Wall clock time and date at job start Tue Mar 31 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47239 * 270.00257 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 175.14052 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21590 * 120.00303 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47293 * 179.97438 * 15 14 12 17 17 O 1.42899 * 109.46778 * 64.99968 * 16 15 14 18 18 C 1.42902 * 113.99816 * 180.02562 * 17 16 15 19 19 C 1.53783 * 113.61146 * 249.13698 * 18 17 16 20 20 C 1.53964 * 87.01926 * 220.04726 * 19 18 17 21 21 C 1.53781 * 87.10827 * 25.36307 * 20 19 18 22 22 C 1.53000 * 117.49749 * 129.25937 * 9 7 2 23 23 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 24 24 H 0.96997 * 120.00397 * 4.99464 * 1 2 3 25 25 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 26 26 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 27 27 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 28 28 H 0.96991 * 120.00475 * 0.02562 * 14 12 11 29 29 H 1.08997 * 109.46910 * 300.00341 * 15 14 12 30 30 H 1.09000 * 109.46842 * 59.99932 * 15 14 12 31 31 H 1.08995 * 109.47200 * 184.99813 * 16 15 14 32 32 H 1.09005 * 109.46798 * 305.00460 * 16 15 14 33 33 H 1.09001 * 112.85092 * 20.33147 * 18 17 16 34 34 H 1.09004 * 113.61491 * 334.56437 * 19 18 17 35 35 H 1.09003 * 113.61566 * 105.46974 * 19 18 17 36 36 H 1.08999 * 113.53166 * 270.81366 * 20 19 18 37 37 H 1.09003 * 113.66271 * 139.93055 * 20 19 18 38 38 H 1.09006 * 113.61275 * 220.08656 * 21 20 19 39 39 H 1.08998 * 113.69173 * 89.20109 * 21 20 19 40 40 H 1.08997 * 117.50142 * 359.97438 * 22 9 7 41 41 H 1.09000 * 117.49511 * 145.02011 * 22 9 7 42 42 H 1.08996 * 117.49909 * 214.98045 * 23 9 7 43 43 H 1.09006 * 117.50020 * 359.97109 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0296 -3.9814 4.0153 14 7 3.2456 -4.0320 4.1593 15 6 3.1885 -4.5908 5.5123 16 6 4.6099 -4.8022 6.0373 17 8 5.2588 -3.5368 6.1780 18 6 6.5998 -3.6222 6.6643 19 6 6.7747 -3.0696 8.0887 20 6 8.1043 -2.4633 7.6038 21 6 7.5019 -2.4711 6.1889 22 6 1.5730 -3.5795 -0.9303 23 6 0.2452 -2.8210 -1.0000 24 1 -0.4850 0.8368 -0.0731 25 1 0.3751 -2.1632 2.0411 26 1 0.3015 -3.8512 1.4812 27 1 3.0164 -3.0733 1.8316 28 1 4.1039 -3.8565 3.7429 29 1 2.6573 -3.9010 6.1682 30 1 2.6643 -5.5462 5.4890 31 1 4.5691 -5.2993 7.0064 32 1 5.1684 -5.4208 5.3347 33 1 7.0397 -4.6092 6.5218 34 1 6.0287 -2.3235 8.3624 35 1 6.8974 -3.8444 8.8456 36 1 8.9560 -3.1335 7.7194 37 1 8.2959 -1.4627 7.9913 38 1 8.2109 -2.7633 5.4141 39 1 6.9549 -1.5615 5.9407 40 1 2.3245 -3.3491 -1.6853 41 1 1.5428 -4.6172 -0.5978 42 1 -0.6578 -3.3599 -0.7135 43 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797466761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:03 Heat of formation + Delta-G solvation = -37.876447 kcal Electronic energy + Delta-G solvation = -21997.117836 eV Core-core repulsion = 18657.808180 eV Total energy + Delta-G solvation = -3339.309656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.63620 -39.17724 -36.89585 -36.39011 -34.03531 -33.16468 -31.91460 -29.32917 -26.12809 -25.90572 -25.10592 -24.74787 -22.48497 -21.12823 -20.25072 -19.91288 -19.33789 -17.67169 -17.47261 -16.40254 -15.94305 -15.59873 -15.25573 -14.84823 -14.64285 -14.49243 -13.92745 -13.72188 -13.32475 -12.90524 -12.69712 -12.66206 -12.55618 -12.31747 -11.82759 -11.60015 -11.49508 -11.15568 -10.96894 -10.96133 -10.89726 -10.66685 -10.49788 -10.19588 -9.72156 -9.61479 -9.40164 -8.99790 -8.77290 -8.44062 -8.18626 -7.91443 -6.03135 -4.12619 3.27919 3.28523 3.36733 3.38434 3.47574 3.87894 4.30617 4.34471 4.38696 4.54664 4.58231 4.86849 4.88522 5.02894 5.06325 5.22176 5.25028 5.39698 5.43425 5.52186 5.58872 5.65894 5.68682 5.87263 5.90870 6.04384 6.08595 6.39578 6.52988 6.64529 6.74853 6.83230 6.91180 7.06952 7.16337 7.39547 7.47211 7.51397 7.68633 7.85300 8.38685 8.73505 8.88528 9.27370 9.54237 11.04099 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003777 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.840189 B = 7412.005408 C = 8604.433130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.607 6.607 14 N -0.749 5.749 15 C 0.144 3.856 16 C 0.050 3.950 17 O -0.368 6.368 18 C 0.060 3.940 19 C -0.158 4.158 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.396 0.604 28 H 0.396 0.604 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.414 -8.607 12.223 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.487 6.487 14 N -0.407 5.407 15 C 0.019 3.981 16 C -0.027 4.027 17 O -0.287 6.287 18 C 0.002 3.998 19 C -0.195 4.195 20 C -0.180 4.180 21 C -0.175 4.175 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.230 0.770 28 H 0.230 0.770 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.119 -8.496 12.719 20.151 hybrid contribution 1.314 0.890 -0.349 1.625 sum 14.434 -7.606 12.370 20.474 Atomic orbital electron populations 1.69989 1.05864 1.26812 1.48405 1.24981 0.94813 0.98928 0.94350 0.86627 0.79964 0.83625 0.77999 1.20749 1.21198 1.19826 1.20340 0.92577 0.88617 1.52101 0.92282 1.19050 0.99303 0.93243 0.85986 1.20840 0.83325 0.97643 0.92329 1.45138 1.11208 1.66671 1.14307 1.16047 0.83887 0.78740 0.81585 1.90863 1.27958 1.60838 1.69039 1.44982 1.07791 1.70915 1.16974 1.21092 0.94291 0.99476 0.83198 1.22844 0.93524 0.86355 1.00019 1.88063 1.26035 1.28599 1.85979 1.23749 0.83090 0.98555 0.94359 1.23520 0.97934 1.01074 0.97021 1.22688 0.96820 1.01696 0.96822 1.23202 0.97801 0.99487 0.97014 1.23008 1.00679 0.95622 1.05535 1.22462 0.90795 1.01307 1.03461 0.92912 0.91779 0.94463 0.77010 0.77042 0.91095 0.90523 0.91866 0.92655 0.89711 0.89149 0.91490 0.90137 0.90772 0.91013 0.88912 0.90478 0.91751 0.91816 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.61 12.65 55.43 0.70 -23.91 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.88 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -13.02 8.59 -34.44 -0.30 -13.31 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.02 0.60 1.47 -155.66 -0.23 0.37 16 10 C 0.18 4.28 5.50 -4.04 -0.02 4.26 16 11 N -0.72 -14.65 5.48 -65.22 -0.36 -15.01 16 12 C 0.70 13.93 8.57 -86.91 -0.74 13.18 16 13 O -0.61 -14.42 16.34 5.29 0.09 -14.33 16 14 N -0.75 -11.30 5.51 -65.22 -0.36 -11.66 16 15 C 0.14 1.83 6.06 -4.04 -0.02 1.81 16 16 C 0.05 0.47 5.92 37.16 0.22 0.69 16 17 O -0.37 -4.15 10.30 -35.23 -0.36 -4.52 16 18 C 0.06 0.53 4.30 -25.92 -0.11 0.42 16 19 C -0.16 -1.25 7.93 -25.82 -0.20 -1.45 16 20 C -0.14 -1.00 8.09 -25.82 -0.21 -1.21 16 21 C -0.14 -1.16 7.91 -25.92 -0.21 -1.37 16 22 C -0.21 -4.48 9.96 -26.69 -0.27 -4.74 16 23 C -0.14 -3.31 9.14 -26.70 -0.24 -3.56 16 24 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 25 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 26 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.40 7.37 8.35 -40.82 -0.34 7.03 16 28 H 0.40 5.15 8.49 -40.82 -0.35 4.80 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.24 361.07 -9.71 -40.95 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.40 Total: 10.21 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.43 Total: -3.04 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.02 Total: -50.58 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.28 Total: -18.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.24 -9.71 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797466761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.074 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds