Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48502 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47175 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47364 * 60.00270 * 3 2 1 7 7 C 1.37870 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00457 * 173.55793 * 7 2 1 9 9 C 1.50706 * 119.99833 * 353.55860 * 7 2 1 10 10 C 1.53005 * 115.55070 * 85.41424 * 9 7 2 11 11 N 1.46490 * 109.47369 * 65.12140 * 10 9 7 12 12 C 1.34777 * 120.00145 * 178.21385 * 11 10 9 13 13 O 1.21579 * 119.99560 * 0.27735 * 12 11 10 14 14 N 1.34776 * 119.99795 * 180.27830 * 12 11 10 15 15 C 1.46506 * 119.99595 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47077 * 35.00204 * 15 14 12 17 17 C 1.53004 * 109.47056 * 154.99879 * 15 14 12 18 18 C 1.52999 * 109.47118 * 294.99876 * 17 15 14 19 19 O 1.42894 * 109.47153 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47087 * 274.99899 * 15 14 12 21 21 C 1.53009 * 117.49633 * 128.74766 * 20 15 14 22 22 C 1.52995 * 117.49966 * 60.08892 * 20 15 14 23 23 C 1.53004 * 117.49860 * 231.07695 * 9 7 2 24 24 C 1.53002 * 117.49956 * 299.74092 * 9 7 2 25 25 H 0.97003 * 120.00760 * 5.05229 * 1 2 3 26 26 H 1.09001 * 109.46721 * 305.12514 * 10 9 7 27 27 H 1.08995 * 109.47001 * 185.13021 * 10 9 7 28 28 H 0.97005 * 120.00365 * 358.49125 * 11 10 9 29 29 H 0.96996 * 120.00890 * 0.02562 * 14 12 11 30 30 H 1.08992 * 109.46948 * 55.00162 * 17 15 14 31 31 H 1.09002 * 109.47032 * 174.99961 * 17 15 14 32 32 H 1.09006 * 109.47348 * 299.99922 * 18 17 15 33 33 H 1.09002 * 109.47100 * 60.00126 * 18 17 15 34 34 H 0.96701 * 114.00286 * 179.97438 * 19 18 17 35 35 H 1.08998 * 115.54888 * 274.41355 * 20 15 14 36 36 H 1.08997 * 117.49692 * 359.97438 * 21 20 15 37 37 H 1.08995 * 117.49555 * 145.02071 * 21 20 15 38 38 H 1.09000 * 117.50111 * 214.97713 * 22 20 15 39 39 H 1.09000 * 117.49715 * 359.97438 * 22 20 15 40 40 H 1.08996 * 117.49859 * 215.00066 * 23 9 7 41 41 H 1.09005 * 117.49510 * 0.02953 * 23 9 7 42 42 H 1.09004 * 117.49650 * 359.97133 * 24 9 7 43 43 H 1.08997 * 117.49658 * 144.98050 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7024 -3.0860 -1.1520 11 7 1.8115 -3.4579 -2.0337 12 6 1.5606 -4.0354 -3.2254 13 8 0.4135 -4.2431 -3.5706 14 7 2.5813 -4.3826 -4.0341 15 6 2.3084 -5.0099 -5.3297 16 1 1.3944 -4.5912 -5.7508 17 6 3.4767 -4.7439 -6.2812 18 6 3.5688 -3.2440 -6.5690 19 8 4.6603 -2.9956 -7.4572 20 6 2.1383 -6.5185 -5.1402 21 6 0.8868 -7.1684 -5.7340 22 6 1.0127 -6.9922 -4.2186 23 6 1.7470 -3.4739 1.2149 24 6 0.4415 -2.7018 1.4226 25 1 -0.4851 0.8367 -0.0740 26 1 0.0755 -2.3457 -1.6491 27 1 0.1079 -3.9705 -0.9229 28 1 2.7267 -3.2922 -1.7583 29 1 3.4964 -4.2173 -3.7586 30 1 4.4046 -5.0832 -5.8209 31 1 3.3155 -5.2837 -7.2143 32 1 2.6408 -2.9048 -7.0294 33 1 3.7300 -2.7042 -5.6359 34 1 4.7783 -2.0630 -7.6841 35 1 3.0600 -7.1003 -5.1491 36 1 0.1846 -6.5211 -6.2592 37 1 0.9852 -8.1779 -6.1331 38 1 1.1937 -7.8860 -3.6214 39 1 0.3936 -6.2291 -3.7470 40 1 1.6725 -4.5387 0.9944 41 1 2.6081 -3.1765 1.8134 42 1 0.4445 -1.8968 2.1576 43 1 -0.4918 -3.2584 1.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -40.908904 kcal Electronic energy + Delta-G solvation = -22723.644584 eV Core-core repulsion = 19384.203431 eV Total energy + Delta-G solvation = -3339.441153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87975 -37.80524 -36.87232 -36.49212 -34.25123 -33.19622 -31.98742 -31.05446 -26.67261 -25.73083 -24.83713 -22.21554 -21.71446 -21.25333 -20.64478 -20.15658 -19.39560 -17.89173 -17.33692 -16.39382 -15.94633 -15.54068 -15.09119 -14.86576 -14.69083 -14.26787 -13.93649 -13.81448 -13.48890 -13.15909 -12.68167 -12.22527 -11.96148 -11.77105 -11.64455 -11.58744 -11.23000 -11.13695 -11.04136 -10.91732 -10.53898 -10.27726 -10.25002 -10.10366 -10.06079 -9.69786 -9.48997 -8.96490 -8.73799 -8.51301 -8.26200 -7.97339 -6.09228 -4.17708 3.15228 3.22761 3.32089 3.33822 3.75341 3.88098 4.09211 4.33424 4.82369 4.83403 4.87277 4.92801 5.11981 5.18376 5.19307 5.27575 5.35788 5.41897 5.57696 5.64009 5.75618 5.85789 5.99158 6.02662 6.10451 6.23320 6.34006 6.46862 6.54354 6.61964 6.69591 6.82180 6.86668 7.08524 7.34357 7.41832 7.44895 7.46734 7.61352 7.80042 8.33172 8.67287 8.83296 9.21959 9.49038 10.98652 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.004772 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.377313 B = 5865.544965 C = 7171.308746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.701 3.299 13 O -0.600 6.600 14 N -0.748 5.748 15 C 0.199 3.801 16 H 0.089 0.911 17 C -0.121 4.121 18 C 0.074 3.926 19 O -0.578 6.578 20 C -0.170 4.170 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.210 4.210 24 C -0.147 4.147 25 H 0.261 0.739 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.395 0.605 29 H 0.392 0.608 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.380 0.620 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 -9.044 -10.373 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.060 3.940 11 N -0.372 5.372 12 C 0.401 3.599 13 O -0.481 6.481 14 N -0.404 5.404 15 C 0.093 3.907 16 H 0.107 0.893 17 C -0.159 4.159 18 C -0.004 4.004 19 O -0.384 6.384 20 C -0.190 4.190 21 C -0.212 4.212 22 C -0.215 4.215 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.229 0.771 29 H 0.226 0.774 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.311 -9.719 -10.541 15.289 hybrid contribution 1.191 1.681 0.293 2.081 sum 6.502 -8.038 -10.248 14.557 Atomic orbital electron populations 1.69982 1.05877 1.26798 1.48352 1.24977 0.94781 0.98907 0.94352 0.86595 0.80153 0.83934 0.77636 1.19763 1.21094 1.20938 1.20362 0.92793 0.88605 1.51850 0.92237 1.19064 0.98601 0.93908 0.85819 1.20826 0.86611 0.96611 0.90001 1.45161 1.11267 1.63637 1.17121 1.16010 0.84668 0.78490 0.80744 1.90791 1.19911 1.61931 1.75438 1.45234 1.08401 1.67127 1.19597 1.20168 0.98231 0.89954 0.82339 0.89307 1.21742 0.98716 0.95399 1.00047 1.22202 0.88849 0.96507 0.92853 1.86418 1.52597 1.31369 1.68022 1.22649 0.93627 0.95688 1.07046 1.22906 0.99830 1.01185 0.97261 1.23333 1.01992 1.03576 0.92633 1.23017 0.98621 0.95682 1.07443 1.22489 0.92291 1.01068 1.02718 0.92901 0.91255 0.94761 0.77150 0.77410 0.90714 0.89736 0.93492 0.93008 0.77312 0.88220 0.88819 0.89356 0.89904 0.85626 0.91649 0.90440 0.89858 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 12.91 55.43 0.72 -23.35 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.62 8.63 -34.44 -0.30 -12.92 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.03 0.62 1.38 -155.65 -0.21 0.41 16 10 C 0.18 4.11 5.50 -4.04 -0.02 4.08 16 11 N -0.72 -13.64 5.48 -65.23 -0.36 -14.00 16 12 C 0.70 12.70 7.90 -86.92 -0.69 12.01 16 13 O -0.60 -12.84 13.37 5.30 0.07 -12.77 16 14 N -0.75 -10.16 4.52 -58.67 -0.26 -10.42 16 15 C 0.20 2.43 2.27 -67.93 -0.15 2.28 16 16 H 0.09 1.27 7.33 -51.93 -0.38 0.89 16 17 C -0.12 -1.23 5.11 -26.73 -0.14 -1.36 16 18 C 0.07 0.78 6.93 37.16 0.26 1.03 16 19 O -0.58 -6.02 13.66 -35.23 -0.48 -6.51 16 20 C -0.17 -2.01 5.36 -90.62 -0.49 -2.50 16 21 C -0.17 -2.02 10.18 -26.69 -0.27 -2.29 16 22 C -0.18 -2.46 9.74 -26.69 -0.26 -2.72 16 23 C -0.21 -4.32 9.96 -26.69 -0.27 -4.58 16 24 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 25 H 0.26 6.91 8.32 -40.82 -0.34 6.58 16 26 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 27 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.40 6.86 8.38 -40.82 -0.34 6.51 16 29 H 0.39 4.48 8.62 -40.82 -0.35 4.13 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.57 7.75 -51.93 -0.40 0.16 16 34 H 0.38 2.42 9.12 45.56 0.42 2.84 16 35 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 36 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.13 2.19 5.02 -51.93 -0.26 1.92 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -29.95 356.59 -9.20 -39.15 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -6.36 Total: 15.54 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.88 Total: -8.31 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.09 Total: -47.77 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.41 Total: -19.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -9.20 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.759 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds