Wall clock time and date at job start Tue Mar 31 2020 05:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47126 * 2 1 4 4 H 1.09002 * 109.48089 * 305.02588 * 3 2 1 5 5 C 1.53092 * 109.48211 * 185.00124 * 3 2 1 6 6 C 1.53185 * 109.16176 * 297.62771 * 5 3 2 7 7 H 1.09000 * 109.61688 * 62.92708 * 6 5 3 8 8 C 1.50694 * 109.54239 * 183.15196 * 6 5 3 9 9 O 1.20829 * 119.99901 * 359.55119 * 8 6 5 10 10 O 1.34224 * 119.99984 * 179.55808 * 8 6 5 11 11 C 1.45203 * 117.00416 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47448 * 179.97438 * 11 10 8 13 13 C 1.50700 * 115.54836 * 39.88835 * 12 11 10 14 14 H 1.07995 * 120.00414 * 264.96937 * 13 12 11 15 15 C 1.37881 * 119.99705 * 84.97077 * 13 12 11 16 16 N 1.31514 * 120.00302 * 358.49192 * 15 13 12 17 17 Si 1.86800 * 119.99800 * 178.48207 * 15 13 12 18 18 H 1.48508 * 109.46803 * 60.00855 * 17 15 13 19 19 H 1.48505 * 109.47117 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47659 * 300.00453 * 17 15 13 21 21 C 1.52997 * 117.49602 * 254.18201 * 12 11 10 22 22 C 1.52997 * 117.49751 * 185.55955 * 12 11 10 23 23 C 1.53175 * 109.03459 * 303.01922 * 6 5 3 24 24 C 1.53093 * 109.16667 * 56.97799 * 23 6 5 25 25 O 1.42898 * 109.41595 * 302.39499 * 24 23 6 26 26 H 1.09003 * 109.47246 * 59.99438 * 1 2 3 27 27 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46834 * 300.00119 * 1 2 3 29 29 H 1.08998 * 109.46990 * 240.00097 * 2 1 3 30 30 H 1.08994 * 109.47288 * 119.99941 * 2 1 3 31 31 H 1.08991 * 109.52564 * 177.72174 * 5 3 2 32 32 H 1.09004 * 109.51824 * 57.52931 * 5 3 2 33 33 H 1.09001 * 109.46804 * 300.00169 * 11 10 8 34 34 H 1.08998 * 109.47211 * 59.99263 * 11 10 8 35 35 H 0.97003 * 120.00069 * 179.97438 * 16 15 13 36 36 H 1.08999 * 117.50309 * 0.02562 * 21 12 11 37 37 H 1.09003 * 117.49594 * 145.02622 * 21 12 11 38 38 H 1.09005 * 117.49716 * 214.98136 * 22 12 11 39 39 H 1.09004 * 117.49894 * 359.97438 * 22 12 11 40 40 H 1.09007 * 109.52179 * 297.07517 * 23 6 5 41 41 H 1.08996 * 109.57364 * 176.91885 * 23 6 5 42 42 H 1.09005 * 109.47500 * 62.37525 * 24 23 6 43 43 H 1.09000 * 109.48388 * 182.40785 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4446 -0.1258 6 6 4.1716 0.7374 1.0905 7 1 3.8518 -0.3046 1.1047 8 6 5.6752 0.8023 1.0142 9 8 6.2095 1.3500 0.0790 10 8 6.4208 0.2517 1.9850 11 6 7.8627 0.3525 1.8463 12 6 8.5386 -0.3267 3.0390 13 6 7.9007 -1.6108 3.5030 14 1 7.1841 -1.5968 4.3107 15 6 8.2322 -2.8037 2.8961 16 7 9.0824 -2.8172 1.8929 17 14 7.4736 -4.4007 3.4990 18 1 5.9963 -4.3285 3.3652 19 1 7.9889 -5.5315 2.6859 20 1 7.8318 -4.6118 4.9246 21 6 9.1663 0.5757 4.1033 22 6 10.0607 -0.2149 3.1463 23 6 3.6924 1.4378 2.3656 24 6 2.1618 1.4361 2.3952 25 8 1.6632 2.0812 1.2216 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9265 2.4723 -0.1666 32 1 3.8569 0.9190 -1.0353 33 1 8.1741 -0.1379 0.9240 34 1 8.1521 1.4029 1.8147 35 1 9.3159 -3.6565 1.4662 36 1 9.0973 1.6532 3.9540 37 1 9.1179 0.2406 5.1394 38 1 10.6008 -1.0701 3.5527 39 1 10.5806 0.3422 2.3668 40 1 4.0557 2.4656 2.3751 41 1 4.0742 0.9084 3.2385 42 1 1.8001 0.4083 2.4265 43 1 1.8146 1.9709 3.2793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780391277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:32 Heat of formation + Delta-G solvation = -142.199741 kcal Electronic energy + Delta-G solvation = -23166.480427 eV Core-core repulsion = 19790.354223 eV Total energy + Delta-G solvation = -3376.126204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82395 -40.42239 -38.58634 -36.98885 -34.86792 -34.35324 -34.00213 -31.13096 -29.03717 -27.50624 -26.65809 -24.60641 -23.86293 -22.99014 -21.94647 -21.21979 -20.10918 -18.72411 -18.43782 -17.70146 -17.35984 -16.94534 -16.56518 -16.42376 -15.85942 -15.66178 -15.05903 -14.90502 -14.64889 -14.44777 -14.10060 -13.75824 -13.65639 -13.49550 -13.09469 -12.94269 -12.81922 -12.77647 -12.46796 -12.39984 -12.13429 -12.04365 -11.87671 -11.77251 -11.63120 -11.57721 -11.37546 -11.04551 -10.88457 -10.48501 -10.38892 -10.02624 -8.11318 -6.22056 1.20089 1.43056 1.43718 1.51172 1.81677 2.43427 2.93304 3.18167 3.35523 3.47906 3.66214 3.69852 3.87246 3.99832 4.13863 4.14581 4.23346 4.33204 4.35870 4.41706 4.46377 4.59859 4.62645 4.68347 4.78011 4.80867 4.86192 4.89976 4.95439 5.01865 5.05858 5.14851 5.16221 5.20443 5.30454 5.37064 5.45455 5.57689 5.71564 5.76367 6.28212 6.35411 6.79010 6.85437 7.45967 8.97675 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.004832 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.768696 B = 5793.419002 C = 6547.108740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.098 3.902 4 H 0.121 0.879 5 C -0.128 4.128 6 C -0.077 4.077 7 H 0.118 0.882 8 C 0.451 3.549 9 O -0.551 6.551 10 O -0.335 6.335 11 C 0.127 3.873 12 C 0.002 3.998 13 C -0.491 4.491 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.914 5.914 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.269 1.269 21 C -0.181 4.181 22 C -0.148 4.148 23 C -0.142 4.142 24 C 0.062 3.938 25 O -0.383 6.383 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 6.658 -1.177 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.040 3.960 4 H 0.139 0.861 5 C -0.166 4.166 6 C -0.096 4.096 7 H 0.136 0.864 8 C 0.296 3.704 9 O -0.443 6.443 10 O -0.250 6.250 11 C 0.053 3.947 12 C 0.002 3.998 13 C -0.529 4.529 14 H 0.075 0.925 15 C -0.178 4.178 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.218 4.218 22 C -0.186 4.186 23 C -0.180 4.180 24 C -0.014 4.014 25 O -0.302 6.302 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.412 6.845 -1.540 16.934 hybrid contribution 0.783 -1.212 -0.182 1.455 sum -14.629 5.632 -1.722 15.770 Atomic orbital electron populations 1.21666 0.94061 1.01931 1.02423 1.22253 0.97924 0.96508 1.03392 1.22299 0.91298 0.94338 0.88022 0.86140 1.22106 0.96779 1.01253 0.96485 1.21219 0.84855 1.04014 0.99549 0.86449 1.24511 0.92606 0.73896 0.79358 1.90571 1.75528 1.43270 1.34964 1.86581 1.21219 1.70412 1.46742 1.22436 0.75598 0.97443 0.99250 1.18907 0.92275 0.95340 0.93273 1.20496 1.24317 0.90258 1.17833 0.92522 1.25695 0.95270 1.01931 0.94858 1.70106 1.34601 1.27137 1.23361 0.85736 0.79104 0.79104 0.78496 1.19408 1.21360 1.19408 1.23126 1.05896 0.96564 0.96187 1.22439 0.93966 1.00807 1.01355 1.22179 0.98708 1.01149 0.95986 1.22698 0.90491 0.99441 0.88788 1.87967 1.74431 1.53742 1.14085 0.92036 0.92252 0.92504 0.90317 0.91377 0.91350 0.90323 0.94605 0.93062 0.93209 0.89020 0.89511 0.91258 0.90705 0.91277 0.89288 0.91290 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.81 71.98 0.71 -1.40 16 2 C -0.16 -2.81 4.74 30.60 0.15 -2.66 16 3 C 0.10 1.90 3.29 30.63 0.10 2.00 16 4 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.13 -3.19 4.23 30.69 0.13 -3.06 16 6 C -0.08 -2.21 2.41 -11.42 -0.03 -2.24 16 7 H 0.12 3.13 6.74 -2.39 -0.02 3.12 16 8 C 0.45 17.76 7.26 71.23 0.52 18.28 16 9 O -0.55 -24.27 15.72 21.96 0.35 -23.92 16 10 O -0.33 -15.08 9.54 -51.36 -0.49 -15.57 16 11 C 0.13 6.08 5.53 71.98 0.40 6.48 16 12 C 0.00 0.12 1.81 -52.93 -0.10 0.03 16 13 C -0.49 -26.45 8.24 25.60 0.21 -26.23 16 14 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 15 C 0.02 1.20 5.41 84.66 0.46 1.66 16 16 N -0.91 -52.27 12.80 21.45 0.27 -52.00 16 17 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.18 -7.54 9.88 30.59 0.30 -7.24 16 22 C -0.15 -6.86 9.33 30.59 0.29 -6.58 16 23 C -0.14 -3.45 5.35 30.68 0.16 -3.29 16 24 C 0.06 1.18 6.52 72.01 0.47 1.65 16 25 O -0.38 -8.13 10.13 -148.98 -1.51 -9.64 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.87 7.83 -2.38 -0.02 0.86 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.24 4.98 -2.39 -0.01 1.23 16 31 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 34 H 0.05 2.27 7.94 -2.39 -0.02 2.25 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.09 3.34 8.08 -2.39 -0.02 3.32 16 37 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.07 3.44 8.14 -2.38 -0.02 3.42 16 39 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 1.18 6.23 -2.38 -0.01 1.16 16 43 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -63.74 346.52 5.39 -58.35 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.98 Total: 20.63 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.76 Total: -22.60 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.27 Total: -52.00 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.65 Total: -49.13 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.74 5.39 -58.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780391277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.846 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds