1741 -0.1379 0.9240 34 1 8.1521 1.4029 1.8147 35 1 9.3159 -3.6565 1.4662 36 1 9.0973 1.6532 3.9540 37 1 9.1179 0.2406 5.1394 38 1 10.6008 -1.0701 3.5527 39 1 10.5806 0.3422 2.3668 40 1 4.0557 2.4656 2.3751 41 1 4.0742 0.9084 3.2385 42 1 1.8001 0.4083 2.4265 43 1 1.8146 1.9709 3.2793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780391277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:33 Heat of formation + Delta-G solvation = -126.910433 kcal Electronic energy + Delta-G solvation = -23165.817433 eV Core-core repulsion = 19790.354223 eV Total energy + Delta-G solvation = -3375.463210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49639 -39.15312 -36.79476 -35.24611 -33.74903 -33.53861 -31.95444 -30.25180 -27.36800 -25.81849 -25.10003 -23.65491 -22.92015 -21.20010 -20.57306 -19.31040 -19.07552 -17.24653 -16.82520 -16.28852 -16.02459 -15.57245 -14.99496 -14.90548 -14.62656 -14.17298 -13.87162 -13.73945 -13.47688 -13.02097 -12.87059 -12.37321 -12.21859 -12.02578 -11.89008 -11.64723 -11.44522 -11.12349 -11.03819 -10.95850 -10.90187 -10.75551 -10.55058 -10.33602 -10.24692 -9.97163 -9.79014 -9.61380 -9.37355 -8.94101 -8.46773 -8.15435 -6.05977 -4.11057 2.77234 3.28581 3.33557 3.33736 3.36287 3.78813 4.38274 4.50688 4.71552 4.80707 4.84038 4.86896 5.04864 5.20353 5.24081 5.25546 5.30819 5.37700 5.52928 5.59227 5.61557 5.68638 5.79853 5.84060 5.90923 5.97367 6.06761 6.11249 6.13849 6.19815 6.24597 6.31429 6.47116 6.65915 6.75020 7.00396 7.14450 7.16476 7.35615 7.48925 7.85924 8.32640 8.50636 8.88986 9.53995 11.03653 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.004832 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.768696 B = 5793.419002 C = 6547.108740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.164 4.164 3 C 0.093 3.907 4 H 0.105 0.895 5 C -0.133 4.133 6 C -0.082 4.082 7 H 0.108 0.892 8 C 0.457 3.543 9 O -0.526 6.526 10 O -0.322 6.322 11 C 0.117 3.883 12 C 0.036 3.964 13 C -0.481 4.481 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.210 4.210 22 C -0.145 4.145 23 C -0.146 4.146 24 C 0.059 3.941 25 O -0.375 6.375 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 6.478 -1.881 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.035 3.965 4 H 0.123 0.877 5 C -0.170 4.170 6 C -0.102 4.102 7 H 0.126 0.874 8 C 0.300 3.700 9 O -0.417 6.417 10 O -0.236 6.236 11 C 0.043 3.957 12 C 0.035 3.965 13 C -0.519 4.519 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.247 4.247 22 C -0.182 4.182 23 C -0.184 4.184 24 C -0.018 4.018 25 O -0.294 6.294 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.466 6.654 -2.257 15.189 hybrid contribution 0.166 -1.207 0.056 1.220 sum -13.300 5.447 -2.201 14.540 Atomic orbital electron populations 1.21694 0.95135 1.01413 1.02183 1.22255 0.97027 0.97435 1.03399 1.22251 0.93209 0.93320 0.87707 0.87734 1.22100 0.95057 1.02413 0.97480 1.21045 0.88739 1.02834 0.97534 0.87440 1.23467 0.90892 0.75156 0.80479 1.90593 1.74669 1.42251 1.34208 1.86575 1.21883 1.69640 1.45524 1.22725 0.74486 0.97364 1.01104 1.18770 0.91521 0.94682 0.91491 1.20247 1.24467 0.89021 1.18122 0.92022 1.24985 0.94796 0.98903 0.94721 1.69985 1.33245 1.26646 1.22207 0.86666 0.79670 0.82892 0.78819 1.20152 1.21337 1.20174 1.23114 1.09136 0.95608 0.96815 1.22521 0.94648 1.00767 1.00302 1.22172 0.96900 1.01964 0.97379 1.22612 0.92471 0.98354 0.88344 1.87966 1.74571 1.53223 1.13650 0.92806 0.92881 0.92205 0.90733 0.90880 0.90089 0.90051 0.91369 0.94308 0.92954 0.91614 0.90069 0.89350 0.91742 0.90661 0.88889 0.92428 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.81 37.16 0.36 -0.90 16 2 C -0.16 -1.59 4.74 -26.73 -0.13 -1.72 16 3 C 0.09 0.99 3.29 -26.68 -0.09 0.91 16 4 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.13 -1.71 4.23 -26.59 -0.11 -1.82 16 6 C -0.08 -1.20 2.41 -91.59 -0.22 -1.43 16 7 H 0.11 1.49 6.74 -51.93 -0.35 1.14 16 8 C 0.46 8.93 7.26 36.00 0.26 9.19 16 9 O -0.53 -11.39 15.72 -18.75 -0.29 -11.68 16 10 O -0.32 -7.19 9.54 -39.24 -0.37 -7.56 16 11 C 0.12 2.76 5.53 37.16 0.21 2.97 16 12 C 0.04 0.88 1.81 -155.66 -0.28 0.60 16 13 C -0.48 -12.91 8.24 -34.44 -0.28 -13.19 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.86 5.41 -17.82 -0.10 1.76 16 16 N -0.88 -24.86 12.80 55.43 0.71 -24.15 16 17 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 C -0.21 -4.52 9.88 -26.73 -0.26 -4.79 16 22 C -0.14 -3.36 9.33 -26.73 -0.25 -3.61 16 23 C -0.15 -1.87 5.35 -26.59 -0.14 -2.01 16 24 C 0.06 0.63 6.52 37.21 0.24 0.87 16 25 O -0.38 -4.43 10.13 -35.23 -0.36 -4.79 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 31 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.76 8.13 -51.93 -0.42 1.33 16 34 H 0.04 0.86 7.94 -51.93 -0.41 0.44 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 0.57 6.23 -51.93 -0.32 0.25 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -29.82 346.52 -8.11 -37.94 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.21 Total: 2.34 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.79 Total: -13.17 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.03 Total: -24.03 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.82 -8.11 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780391277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.973 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds