Wall clock time and date at job start Tue Mar 31 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48498 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46997 * 299.99280 * 3 2 1 6 6 H 1.48498 * 109.47778 * 59.99360 * 3 2 1 7 7 C 1.37874 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99882 * 173.56105 * 7 2 1 9 9 C 1.50699 * 120.00379 * 353.55443 * 7 2 1 10 10 C 1.53004 * 115.54437 * 85.40412 * 9 7 2 11 11 N 1.46499 * 109.47295 * 65.14758 * 10 9 7 12 12 C 1.34777 * 120.00423 * 178.27452 * 11 10 9 13 13 O 1.21282 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00126 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.46988 * 179.97438 * 14 12 11 16 16 N 1.46900 * 109.47154 * 180.02562 * 15 14 12 17 17 C 1.47015 * 110.99974 * 293.63711 * 16 15 14 18 18 C 1.53101 * 109.25727 * 177.60908 * 17 16 15 19 19 O 1.43016 * 109.25792 * 56.84463 * 18 17 16 20 20 C 1.43013 * 113.74026 * 301.33135 * 19 18 17 21 21 C 1.47015 * 111.00203 * 170.00035 * 16 15 14 22 22 C 1.52998 * 117.50586 * 231.07362 * 9 7 2 23 23 C 1.52998 * 117.50054 * 299.74042 * 9 7 2 24 24 H 0.96997 * 119.99595 * 5.06291 * 1 2 3 25 25 H 1.09004 * 109.47303 * 305.14155 * 10 9 7 26 26 H 1.09003 * 109.47167 * 185.14218 * 10 9 7 27 27 H 0.97008 * 119.99921 * 358.26760 * 11 10 9 28 28 H 1.09003 * 109.47417 * 299.99739 * 14 12 11 29 29 H 1.09001 * 109.47048 * 60.00267 * 14 12 11 30 30 H 1.09003 * 109.46893 * 300.00138 * 15 14 12 31 31 H 1.09003 * 109.47444 * 60.00146 * 15 14 12 32 32 H 1.09006 * 109.50289 * 297.53761 * 17 16 15 33 33 H 1.08997 * 109.50729 * 57.67014 * 17 16 15 34 34 H 1.09000 * 109.50233 * 296.91073 * 18 17 16 35 35 H 1.09001 * 109.53608 * 176.80204 * 18 17 16 36 36 H 1.09002 * 109.50250 * 298.73845 * 20 19 18 37 37 H 1.09002 * 109.54147 * 178.63142 * 20 19 18 38 38 H 1.09009 * 109.50402 * 302.32676 * 21 16 15 39 39 H 1.09001 * 109.50836 * 62.40883 * 21 16 15 40 40 H 1.08995 * 117.50434 * 215.00542 * 22 9 7 41 41 H 1.09001 * 117.49220 * 0.02562 * 22 9 7 42 42 H 1.08999 * 117.49685 * 359.96678 * 23 9 7 43 43 H 1.09003 * 117.49609 * 144.97294 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0795 -1.1971 -0.1044 9 6 1.2582 -2.4950 0.1476 10 6 0.7021 -3.0869 -1.1491 11 7 1.8112 -3.4600 -2.0306 12 6 1.5601 -4.0374 -3.2222 13 8 0.4159 -4.2485 -3.5647 14 6 2.7009 -4.4207 -4.1291 15 6 2.1461 -5.0527 -5.4073 16 7 3.2582 -5.4269 -6.2912 17 6 3.9684 -4.2352 -6.7778 18 6 5.1525 -4.6718 -7.6445 19 8 4.6765 -5.4931 -8.7143 20 6 3.9805 -6.6631 -8.2761 21 6 2.7845 -6.2466 -7.4159 22 6 1.7469 -3.4729 1.2179 23 6 0.4416 -2.7005 1.4251 24 1 -0.4849 0.8368 -0.0741 25 1 0.0754 -2.3469 -1.6469 26 1 0.1075 -3.9710 -0.9193 27 1 2.7264 -3.2915 -1.7566 28 1 3.2773 -3.5313 -4.3838 29 1 3.3449 -5.1375 -3.6197 30 1 1.5700 -5.9422 -5.1523 31 1 1.5018 -4.3362 -5.9169 32 1 3.2888 -3.6237 -7.3715 33 1 4.3324 -3.6565 -5.9290 34 1 5.8586 -5.2382 -7.0373 35 1 5.6485 -3.7919 -8.0541 36 1 4.6526 -7.2872 -7.6873 37 1 3.6284 -7.2236 -9.1421 38 1 2.2845 -7.1362 -7.0327 39 1 2.0854 -5.6676 -8.0192 40 1 1.6725 -4.5379 0.9984 41 1 2.6082 -3.1751 1.8160 42 1 0.4447 -1.8950 2.1594 43 1 -0.4918 -3.2572 1.3416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797768640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:33 Heat of formation + Delta-G solvation = -60.251440 kcal Electronic energy + Delta-G solvation = -22224.644234 eV Core-core repulsion = 18884.364325 eV Total energy + Delta-G solvation = -3340.279908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.86555 -39.00573 -36.80190 -36.02134 -33.28984 -32.01197 -31.64052 -31.10787 -27.51336 -26.04030 -25.09938 -24.25254 -22.45611 -21.20990 -20.54951 -19.69706 -19.20992 -17.17132 -16.47419 -16.32255 -15.84352 -15.68348 -15.28502 -15.22250 -14.83499 -14.59147 -14.44428 -14.02223 -13.73735 -13.12499 -12.89258 -12.57664 -12.41919 -12.15021 -11.81362 -11.62308 -11.60110 -11.47047 -11.05425 -10.96751 -10.93435 -10.68258 -10.55238 -10.30088 -9.90866 -9.69152 -9.31825 -8.99612 -8.58751 -8.53809 -8.30661 -8.10253 -6.11526 -4.20384 3.19127 3.21962 3.31307 3.33085 3.40596 3.64266 4.05499 4.32212 4.63884 4.76370 4.77175 4.92109 5.03091 5.12195 5.16545 5.17755 5.24962 5.30656 5.38532 5.45308 5.56094 5.59404 5.71046 5.76501 5.92418 5.97005 6.01657 6.30856 6.44000 6.54166 6.66557 6.74891 6.77342 6.86259 6.89883 7.06481 7.26156 7.40284 7.45556 7.77911 8.27604 8.30544 8.80377 8.86653 9.46725 10.96331 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.003395 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.287541 B = 8244.775354 C = 8990.224729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.702 5.702 12 C 0.504 3.496 13 O -0.562 6.562 14 C -0.137 4.137 15 C 0.073 3.927 16 N -0.539 5.539 17 C 0.011 3.989 18 C 0.064 3.936 19 O -0.388 6.388 20 C 0.064 3.936 21 C 0.017 3.983 22 C -0.210 4.210 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.400 0.600 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -10.443 -11.890 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.040 3.960 11 N -0.351 5.351 12 C 0.289 3.711 13 O -0.442 6.442 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.265 5.265 17 C -0.117 4.117 18 C -0.013 4.013 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.111 4.111 22 C -0.248 4.248 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.234 0.766 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.952 -10.687 -11.967 17.906 hybrid contribution 0.110 1.570 0.104 1.577 sum 8.062 -9.117 -11.863 16.995 Atomic orbital electron populations 1.69988 1.05912 1.26851 1.48244 1.24997 0.94806 0.98992 0.94290 0.86574 0.80177 0.83806 0.77666 1.19684 1.21047 1.20921 1.20383 0.92865 0.88606 1.51987 0.92121 1.19039 0.98603 0.93946 0.85752 1.20987 0.87386 0.96859 0.90777 1.45988 1.11474 1.59845 1.17767 1.20440 0.90183 0.78131 0.82332 1.90657 1.23032 1.55915 1.74558 1.21600 0.97856 1.02458 0.95822 1.21809 0.91050 1.00620 0.91992 1.62213 1.27078 1.19461 1.17702 1.22884 0.96875 0.92559 0.99423 1.22678 0.94937 0.94950 0.88717 1.87973 1.74277 1.36186 1.32246 1.22659 0.92798 0.87523 0.98280 1.22769 0.97346 0.98617 0.92346 1.23024 0.98672 0.95658 1.07418 1.22495 0.92278 1.01087 1.02793 0.92876 0.91040 0.94536 0.76560 0.89222 0.88432 0.89811 0.93706 0.93760 0.89091 0.92190 0.88465 0.92243 0.88550 0.89476 0.93834 0.91643 0.90339 0.89820 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 12.91 55.43 0.72 -23.37 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 20.31 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -12.69 8.63 -34.44 -0.30 -12.99 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 10 C 0.16 3.66 5.50 -4.04 -0.02 3.64 16 11 N -0.70 -13.26 5.47 -60.29 -0.33 -13.59 16 12 C 0.50 9.05 7.83 -10.99 -0.09 8.96 16 13 O -0.56 -12.18 15.98 5.56 0.09 -12.09 16 14 C -0.14 -1.78 5.63 -27.88 -0.16 -1.94 16 15 C 0.07 0.94 4.25 -3.82 -0.02 0.92 16 16 N -0.54 -5.95 4.73 -234.30 -1.11 -7.05 16 17 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 18 C 0.06 0.59 7.01 37.21 0.26 0.85 16 19 O -0.39 -4.18 10.83 -35.23 -0.38 -4.56 16 20 C 0.06 0.56 7.01 37.20 0.26 0.83 16 21 C 0.02 0.17 5.64 -3.72 -0.02 0.15 16 22 C -0.21 -4.31 9.96 -26.69 -0.27 -4.57 16 23 C -0.15 -3.36 9.42 -26.69 -0.25 -3.61 16 24 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 25 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 26 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.40 6.84 8.37 -40.82 -0.34 6.50 16 28 H 0.09 1.06 6.52 -51.93 -0.34 0.72 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 31 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.85 6.38 -51.93 -0.33 0.52 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.76 8.09 -51.92 -0.42 0.34 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -29.90 351.23 -8.98 -38.88 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.31 Total: 6.65 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.93 Total: -5.43 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.72 Total: -44.01 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.29 Total: -16.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.90 -8.98 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797768640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.373 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds