Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.77922 * 2 1 4 4 C 1.51273 * 109.62528 * 239.52851 * 2 1 3 5 5 O 1.20758 * 120.85079 * 8.90914 * 4 2 1 6 6 C 1.51267 * 118.29713 * 188.93552 * 4 2 1 7 7 C 1.53234 * 108.53775 * 51.34742 * 6 4 2 8 8 C 1.52953 * 109.40263 * 305.36801 * 7 6 4 9 9 H 1.08996 * 109.42007 * 303.56664 * 8 7 6 10 10 C 1.50703 * 109.41414 * 183.70432 * 8 7 6 11 11 O 1.20826 * 120.00022 * 326.99479 * 10 8 7 12 12 O 1.34227 * 119.99853 * 146.99946 * 10 8 7 13 13 C 1.45202 * 116.99768 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47313 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47164 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00243 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99804 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46579 * 59.99887 * 19 17 15 21 21 H 1.48500 * 109.47180 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47018 * 299.99980 * 19 17 15 23 23 C 1.52961 * 109.81544 * 63.60072 * 8 7 6 24 24 C 1.53001 * 109.48544 * 56.37922 * 23 8 7 25 25 C 1.53003 * 109.48371 * 176.42162 * 23 8 7 26 26 H 1.09003 * 109.46674 * 180.47195 * 1 2 3 27 27 H 1.08999 * 109.47131 * 300.47582 * 1 2 3 28 28 H 1.08998 * 109.47005 * 60.47564 * 1 2 3 29 29 H 1.09004 * 109.62774 * 291.62932 * 6 4 2 30 30 H 1.08997 * 109.62456 * 171.06073 * 6 4 2 31 31 H 1.09002 * 109.48063 * 185.39330 * 7 6 4 32 32 H 1.08994 * 109.48910 * 65.35897 * 7 6 4 33 33 H 1.09005 * 109.46629 * 299.99419 * 13 12 10 34 34 H 1.08997 * 109.47519 * 59.98988 * 13 12 10 35 35 H 1.09005 * 109.46435 * 299.99274 * 14 13 12 36 36 H 1.09004 * 109.47255 * 59.98855 * 14 13 12 37 37 H 0.97002 * 120.00256 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47019 * 59.99749 * 24 23 8 39 39 H 1.08997 * 109.47252 * 180.02562 * 24 23 8 40 40 H 1.09004 * 109.46720 * 300.00485 * 24 23 8 41 41 H 1.09002 * 109.47053 * 55.15498 * 25 23 8 42 42 H 1.08998 * 109.47547 * 175.15787 * 25 23 8 43 43 H 1.09007 * 109.47070 * 295.15990 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0381 -0.7226 -1.2281 5 8 1.2814 -1.0544 -2.1087 6 6 3.5183 -1.0193 -1.3244 7 6 3.9609 -1.7144 -0.0325 8 6 3.5677 -0.8528 1.1685 9 1 4.0039 0.1402 1.0604 10 6 4.0827 -1.4910 2.4329 11 8 4.1473 -2.6945 2.5191 12 8 4.4694 -0.7226 3.4632 13 6 4.9551 -1.4055 4.6490 14 6 5.3470 -0.3729 5.7078 15 6 5.8504 -1.0817 6.9386 16 1 5.8869 -2.1608 6.9634 17 6 6.2645 -0.3525 8.0331 18 7 6.2206 0.9615 8.0027 19 14 6.8880 -1.2311 9.5592 20 1 8.0729 -2.0541 9.2071 21 1 7.2696 -0.2288 10.5863 22 1 5.8178 -2.1089 10.0970 23 6 2.0448 -0.7321 1.2437 24 6 1.4245 -2.1293 1.3066 25 6 1.6566 0.0557 2.4966 26 1 -0.3633 -1.0277 0.0085 27 1 -0.3633 0.5212 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 4.0712 -0.0879 -1.4470 30 1 3.7057 -1.6742 -2.1753 31 1 5.0424 -1.8494 -0.0446 32 1 3.4739 -2.6867 0.0425 33 1 4.1703 -2.0510 5.0434 34 1 5.8255 -2.0084 4.3902 35 1 6.1319 0.2723 5.3130 36 1 4.4767 0.2304 5.9666 37 1 6.5116 1.4745 8.7729 38 1 1.7918 -2.6504 2.1908 39 1 0.3393 -2.0431 1.3598 40 1 1.7009 -2.6900 0.4136 41 1 2.1670 1.0188 2.4929 42 1 0.5784 0.2158 2.5057 43 1 1.9478 -0.5064 3.3840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781314558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -156.199778 kcal Electronic energy + Delta-G solvation = -23170.318723 eV Core-core repulsion = 19793.585432 eV Total energy + Delta-G solvation = -3376.733291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37148 -39.71711 -37.61539 -36.06603 -33.86354 -33.37196 -31.32678 -30.26820 -28.06193 -27.50482 -25.74467 -25.10989 -22.92920 -21.13895 -20.83897 -20.00701 -18.32323 -17.41176 -16.60320 -16.29722 -16.07143 -15.94456 -15.53537 -15.18359 -14.81316 -14.53030 -13.73050 -13.64743 -13.29400 -13.11169 -12.82548 -12.66541 -12.41041 -12.30386 -12.13117 -12.01759 -11.95520 -11.62480 -11.48902 -11.22224 -11.09129 -10.96352 -10.83279 -10.73464 -10.69678 -10.63845 -10.10226 -9.67074 -9.60048 -9.56159 -9.33100 -8.46670 -6.12952 -4.17482 1.70808 2.50116 3.09435 3.28106 3.32383 3.35961 3.75930 4.23167 4.28311 4.35944 4.45951 4.69484 4.80690 4.91006 4.95811 5.07136 5.10631 5.18123 5.23621 5.34349 5.40910 5.51357 5.58224 5.62587 5.69962 5.72089 5.79234 5.82190 5.86334 5.96232 5.98834 6.05773 6.08453 6.25589 6.27845 6.60750 6.97436 7.25280 7.52671 7.59107 7.83898 8.16346 8.24202 8.87841 9.47093 10.98391 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035295 B = 0.003431 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.129968 B = 8159.915036 C = 8426.022799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 H 0.109 0.891 4 C 0.366 3.634 5 O -0.454 6.454 6 C -0.168 4.168 7 C -0.105 4.105 8 C -0.080 4.080 9 H 0.108 0.892 10 C 0.464 3.536 11 O -0.514 6.514 12 O -0.354 6.354 13 C 0.074 3.926 14 C 0.026 3.974 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.040 4.040 24 C -0.156 4.156 25 C -0.149 4.149 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -0.402 -17.209 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 H 0.127 0.873 4 C 0.241 3.759 5 O -0.327 6.327 6 C -0.206 4.206 7 C -0.142 4.142 8 C -0.099 4.099 9 H 0.126 0.874 10 C 0.307 3.693 11 O -0.403 6.403 12 O -0.270 6.270 13 C 0.002 3.998 14 C -0.011 4.011 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.040 4.040 24 C -0.213 4.213 25 C -0.206 4.206 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.892 -0.774 -17.487 19.634 hybrid contribution 0.609 -0.470 1.059 1.309 sum -8.283 -1.244 -16.428 18.440 Atomic orbital electron populations 1.21779 0.92793 1.03064 1.02350 1.21912 0.98254 1.00978 0.93582 0.87286 1.24887 0.90817 0.74486 0.85727 1.90386 1.60098 1.42481 1.39716 1.22330 0.95054 1.03408 0.99802 1.21504 1.02773 0.99357 0.90567 1.21162 0.96419 1.01658 0.90699 0.87423 1.23238 0.74538 0.86142 0.85377 1.90621 1.51196 1.16073 1.82428 1.86553 1.73448 1.42057 1.24927 1.23633 0.97587 0.97206 0.81387 1.19149 0.97650 0.93731 0.90586 1.20944 1.43945 0.93189 0.98536 0.92357 1.24973 0.95450 0.94864 0.98774 1.69958 1.46997 1.05038 1.30819 0.86543 0.79390 0.79265 0.82171 1.20064 1.21106 1.20058 1.20414 0.91741 0.96729 0.95153 1.22157 1.01102 0.94950 1.03115 1.22021 1.01915 1.00663 0.96014 0.91725 0.91398 0.92020 0.87955 0.88786 0.89937 0.89556 0.92414 0.92402 0.95409 0.95385 0.92643 0.91184 0.91584 0.92328 0.91331 0.91674 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.87 37.16 0.29 -0.93 16 2 C -0.13 -1.12 2.26 -91.37 -0.21 -1.33 16 3 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.37 3.60 5.60 -28.48 -0.16 3.44 16 5 O -0.45 -5.81 16.86 6.00 0.10 -5.71 16 6 C -0.17 -1.35 6.17 -27.48 -0.17 -1.52 16 7 C -0.10 -1.03 4.52 -26.63 -0.12 -1.15 16 8 C -0.08 -0.90 1.87 -91.81 -0.17 -1.07 16 9 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.46 7.40 5.22 36.01 0.19 7.59 16 11 O -0.51 -9.39 14.92 -18.75 -0.28 -9.67 16 12 O -0.35 -6.59 9.61 -39.25 -0.38 -6.97 16 13 C 0.07 1.60 5.40 37.16 0.20 1.80 16 14 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 15 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.04 -0.41 0.32 -154.41 -0.05 -0.46 16 24 C -0.16 -1.74 7.06 37.16 0.26 -1.48 16 25 C -0.15 -1.62 7.79 37.16 0.29 -1.33 16 26 H 0.06 0.60 6.31 -51.93 -0.33 0.27 16 27 H 0.07 0.51 6.55 -51.93 -0.34 0.17 16 28 H 0.06 0.53 8.04 -51.93 -0.42 0.12 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.94 6.03 -51.93 -0.31 0.63 16 33 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 0.93 6.63 -51.93 -0.34 0.58 16 39 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 40 H 0.06 0.65 5.61 -51.93 -0.29 0.36 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.60 6.42 -51.93 -0.33 0.27 16 43 H 0.07 0.89 6.98 -51.92 -0.36 0.53 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -31.26 335.90 -6.81 -38.07 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.83 Total: -2.46 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.20 Total: -9.22 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.56 Total: -22.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.26 -6.81 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781314558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.134 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds