Wall clock time and date at job start Tue Mar 31 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.46926 * 239.99406 * 3 2 1 5 5 H 1.48500 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47169 * 119.99999 * 3 2 1 7 7 C 1.37874 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99983 * 173.56173 * 7 2 1 9 9 C 1.50703 * 120.00042 * 353.56470 * 7 2 1 10 10 C 1.52994 * 115.55139 * 85.40202 * 9 7 2 11 11 N 1.46508 * 109.47177 * 65.14187 * 10 9 7 12 12 C 1.34774 * 119.99874 * 178.28816 * 11 10 9 13 13 O 1.21582 * 120.00269 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99627 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99620 * 180.02562 * 14 12 11 16 16 H 1.08994 * 109.47613 * 34.99244 * 15 14 12 17 17 C 1.53004 * 109.46864 * 274.99091 * 15 14 12 18 18 O 1.42894 * 109.47548 * 295.00486 * 17 15 14 19 19 C 1.53003 * 109.46883 * 154.99768 * 15 14 12 20 20 C 1.52999 * 109.47010 * 294.99335 * 19 15 14 21 21 C 1.53000 * 117.50239 * 243.62416 * 20 19 15 22 22 C 1.53002 * 60.00122 * 252.51145 * 21 20 19 23 23 C 1.52999 * 117.49483 * 231.07353 * 9 7 2 24 24 C 1.52998 * 117.49294 * 299.73148 * 9 7 2 25 25 H 0.97002 * 119.99942 * 5.07028 * 1 2 3 26 26 H 1.09001 * 109.47150 * 305.14555 * 10 9 7 27 27 H 1.09000 * 109.47310 * 185.13955 * 10 9 7 28 28 H 0.96995 * 119.99845 * 358.28880 * 11 10 9 29 29 H 0.97000 * 120.00271 * 359.97438 * 14 12 11 30 30 H 1.08997 * 109.46909 * 174.99893 * 17 15 14 31 31 H 1.09007 * 109.46910 * 55.00558 * 17 15 14 32 32 H 0.96700 * 114.00266 * 180.02562 * 18 17 15 33 33 H 1.08999 * 109.47564 * 54.99900 * 19 15 14 34 34 H 1.09003 * 109.46874 * 174.99793 * 19 15 14 35 35 H 1.09003 * 115.54832 * 29.33068 * 20 19 15 36 36 H 1.09005 * 117.49478 * 0.02562 * 21 20 19 37 37 H 1.08994 * 117.50074 * 145.01597 * 21 20 19 38 38 H 1.08997 * 117.49562 * 252.50890 * 22 21 20 39 39 H 1.08999 * 117.51572 * 107.48079 * 22 21 20 40 40 H 1.09005 * 117.49623 * 215.00060 * 23 9 7 41 41 H 1.08998 * 117.50230 * 0.02562 * 23 9 7 42 42 H 1.08992 * 117.50602 * 359.97438 * 24 9 7 43 43 H 1.09006 * 117.49401 * 144.97765 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1970 -0.1044 9 6 1.2581 -2.4950 0.1474 10 6 0.7022 -3.0868 -1.1493 11 7 1.8114 -3.4599 -2.0308 12 6 1.5602 -4.0370 -3.2225 13 8 0.4133 -4.2484 -3.5660 14 7 2.5807 -4.3806 -4.0332 15 6 2.3077 -5.0074 -5.3289 16 1 1.3918 -4.5910 -5.7482 17 6 2.1422 -6.5167 -5.1405 18 8 3.3796 -7.0804 -4.7010 19 6 3.4738 -4.7372 -6.2819 20 6 3.5611 -3.2369 -6.5685 21 6 3.3316 -2.7784 -8.0100 22 6 4.7395 -2.7461 -7.4120 23 6 1.7469 -3.4728 1.2178 24 6 0.4416 -2.7005 1.4249 25 1 -0.4850 0.8368 -0.0742 26 1 0.0756 -2.3468 -1.6471 27 1 0.1076 -3.9710 -0.9195 28 1 2.7264 -3.2915 -1.7566 29 1 3.4958 -4.2122 -3.7590 30 1 1.8518 -6.9714 -6.0876 31 1 1.3708 -6.7073 -4.3943 32 1 3.3485 -8.0368 -4.5611 33 1 4.4034 -5.0743 -5.8233 34 1 3.3127 -5.2766 -7.2152 35 1 3.2073 -2.5844 -5.7702 36 1 3.1180 -3.5458 -8.7542 37 1 2.8266 -1.8243 -8.1604 38 1 5.1608 -1.7707 -7.1689 39 1 5.4528 -3.4922 -7.7624 40 1 1.6724 -4.5379 0.9981 41 1 2.6080 -3.1751 1.8160 42 1 0.4446 -1.8951 2.1592 43 1 -0.4919 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:50 Heat of formation + Delta-G solvation = -42.126327 kcal Electronic energy + Delta-G solvation = -22587.224498 eV Core-core repulsion = 19247.730554 eV Total energy + Delta-G solvation = -3339.493944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66981 -37.97787 -36.86651 -36.53790 -34.24240 -33.18635 -31.94933 -30.30523 -26.79085 -26.07026 -25.00518 -22.46865 -21.62413 -21.13221 -20.47127 -20.08452 -19.34261 -17.88121 -17.26518 -16.39538 -15.80596 -15.43255 -15.10823 -14.66744 -14.55832 -14.15166 -13.97510 -13.69762 -13.58168 -13.23505 -12.65072 -12.37341 -12.17997 -11.72500 -11.61496 -11.54302 -11.46526 -11.17003 -10.98176 -10.89838 -10.53209 -10.31154 -10.24452 -10.14856 -9.84744 -9.67475 -9.46116 -8.94434 -8.75040 -8.47119 -8.22191 -7.91336 -6.05383 -4.13813 3.27754 3.28501 3.34018 3.35362 3.73523 3.84077 4.28904 4.36851 4.46449 4.78495 4.85254 4.91547 5.11481 5.22669 5.23650 5.35804 5.38726 5.41760 5.54484 5.56160 5.70423 5.78264 5.94000 6.02443 6.05832 6.12368 6.29460 6.37641 6.50570 6.63608 6.72616 6.89369 6.90948 7.11589 7.39008 7.46491 7.50832 7.54880 7.68460 7.83566 8.36978 8.74373 8.86754 9.28046 9.52634 11.02498 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.004667 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.417743 B = 5998.729614 C = 7247.433823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.608 6.608 14 N -0.740 5.740 15 C 0.173 3.827 16 H 0.099 0.901 17 C 0.061 3.939 18 O -0.569 6.569 19 C -0.088 4.088 20 C -0.153 4.153 21 C -0.182 4.182 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.396 0.604 29 H 0.396 0.604 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.374 0.626 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -10.363 -11.921 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.489 6.489 14 N -0.396 5.396 15 C 0.067 3.933 16 H 0.117 0.883 17 C -0.018 4.018 18 O -0.373 6.373 19 C -0.126 4.126 20 C -0.171 4.171 21 C -0.219 4.219 22 C -0.219 4.219 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.229 0.771 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.220 0.780 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.522 -9.769 -12.187 16.926 hybrid contribution 0.975 0.578 0.292 1.171 sum 7.497 -9.192 -11.894 16.798 Atomic orbital electron populations 1.69966 1.05877 1.26992 1.48218 1.24975 0.94785 0.98879 0.94343 0.86703 0.79657 0.83275 0.78590 1.20324 1.21296 1.20208 1.20291 0.92746 0.88634 1.52034 0.92317 1.19040 0.98554 0.93877 0.85785 1.20824 0.86660 0.96546 0.90044 1.45137 1.11249 1.63648 1.17190 1.16071 0.84616 0.78659 0.80849 1.90851 1.19968 1.62448 1.75602 1.45060 1.08510 1.66983 1.19065 1.20756 0.99376 0.89865 0.83333 0.88331 1.22733 0.86247 0.94551 0.98249 1.86464 1.34203 1.26325 1.90346 1.21346 0.99001 0.93379 0.98890 1.22403 1.02934 0.97006 0.94728 1.23022 0.99532 1.03047 0.96312 1.22940 0.91385 1.02729 1.04828 1.23013 0.98606 0.95678 1.07462 1.22487 0.92279 1.01069 1.02760 0.92809 0.91280 0.94855 0.77106 0.77075 0.93359 0.92788 0.77957 0.90196 0.90815 0.87235 0.88977 0.88996 0.88956 0.88994 0.91676 0.90429 0.89853 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.47 12.91 55.43 0.72 -23.75 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.92 8.63 -34.44 -0.30 -13.22 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 11 N -0.72 -14.41 5.48 -65.22 -0.36 -14.77 16 12 C 0.70 13.54 8.53 -86.92 -0.74 12.80 16 13 O -0.61 -13.97 16.01 5.29 0.08 -13.89 16 14 N -0.74 -10.92 4.46 -58.67 -0.26 -11.18 16 15 C 0.17 2.21 2.35 -67.93 -0.16 2.05 16 16 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 17 C 0.06 0.70 6.85 37.16 0.25 0.96 16 18 O -0.57 -6.02 12.83 -35.23 -0.45 -6.47 16 19 C -0.09 -0.91 4.75 -26.73 -0.13 -1.04 16 20 C -0.15 -1.69 5.61 -90.62 -0.51 -2.19 16 21 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16 22 C -0.18 -1.76 10.25 -26.73 -0.27 -2.03 16 23 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 24 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 27 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 28 H 0.40 7.28 8.38 -40.82 -0.34 6.94 16 29 H 0.40 5.19 8.62 -40.82 -0.35 4.83 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.37 2.44 9.12 45.56 0.42 2.86 16 33 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 34 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 35 H 0.11 1.44 7.69 -51.93 -0.40 1.04 16 36 H 0.09 0.80 8.03 -51.93 -0.42 0.39 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -30.75 362.01 -9.31 -40.05 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -6.49 Total: 15.41 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.98 Total: -6.54 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.10 Total: -49.70 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.37 Total: -20.36 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.75 -9.31 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.076 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds