Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48504 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47093 * 299.99872 * 3 2 1 6 6 H 1.48503 * 109.46848 * 59.99833 * 3 2 1 7 7 C 1.37880 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52394 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.28382 * 177.62381 * 10 9 7 12 12 N 1.46852 * 109.52017 * 300.82835 * 11 10 9 13 13 C 1.46906 * 110.99827 * 185.83833 * 12 11 10 14 14 C 1.52996 * 109.46956 * 169.99791 * 13 12 11 15 15 C 1.53003 * 109.46880 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.46975 * 179.97438 * 15 14 13 17 17 C 1.47096 * 125.55709 * 89.99886 * 16 15 14 18 18 C 1.54092 * 103.77523 * 180.02562 * 17 16 15 19 19 O 1.45707 * 104.00725 * 359.97438 * 18 17 16 20 20 C 1.33768 * 109.47544 * 0.02562 * 19 18 17 21 21 O 1.21516 * 123.07049 * 179.97438 * 20 19 18 22 22 C 1.46838 * 111.20163 * 61.73618 * 12 11 10 23 23 C 1.53031 * 109.52790 * 298.25734 * 22 12 11 24 24 H 0.96994 * 120.00272 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.52383 * 59.87571 * 9 7 2 26 26 H 1.09007 * 109.49827 * 57.68050 * 10 9 7 27 27 H 1.08998 * 109.50667 * 297.57392 * 10 9 7 28 28 H 1.08999 * 109.46353 * 180.81199 * 11 10 9 29 29 H 1.08996 * 109.45273 * 60.82928 * 11 10 9 30 30 H 1.09004 * 109.46966 * 49.99884 * 13 12 11 31 31 H 1.09000 * 109.46753 * 289.99849 * 13 12 11 32 32 H 1.08993 * 109.47525 * 59.99858 * 14 13 12 33 33 H 1.09000 * 109.47437 * 299.99639 * 14 13 12 34 34 H 1.08995 * 109.47356 * 60.00111 * 15 14 13 35 35 H 1.09004 * 109.46728 * 299.99487 * 15 14 13 36 36 H 1.09003 * 110.56430 * 298.59126 * 17 16 15 37 37 H 1.08996 * 110.56794 * 61.44970 * 17 16 15 38 38 H 1.08997 * 110.52567 * 118.63189 * 18 17 16 39 39 H 1.09001 * 110.52071 * 241.37331 * 18 17 16 40 40 H 1.09009 * 109.46225 * 58.27677 * 22 12 11 41 41 H 1.09006 * 109.46359 * 178.23831 * 22 12 11 42 42 H 1.09003 * 109.50696 * 299.24074 * 23 22 12 43 43 H 1.09001 * 109.50632 * 179.11809 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4754 -4.9851 0.0604 12 7 0.6534 -5.0195 1.2769 13 6 0.0071 -6.3288 1.4387 14 6 -0.6316 -6.4141 2.8263 15 6 -1.3042 -7.7780 2.9951 16 7 -1.9153 -7.8600 4.3241 17 6 -3.2906 -7.4601 4.6593 18 6 -3.4006 -7.7535 6.1680 19 8 -2.0898 -8.2829 6.5208 20 6 -1.3125 -8.3113 5.4325 21 8 -0.1647 -8.7098 5.4476 22 6 -0.3403 -3.9384 1.2770 23 6 0.3752 -2.5859 1.2535 24 1 -0.4850 0.8400 -0.0004 25 1 0.6228 -2.5570 -0.8883 26 1 2.8992 -3.5840 0.8689 27 1 2.8432 -3.6320 -0.9102 28 1 2.1807 -5.8160 0.0751 29 1 0.8318 -5.0703 -0.8151 30 1 0.7521 -7.1173 1.3325 31 1 -0.7623 -6.4508 0.6764 32 1 -1.3765 -5.6256 2.9326 33 1 0.1378 -6.2921 3.5887 34 1 -0.5589 -8.5662 2.8891 35 1 -2.0737 -7.9004 2.2328 36 1 -3.4389 -6.3980 4.4640 37 1 -4.0103 -8.0574 4.0996 38 1 -3.6046 -6.8370 6.7217 39 1 -4.1757 -8.4961 6.3573 40 1 -0.9754 -4.0287 0.3956 41 1 -0.9538 -4.0091 2.1752 42 1 0.9999 -2.4891 2.1415 43 1 -0.3628 -1.7839 1.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782090142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -75.269890 kcal Electronic energy + Delta-G solvation = -22431.354057 eV Core-core repulsion = 19090.422900 eV Total energy + Delta-G solvation = -3340.931157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72597 -38.42920 -37.35450 -36.27564 -34.30850 -32.42731 -30.79841 -29.79844 -29.48116 -26.50568 -24.75046 -23.91973 -22.56685 -21.97327 -21.04181 -20.51957 -18.58700 -17.62553 -17.42989 -17.03754 -16.36656 -15.51774 -15.20289 -14.69781 -14.49828 -14.41110 -14.36961 -13.93197 -13.71853 -13.34248 -12.90117 -12.66021 -12.58615 -12.52403 -11.98935 -11.91215 -11.44415 -11.31309 -10.96603 -10.94604 -10.78144 -10.72864 -10.57136 -10.38867 -10.19342 -9.96524 -9.40498 -9.17655 -8.94149 -8.67703 -8.28607 -7.74484 -5.96605 -4.01401 2.20206 2.56585 3.20722 3.30976 3.39049 3.43703 3.81442 4.26783 4.36741 4.38769 4.46548 4.83601 4.88634 5.04730 5.12894 5.19405 5.23576 5.33968 5.42086 5.55189 5.71147 5.77142 5.89875 6.03401 6.10195 6.16284 6.24586 6.32194 6.35389 6.62749 6.65159 6.87455 7.10255 7.12135 7.18003 7.44866 7.63257 7.70833 7.84114 7.85034 8.06436 8.16652 8.50001 9.02545 9.62969 11.09670 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.003132 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.072417 B = 8939.057911 C = 9407.555167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.536 5.536 13 C 0.059 3.941 14 C -0.135 4.135 15 C 0.148 3.852 16 N -0.629 5.629 17 C 0.063 3.937 18 C 0.041 3.959 19 O -0.331 6.331 20 C 0.641 3.359 21 O -0.519 6.519 22 C 0.056 3.944 23 C -0.105 4.105 24 H 0.258 0.742 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 -15.589 6.969 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.066 4.066 12 N -0.261 5.261 13 C -0.070 4.070 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.377 5.377 17 C -0.060 4.060 18 C -0.034 4.034 19 O -0.241 6.241 20 C 0.395 3.605 21 O -0.404 6.404 22 C -0.071 4.071 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.880 -15.672 7.595 20.023 hybrid contribution -0.391 0.963 -0.782 1.300 sum -10.271 -14.709 6.814 19.191 Atomic orbital electron populations 1.69884 1.05867 1.26130 1.51375 1.24970 0.94845 0.99016 0.95242 0.86579 0.80235 0.83971 0.77467 1.19814 1.21165 1.21090 1.21264 0.92949 0.90678 1.49765 0.92696 1.18685 0.92713 0.91786 0.93909 1.21684 0.98730 0.93747 1.00325 1.22107 0.95679 0.99345 0.89494 1.61956 1.23680 1.01943 1.38495 1.21930 0.97172 0.92948 0.94940 1.22014 1.00691 0.96034 0.98688 1.21359 0.97579 0.99010 0.79326 1.48097 1.13465 1.66340 1.09781 1.22827 0.84805 1.03065 0.95330 1.24289 0.83359 1.01311 0.94419 1.87286 1.25354 1.78827 1.32668 1.18510 0.84888 0.77685 0.79406 1.91062 1.13584 1.51655 1.84077 1.22309 0.93134 0.93179 0.98448 1.21659 1.00187 0.93005 0.99431 0.93220 0.96215 0.92462 0.93185 0.92408 0.95871 0.91168 0.95432 0.91363 0.90436 0.89330 0.89844 0.88783 0.89018 0.87538 0.87695 0.96097 0.92625 0.93858 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 11.37 55.43 0.63 -24.73 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 10 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 11 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 12 N -0.54 -9.47 4.66 -234.67 -1.09 -10.56 16 13 C 0.06 0.80 4.96 -3.82 -0.02 0.79 16 14 C -0.14 -1.66 5.47 -26.73 -0.15 -1.81 16 15 C 0.15 1.44 6.01 -4.04 -0.02 1.42 16 16 N -0.63 -6.32 2.96 -178.84 -0.53 -6.85 16 17 C 0.06 0.36 7.70 -3.15 -0.02 0.33 16 18 C 0.04 0.22 8.23 37.73 0.31 0.53 16 19 O -0.33 -3.74 11.09 -37.82 -0.42 -4.16 16 20 C 0.64 8.60 8.85 53.71 0.48 9.08 16 21 O -0.52 -9.19 17.54 -19.12 -0.34 -9.52 16 22 C 0.06 1.09 5.29 -3.84 -0.02 1.07 16 23 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.85 6.43 -51.93 -0.33 0.51 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.93 7.92 -51.93 -0.41 0.51 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.06 0.97 6.21 -51.93 -0.32 0.65 16 42 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -33.11 341.55 -9.21 -42.32 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.26 Total: -3.69 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.33 Total: -4.31 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.99 Total: -42.14 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.75 Total: -13.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.11 -9.21 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782090142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.950 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds