Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47234 * 269.99838 * 3 2 1 5 5 H 1.48500 * 109.47049 * 29.99981 * 3 2 1 6 6 H 1.48500 * 109.46808 * 149.99925 * 3 2 1 7 7 C 1.37874 * 119.99321 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00568 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47420 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47136 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99795 * 180.02562 * 12 11 10 14 14 O 1.21347 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.49457 * 119.99667 * 179.97438 * 13 12 11 16 16 O 1.21348 * 119.99763 * 359.97438 * 15 13 12 17 17 N 1.34771 * 119.99493 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99622 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.52992 * 109.47482 * 179.97438 * 19 18 17 21 21 C 1.53778 * 113.61727 * 274.13766 * 20 19 18 22 22 C 1.53956 * 87.02468 * 220.04570 * 21 20 19 23 23 C 1.53784 * 113.61658 * 176.52792 * 20 19 18 24 24 H 0.97005 * 119.99178 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46665 * 59.99926 * 9 7 2 26 26 H 1.09002 * 109.47210 * 300.00184 * 9 7 2 27 27 H 1.09001 * 109.46885 * 60.00523 * 10 9 7 28 28 H 1.08992 * 109.47458 * 300.00503 * 10 9 7 29 29 H 1.09001 * 109.47109 * 60.00845 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00659 * 11 10 9 31 31 H 0.96995 * 120.00194 * 359.97438 * 12 11 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 17 15 13 33 33 H 1.09002 * 109.47068 * 299.99729 * 18 17 15 34 34 H 1.09001 * 109.47372 * 59.99816 * 18 17 15 35 35 H 1.09002 * 109.47153 * 300.00008 * 19 18 17 36 36 H 1.08998 * 109.47533 * 59.99637 * 19 18 17 37 37 H 1.09000 * 112.84915 * 45.33452 * 20 19 18 38 38 H 1.08996 * 113.61184 * 334.56845 * 21 20 19 39 39 H 1.09000 * 113.61578 * 105.46835 * 21 20 19 40 40 H 1.09002 * 113.53647 * 270.81670 * 22 21 20 41 41 H 1.08996 * 113.66740 * 139.92974 * 22 21 20 42 42 H 1.08998 * 113.61407 * 254.52625 * 23 20 19 43 43 H 1.08996 * 113.61156 * 25.35491 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4320 -6.1007 0.0018 13 6 1.9826 -7.3714 0.0019 14 8 0.7895 -7.5930 0.0020 15 6 2.9538 -8.5074 0.0020 16 8 4.1468 -8.2857 0.0014 17 7 2.5044 -9.7780 0.0026 18 6 3.4563 -10.8916 0.0032 19 6 2.6913 -12.2166 0.0045 20 6 3.6854 -13.3795 0.0045 21 6 4.1620 -13.7826 -1.4009 22 6 4.0623 -15.2443 -0.9280 23 6 3.0166 -14.7616 0.0911 24 1 -0.4849 0.8402 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8893 29 1 0.8531 -5.0451 -0.8887 30 1 0.8536 -5.0446 0.8912 31 1 3.3856 -5.9236 0.0014 32 1 1.5507 -9.9552 0.0034 33 1 4.0830 -10.8344 -0.8868 34 1 4.0830 -10.8334 0.8932 35 1 2.0649 -12.2736 0.8947 36 1 2.0643 -12.2750 -0.8852 37 1 4.4976 -13.2420 0.7183 38 1 3.4547 -13.5301 -2.1909 39 1 5.1799 -13.4637 -1.6249 40 1 4.9786 -15.6171 -0.4701 41 1 3.6584 -15.9212 -1.6808 42 1 3.1113 -15.2320 1.0698 43 1 1.9952 -14.7770 -0.2890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804719042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = -82.134773 kcal Electronic energy + Delta-G solvation = -20816.877715 eV Core-core repulsion = 17475.648874 eV Total energy + Delta-G solvation = -3341.228841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.61905 -39.44159 -38.45865 -35.94094 -35.22730 -33.33039 -31.37309 -31.24321 -27.38081 -26.23249 -25.87806 -24.09562 -22.57970 -22.01100 -20.78123 -20.20237 -19.73751 -18.34641 -16.92654 -16.36568 -16.30487 -15.98631 -15.68728 -15.28657 -15.01014 -14.74656 -14.44580 -14.38824 -13.73560 -13.49102 -13.07909 -12.89262 -12.69032 -12.31161 -11.90880 -11.88871 -11.79749 -11.69122 -11.59883 -11.04696 -10.91394 -10.76296 -10.67669 -10.61235 -10.60138 -9.90284 -9.77469 -9.46992 -9.37022 -9.13257 -8.97794 -8.37967 -6.02824 -4.05805 1.42993 2.35413 3.23693 3.31127 3.37475 3.40639 3.66069 4.05318 4.15966 4.27955 4.39817 4.43687 4.51191 4.66680 4.84074 4.96371 5.11423 5.28970 5.30310 5.33172 5.33877 5.46424 5.48518 5.59031 5.59545 5.66524 5.69208 5.83752 5.99881 6.05089 6.08070 6.27333 6.54089 6.69350 6.92432 6.95178 7.41062 7.61580 7.73175 7.73240 7.95549 8.05628 8.36837 9.00659 9.58555 11.08410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.064281 B = 0.001966 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.485060 B =14236.262406 C =14523.721208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.521 6.521 17 N -0.705 5.705 18 C 0.118 3.882 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.413 0.587 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.585 -29.406 -0.557 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.404 6.404 15 C 0.288 3.712 16 O -0.396 6.396 17 N -0.359 5.359 18 C -0.005 4.005 19 C -0.161 4.161 20 C -0.127 4.127 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.174 4.174 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.438 -29.263 -0.552 29.968 hybrid contribution 0.422 0.965 -0.002 1.053 sum 6.860 -28.298 -0.554 29.123 Atomic orbital electron populations 1.69972 1.06049 1.26693 1.50566 1.25029 0.94874 0.99325 0.95236 0.86565 0.79807 0.83352 0.78105 1.20655 1.21206 1.19875 1.21205 0.93066 0.90894 1.50960 0.92564 1.19036 0.93811 0.90791 0.97729 1.21927 0.99878 0.92955 1.01322 1.21847 0.91745 0.84728 1.02535 1.46075 1.12230 1.05008 1.70987 1.20026 0.88464 0.84543 0.79021 1.90755 1.16021 1.84728 1.48928 1.20345 0.88769 0.84456 0.77606 1.90760 1.16270 1.84806 1.47812 1.45785 1.11682 1.04916 1.73498 1.21480 0.91864 0.84259 1.02911 1.21813 0.98327 0.92768 1.03204 1.22481 0.98354 0.93600 0.98257 1.23048 1.01839 0.96240 0.96600 1.22842 0.99506 0.96723 0.99089 1.22939 0.98828 0.95930 0.99720 0.92934 0.96191 0.96170 0.92423 0.92418 0.91086 0.91085 0.75305 0.75096 0.90905 0.91007 0.90797 0.90846 0.88845 0.89960 0.91356 0.90231 0.91484 0.91457 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.46 5.55 -60.73 -0.34 -10.79 16 13 C 0.50 7.51 7.89 -11.58 -0.09 7.42 16 14 O -0.53 -8.95 16.48 5.50 0.09 -8.86 16 15 C 0.51 6.71 7.89 -11.58 -0.09 6.62 16 16 O -0.52 -7.90 16.48 5.50 0.09 -7.81 16 17 N -0.70 -7.02 5.55 -60.73 -0.34 -7.36 16 18 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 19 C -0.12 -0.68 5.15 -26.74 -0.14 -0.82 16 20 C -0.11 -0.56 3.64 -89.81 -0.33 -0.88 16 21 C -0.14 -0.73 7.65 -25.83 -0.20 -0.93 16 22 C -0.14 -0.69 8.09 -25.82 -0.21 -0.90 16 23 C -0.14 -0.66 7.65 -25.91 -0.20 -0.85 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.41 5.69 7.94 -40.82 -0.32 5.36 16 32 H 0.41 3.64 7.94 -40.82 -0.32 3.31 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -31.86 362.11 -8.66 -40.51 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.35 Total: 1.26 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.99 Total: -2.97 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.06 Total: -44.09 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.18 Total: -16.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.86 -8.66 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804719042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds