Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48502 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47175 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47364 * 60.00270 * 3 2 1 7 7 C 1.37870 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00457 * 173.55793 * 7 2 1 9 9 C 1.50706 * 119.99833 * 353.55860 * 7 2 1 10 10 C 1.53005 * 115.55070 * 85.41424 * 9 7 2 11 11 N 1.46490 * 109.47369 * 65.12140 * 10 9 7 12 12 C 1.34777 * 120.00145 * 178.21385 * 11 10 9 13 13 O 1.21579 * 119.99560 * 0.27735 * 12 11 10 14 14 N 1.34776 * 119.99795 * 180.27830 * 12 11 10 15 15 C 1.46506 * 119.99595 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47077 * 35.00204 * 15 14 12 17 17 C 1.53004 * 109.47056 * 154.99879 * 15 14 12 18 18 C 1.52999 * 109.47118 * 294.99876 * 17 15 14 19 19 O 1.42894 * 109.47153 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47087 * 274.99899 * 15 14 12 21 21 C 1.53009 * 117.49633 * 128.74766 * 20 15 14 22 22 C 1.52995 * 117.49966 * 60.08892 * 20 15 14 23 23 C 1.53004 * 117.49860 * 231.07695 * 9 7 2 24 24 C 1.53002 * 117.49956 * 299.74092 * 9 7 2 25 25 H 0.97003 * 120.00760 * 5.05229 * 1 2 3 26 26 H 1.09001 * 109.46721 * 305.12514 * 10 9 7 27 27 H 1.08995 * 109.47001 * 185.13021 * 10 9 7 28 28 H 0.97005 * 120.00365 * 358.49125 * 11 10 9 29 29 H 0.96996 * 120.00890 * 0.02562 * 14 12 11 30 30 H 1.08992 * 109.46948 * 55.00162 * 17 15 14 31 31 H 1.09002 * 109.47032 * 174.99961 * 17 15 14 32 32 H 1.09006 * 109.47348 * 299.99922 * 18 17 15 33 33 H 1.09002 * 109.47100 * 60.00126 * 18 17 15 34 34 H 0.96701 * 114.00286 * 179.97438 * 19 18 17 35 35 H 1.08998 * 115.54888 * 274.41355 * 20 15 14 36 36 H 1.08997 * 117.49692 * 359.97438 * 21 20 15 37 37 H 1.08995 * 117.49555 * 145.02071 * 21 20 15 38 38 H 1.09000 * 117.50111 * 214.97713 * 22 20 15 39 39 H 1.09000 * 117.49715 * 359.97438 * 22 20 15 40 40 H 1.08996 * 117.49859 * 215.00066 * 23 9 7 41 41 H 1.09005 * 117.49510 * 0.02953 * 23 9 7 42 42 H 1.09004 * 117.49650 * 359.97133 * 24 9 7 43 43 H 1.08997 * 117.49658 * 144.98050 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2582 -2.4951 0.1453 10 6 0.7024 -3.0860 -1.1520 11 7 1.8115 -3.4579 -2.0337 12 6 1.5606 -4.0354 -3.2254 13 8 0.4135 -4.2431 -3.5706 14 7 2.5813 -4.3826 -4.0341 15 6 2.3084 -5.0099 -5.3297 16 1 1.3944 -4.5912 -5.7508 17 6 3.4767 -4.7439 -6.2812 18 6 3.5688 -3.2440 -6.5690 19 8 4.6603 -2.9956 -7.4572 20 6 2.1383 -6.5185 -5.1402 21 6 0.8868 -7.1684 -5.7340 22 6 1.0127 -6.9922 -4.2186 23 6 1.7470 -3.4739 1.2149 24 6 0.4415 -2.7018 1.4226 25 1 -0.4851 0.8367 -0.0740 26 1 0.0755 -2.3457 -1.6491 27 1 0.1079 -3.9705 -0.9229 28 1 2.7267 -3.2922 -1.7583 29 1 3.4964 -4.2173 -3.7586 30 1 4.4046 -5.0832 -5.8209 31 1 3.3155 -5.2837 -7.2143 32 1 2.6408 -2.9048 -7.0294 33 1 3.7300 -2.7042 -5.6359 34 1 4.7783 -2.0630 -7.6841 35 1 3.0600 -7.1003 -5.1491 36 1 0.1846 -6.5211 -6.2592 37 1 0.9852 -8.1779 -6.1331 38 1 1.1937 -7.8860 -3.6214 39 1 0.3936 -6.2291 -3.7470 40 1 1.6725 -4.5387 0.9944 41 1 2.6081 -3.1765 1.8134 42 1 0.4445 -1.8968 2.1576 43 1 -0.4918 -3.2584 1.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797562995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = -62.183273 kcal Electronic energy + Delta-G solvation = -22724.567110 eV Core-core repulsion = 19384.203431 eV Total energy + Delta-G solvation = -3340.363679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21564 -39.09515 -38.21372 -37.61381 -35.40383 -34.78611 -33.95085 -32.13168 -28.18227 -27.33900 -26.35984 -23.21095 -22.96951 -22.60042 -21.98139 -21.34740 -21.18019 -19.27369 -18.34366 -17.93753 -17.38407 -16.77388 -16.56254 -16.12563 -16.03724 -15.67239 -15.40559 -15.02069 -14.91723 -14.40369 -14.35074 -13.63261 -13.44365 -13.13007 -12.92521 -12.86176 -12.82391 -12.53617 -12.32449 -12.28769 -12.04274 -12.00915 -11.46417 -11.30696 -11.11885 -10.97775 -10.90061 -10.83193 -10.45304 -10.09662 -10.01439 -9.54860 -8.08541 -6.21417 1.41132 1.45194 1.54128 1.84582 2.30825 2.43135 2.93026 3.17267 3.20001 3.41500 3.67795 3.91945 3.97813 4.06920 4.19288 4.21393 4.27147 4.38054 4.49677 4.58362 4.67436 4.69517 4.73954 4.76992 4.84569 4.98766 5.01071 5.04729 5.09293 5.15077 5.28460 5.31454 5.43677 5.61022 5.63391 5.67881 5.76612 5.82403 6.21556 6.38694 6.83924 6.85746 7.30488 7.47960 7.77791 8.99280 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.004772 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.377313 B = 5865.544965 C = 7171.308746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.005 3.995 10 C 0.203 3.797 11 N -0.717 5.717 12 C 0.699 3.301 13 O -0.635 6.635 14 N -0.728 5.728 15 C 0.199 3.801 16 H 0.065 0.935 17 C -0.110 4.110 18 C 0.074 3.926 19 O -0.589 6.589 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.201 4.201 23 C -0.175 4.175 24 C -0.160 4.160 25 H 0.258 0.742 26 H 0.025 0.975 27 H 0.030 0.970 28 H 0.405 0.595 29 H 0.407 0.593 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.396 0.604 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -10.147 -11.209 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.004 3.996 10 C 0.078 3.922 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.517 6.517 14 N -0.384 5.384 15 C 0.094 3.906 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.004 4.004 19 O -0.397 6.397 20 C -0.179 4.179 21 C -0.199 4.199 22 C -0.238 4.238 23 C -0.212 4.212 24 C -0.198 4.198 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.240 0.760 29 H 0.243 0.757 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.885 -10.825 -11.398 17.586 hybrid contribution 0.404 1.999 0.510 2.102 sum 8.289 -8.826 -10.888 16.283 Atomic orbital electron populations 1.70111 1.07305 1.27208 1.50029 1.25689 0.95406 1.02029 0.94462 0.85651 0.79537 0.80208 0.77078 1.18480 1.21440 1.21213 1.20667 0.93075 0.89487 1.50569 0.91819 1.19096 0.99642 0.94493 0.86365 1.20329 0.87014 0.95011 0.89868 1.44922 1.10803 1.64001 1.17271 1.16130 0.84975 0.78222 0.80725 1.90784 1.21792 1.63107 1.76065 1.45070 1.08074 1.66001 1.19274 1.20259 0.98399 0.90249 0.81718 0.91718 1.21650 0.97996 0.95318 0.99842 1.22148 0.88828 0.96750 0.92659 1.86372 1.52294 1.33182 1.67851 1.22717 0.94309 0.95319 1.05588 1.22969 0.99247 1.02309 0.95373 1.23172 1.03338 1.03270 0.94032 1.22993 0.97302 0.96220 1.04728 1.22427 0.93769 1.01398 1.02192 0.93283 0.95698 0.95145 0.76029 0.75708 0.89363 0.88597 0.93991 0.93610 0.75391 0.85799 0.89698 0.86825 0.88946 0.89450 0.89431 0.89569 0.91845 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.28 12.91 21.44 0.28 -51.01 16 2 C 0.02 1.30 5.39 84.65 0.46 1.75 16 3 Si 0.95 41.77 29.55 68.60 2.03 43.79 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.50 -25.16 8.63 25.60 0.22 -24.94 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.06 16 9 C 0.00 0.22 1.38 -52.92 -0.07 0.15 16 10 C 0.20 9.29 5.50 86.38 0.48 9.76 16 11 N -0.72 -27.08 5.48 -478.56 -2.62 -29.70 16 12 C 0.70 25.42 7.90 179.05 1.41 26.84 16 13 O -0.63 -28.03 13.37 -3.96 -0.05 -28.09 16 14 N -0.73 -18.93 4.52 -457.81 -2.07 -20.99 16 15 C 0.20 4.58 2.27 44.99 0.10 4.69 16 16 H 0.06 1.84 7.33 -2.39 -0.02 1.83 16 17 C -0.11 -1.95 5.11 30.60 0.16 -1.79 16 18 C 0.07 1.43 6.93 71.98 0.50 1.93 16 19 O -0.59 -10.91 13.66 -148.98 -2.03 -12.94 16 20 C -0.16 -3.44 5.36 -10.79 -0.06 -3.49 16 21 C -0.16 -3.47 10.18 30.62 0.31 -3.16 16 22 C -0.20 -5.40 9.74 30.62 0.30 -5.10 16 23 C -0.18 -6.89 9.96 30.62 0.30 -6.59 16 24 C -0.16 -7.25 9.42 30.62 0.29 -6.96 16 25 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 26 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 28 H 0.40 13.58 8.38 -92.70 -0.78 12.80 16 29 H 0.41 8.40 8.62 -92.71 -0.80 7.60 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 34 H 0.40 4.24 9.12 -74.06 -0.68 3.56 16 35 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 36 H 0.08 1.97 8.05 -2.39 -0.02 1.96 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 3.12 5.02 -2.39 -0.01 3.11 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 42 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 3.04 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -65.53 356.59 -1.30 -66.83 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -1.22 Total: 39.03 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 4.40 Total: -6.92 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -4.41 Total: -101.70 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -2.09 Total: -41.03 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -65.53 -1.30 -66.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.645 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds