Wall clock time and date at job start Tue Mar 31 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48505 * 109.47087 * 239.99854 * 3 2 1 5 5 H 1.48497 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99954 * 173.55554 * 7 2 1 9 9 C 1.50698 * 120.00018 * 353.55794 * 7 2 1 10 10 C 1.52999 * 115.54799 * 85.40564 * 9 7 2 11 11 N 1.46500 * 109.47336 * 65.14418 * 10 9 7 12 12 C 1.34778 * 119.99948 * 178.28759 * 11 10 9 13 13 O 1.21587 * 120.00015 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99771 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00058 * 179.71934 * 14 12 11 16 16 H 1.08997 * 109.46938 * 325.27953 * 15 14 12 17 17 C 1.52995 * 109.46716 * 85.27264 * 15 14 12 18 18 O 1.42904 * 109.47261 * 65.00372 * 17 15 14 19 19 C 1.52994 * 109.47424 * 205.27363 * 15 14 12 20 20 C 1.53010 * 109.46913 * 65.00197 * 19 15 14 21 21 C 1.52998 * 117.49875 * 243.62079 * 20 19 15 22 22 C 1.52995 * 117.49655 * 174.99673 * 20 19 15 23 23 C 1.52993 * 117.49725 * 231.07361 * 9 7 2 24 24 C 1.52996 * 117.49565 * 299.73148 * 9 7 2 25 25 H 0.97000 * 120.00568 * 5.06692 * 1 2 3 26 26 H 1.08997 * 109.47175 * 305.13569 * 10 9 7 27 27 H 1.09007 * 109.46774 * 185.14098 * 10 9 7 28 28 H 0.96997 * 119.99971 * 358.28291 * 11 10 9 29 29 H 0.96997 * 120.00147 * 359.97438 * 14 12 11 30 30 H 1.09000 * 109.47032 * 185.00138 * 17 15 14 31 31 H 1.09000 * 109.47544 * 305.00304 * 17 15 14 32 32 H 0.96701 * 114.00454 * 179.97438 * 18 17 15 33 33 H 1.09003 * 109.47021 * 184.99843 * 19 15 14 34 34 H 1.08992 * 109.47677 * 305.00271 * 19 15 14 35 35 H 1.08997 * 115.55014 * 29.33096 * 20 19 15 36 36 H 1.09004 * 117.49553 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.49791 * 145.02017 * 21 20 19 38 38 H 1.08999 * 117.49803 * 214.97924 * 22 20 19 39 39 H 1.08996 * 117.50380 * 359.97438 * 22 20 19 40 40 H 1.09002 * 117.50194 * 215.00516 * 23 9 7 41 41 H 1.09001 * 117.50080 * 0.02562 * 23 9 7 42 42 H 1.08999 * 117.50407 * 359.97438 * 24 9 7 43 43 H 1.09009 * 117.49536 * 144.97690 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7023 -3.0859 -1.1519 11 7 1.8114 -3.4582 -2.0337 12 6 1.5602 -4.0343 -3.2260 13 8 0.4132 -4.2454 -3.5695 14 7 2.5805 -4.3763 -4.0373 15 6 2.3078 -5.0082 -5.3307 16 1 1.4351 -5.6551 -5.2422 17 6 2.0371 -3.9273 -6.3792 18 8 3.2201 -3.1511 -6.5796 19 6 3.5186 -5.8405 -5.7571 20 6 3.7138 -6.9972 -4.7747 21 6 5.0050 -7.0170 -3.9543 22 6 4.8075 -8.0183 -5.0942 23 6 1.7471 -3.4738 1.2148 24 6 0.4418 -2.7018 1.4227 25 1 -0.4851 0.8367 -0.0742 26 1 0.0755 -2.3455 -1.6490 27 1 0.1077 -3.9703 -0.9228 28 1 2.7264 -3.2900 -1.7594 29 1 3.4956 -4.2075 -3.7634 30 1 1.7474 -4.3973 -7.3190 31 1 1.2316 -3.2794 -6.0336 32 1 3.1215 -2.4455 -7.2334 33 1 3.3517 -6.2383 -6.7582 34 1 4.4090 -5.2119 -5.7597 35 1 2.8067 -7.3648 -4.2951 36 1 5.7157 -6.2062 -4.1147 37 1 4.9475 -7.3975 -2.9345 38 1 4.6200 -9.0576 -4.8242 39 1 5.3877 -7.8664 -6.0043 40 1 1.6727 -4.5387 0.9943 41 1 2.6083 -3.1766 1.8132 42 1 0.4449 -1.8970 2.1577 43 1 -0.4916 -3.2584 1.3388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:46 Heat of formation + Delta-G solvation = -42.306336 kcal Electronic energy + Delta-G solvation = -22662.840503 eV Core-core repulsion = 19323.338753 eV Total energy + Delta-G solvation = -3339.501750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65224 -37.98758 -36.85009 -36.51190 -34.18979 -33.17270 -31.94217 -30.34175 -26.75076 -26.05293 -24.99676 -22.49339 -21.61481 -21.12121 -20.54619 -20.07439 -19.33096 -17.79051 -17.21761 -16.52727 -15.88051 -15.22156 -15.04187 -14.66796 -14.57523 -14.22166 -13.97722 -13.73449 -13.29869 -13.21611 -12.72658 -12.57808 -12.21501 -11.71730 -11.63754 -11.54578 -11.31740 -11.16034 -10.97378 -10.89095 -10.52746 -10.34842 -10.24085 -10.03849 -9.96262 -9.65964 -9.44643 -8.93733 -8.72707 -8.46386 -8.21134 -7.89882 -6.04627 -4.12978 3.28807 3.30563 3.34560 3.36163 3.69464 3.86279 4.34267 4.37710 4.44142 4.76319 4.81977 4.92614 5.08023 5.23170 5.24410 5.35384 5.40781 5.44764 5.51008 5.56510 5.74816 5.78485 5.93092 5.97045 6.02327 6.07502 6.27150 6.37991 6.51105 6.64189 6.72782 6.90803 6.92777 7.11951 7.40115 7.47588 7.51722 7.61131 7.70322 7.84331 8.37675 8.76183 8.87545 9.29862 9.53414 11.03208 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.004357 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.835737 B = 6424.408043 C = 7014.710583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.610 6.610 14 N -0.738 5.738 15 C 0.174 3.826 16 H 0.097 0.903 17 C 0.060 3.940 18 O -0.569 6.569 19 C -0.090 4.090 20 C -0.148 4.148 21 C -0.178 4.178 22 C -0.185 4.185 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.395 0.605 29 H 0.395 0.605 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.375 0.625 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -10.995 -11.242 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.490 6.490 14 N -0.393 5.393 15 C 0.068 3.932 16 H 0.115 0.885 17 C -0.019 4.019 18 O -0.374 6.374 19 C -0.128 4.128 20 C -0.166 4.166 21 C -0.215 4.215 22 C -0.222 4.222 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.229 0.771 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.221 0.779 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.938 -11.458 -11.002 17.334 hybrid contribution 0.944 1.540 -0.148 1.813 sum 7.882 -9.918 -11.150 16.877 Atomic orbital electron populations 1.69964 1.05874 1.26974 1.48258 1.24974 0.94786 0.98883 0.94335 0.86702 0.79658 0.83259 0.78603 1.20286 1.21312 1.20224 1.20290 0.92753 0.88634 1.52002 0.92321 1.19038 0.98536 0.93867 0.85791 1.20817 0.86674 0.96541 0.90028 1.45124 1.11219 1.63645 1.17223 1.16069 0.84620 0.78736 0.80734 1.90849 1.19964 1.62268 1.75962 1.45003 1.08495 1.67023 1.18807 1.20771 0.98592 0.92156 0.81725 0.88498 1.22734 0.87628 0.93951 0.97579 1.86453 1.36258 1.49415 1.65233 1.21369 0.98764 0.94755 0.97930 1.22323 0.93695 0.98857 1.01752 1.23020 0.99979 1.02144 0.96379 1.22947 1.03315 0.95761 1.00128 1.23011 0.98609 0.95678 1.07481 1.22486 0.92274 1.01069 1.02766 0.92832 0.91341 0.94843 0.77126 0.77120 0.93391 0.92661 0.77851 0.90490 0.90380 0.87811 0.88781 0.88966 0.89124 0.89008 0.91674 0.90442 0.89860 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 12.91 55.43 0.72 -23.79 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.50 -12.96 8.63 -34.44 -0.30 -13.26 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.68 1.38 -155.67 -0.21 0.46 16 10 C 0.18 4.27 5.50 -4.04 -0.02 4.25 16 11 N -0.72 -14.47 5.48 -65.23 -0.36 -14.83 16 12 C 0.70 13.59 8.53 -86.92 -0.74 12.85 16 13 O -0.61 -14.02 16.00 5.29 0.08 -13.94 16 14 N -0.74 -10.93 4.75 -58.68 -0.28 -11.21 16 15 C 0.17 2.21 2.33 -67.93 -0.16 2.05 16 16 H 0.10 1.35 7.57 -51.93 -0.39 0.95 16 17 C 0.06 0.73 6.85 37.16 0.25 0.99 16 18 O -0.57 -6.58 12.83 -35.23 -0.45 -7.03 16 19 C -0.09 -0.90 4.75 -26.73 -0.13 -1.03 16 20 C -0.15 -1.48 5.47 -90.62 -0.50 -1.98 16 21 C -0.18 -1.69 10.18 -26.73 -0.27 -1.96 16 22 C -0.18 -1.60 10.25 -26.73 -0.27 -1.87 16 23 C -0.21 -4.43 9.96 -26.70 -0.27 -4.69 16 24 C -0.15 -3.41 9.42 -26.70 -0.25 -3.66 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 27 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.40 7.33 8.38 -40.82 -0.34 6.99 16 29 H 0.40 5.27 8.62 -40.82 -0.35 4.92 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.38 2.89 9.12 45.56 0.42 3.31 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.82 7.46 -51.93 -0.39 0.43 16 35 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 42 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 43 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -30.80 362.53 -9.32 -40.12 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.51 Total: 15.44 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.96 Total: -5.97 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.08 Total: -49.82 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.37 Total: -20.96 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.80 -9.32 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.190 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds