Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00053 * 2 1 4 4 H 1.48502 * 109.47464 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47130 * 300.00279 * 3 2 1 6 6 H 1.48504 * 109.47222 * 60.00047 * 3 2 1 7 7 C 1.37878 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47558 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47094 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46580 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46837 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00133 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99861 * 175.02140 * 15 13 12 17 17 C 1.50702 * 110.01723 * 303.55898 * 16 15 13 18 18 N 1.34773 * 120.00017 * 325.18316 * 17 16 15 19 19 O 1.21281 * 119.99674 * 145.18764 * 17 16 15 20 20 C 1.54271 * 110.03212 * 64.95365 * 16 15 13 21 21 C 1.54970 * 104.15615 * 95.75456 * 20 16 15 22 22 C 1.54886 * 102.78092 * 37.88842 * 21 20 16 23 23 C 1.53880 * 110.03165 * 182.16971 * 16 15 13 24 24 H 0.97003 * 120.00554 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46815 * 60.00068 * 9 7 2 26 26 H 1.09008 * 109.46833 * 300.00341 * 9 7 2 27 27 H 1.09004 * 109.46804 * 59.99935 * 10 9 7 28 28 H 1.09004 * 109.46545 * 300.00011 * 10 9 7 29 29 H 1.08994 * 109.47201 * 60.00360 * 11 10 9 30 30 H 1.08995 * 109.47257 * 299.99588 * 11 10 9 31 31 H 1.08994 * 109.47525 * 60.00357 * 12 11 10 32 32 H 1.08999 * 109.47504 * 299.99617 * 12 11 10 33 33 H 0.96994 * 119.99551 * 355.02039 * 15 13 12 34 34 H 0.97000 * 119.99539 * 174.94791 * 18 17 16 35 35 H 0.96995 * 120.00239 * 354.68456 * 18 17 16 36 36 H 1.08998 * 110.48286 * 214.39630 * 20 16 15 37 37 H 1.08988 * 110.48674 * 337.04077 * 20 16 15 38 38 H 1.09001 * 110.71905 * 279.56522 * 21 20 16 39 39 H 1.09003 * 110.91939 * 156.29678 * 21 20 16 40 40 H 1.09000 * 110.48411 * 203.40372 * 22 21 20 41 41 H 1.08991 * 110.48883 * 80.76024 * 22 21 20 42 42 H 1.09007 * 110.02794 * 359.95129 * 23 16 15 43 43 H 1.08993 * 110.03215 * 121.38136 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0031 14 8 0.5083 -7.4551 -0.0030 15 7 2.3950 -8.6224 -0.0033 16 6 1.6666 -9.8887 0.1056 17 6 0.8213 -9.8920 1.3532 18 7 1.2621 -9.2751 2.4674 19 8 -0.2556 -10.4499 1.3546 20 6 0.7756 -10.0943 -1.1370 21 6 1.6324 -10.9818 -2.0750 22 6 2.3340 -11.9467 -1.0873 23 6 2.6573 -11.0657 0.1370 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8906 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0452 0.8886 31 1 3.1012 -6.0928 0.8881 32 1 3.1012 -6.0918 -0.8918 33 1 3.3622 -8.6238 -0.0756 34 1 0.6882 -9.2136 3.2470 35 1 2.1546 -8.8959 2.4911 36 1 -0.1467 -10.6072 -0.8643 37 1 0.5556 -9.1380 -1.6111 38 1 2.3646 -10.3796 -2.6129 39 1 1.0016 -11.5337 -2.7719 40 1 3.2505 -12.3415 -1.5259 41 1 1.6637 -12.7589 -0.8065 42 1 3.6801 -10.6946 0.0704 43 1 2.5268 -11.6392 1.0546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808412595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -109.766923 kcal Electronic energy + Delta-G solvation = -22375.929347 eV Core-core repulsion = 19033.502287 eV Total energy + Delta-G solvation = -3342.427061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13479 -38.94527 -37.40483 -34.93638 -34.30765 -33.26624 -32.60510 -30.00716 -29.17332 -28.29279 -25.52939 -22.84189 -22.65179 -21.38970 -20.27625 -19.97433 -19.52117 -17.99301 -17.27247 -16.80904 -16.19370 -15.85466 -15.73414 -15.45635 -14.60079 -14.45635 -14.35141 -13.93123 -13.78098 -13.47454 -12.75300 -12.53302 -12.24266 -11.99003 -11.71042 -11.66447 -11.59205 -11.57053 -11.28567 -11.01066 -10.92247 -10.56888 -10.49492 -10.43916 -10.40406 -9.82265 -9.81234 -9.63779 -9.23864 -9.21365 -8.98355 -8.31820 -5.96160 -3.98868 2.36944 2.60600 2.94269 3.32270 3.32846 3.39550 3.43174 4.10718 4.17305 4.47896 4.49855 4.72516 4.87544 5.03852 5.08539 5.11007 5.26202 5.29207 5.32559 5.35053 5.39298 5.54508 5.64193 5.74312 5.80562 5.94080 6.10008 6.12102 6.24012 6.27081 6.51154 6.61950 6.80936 6.99198 7.12224 7.17997 7.30528 7.73184 7.88617 8.05033 8.08189 8.16434 8.46678 9.09144 9.64964 11.15173 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.002804 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.062056 B = 9981.714659 C =10195.566275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.508 3.492 14 O -0.517 6.517 15 N -0.732 5.732 16 C 0.156 3.844 17 C 0.530 3.470 18 N -0.850 5.850 19 O -0.535 6.535 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.118 4.118 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.402 0.598 35 H 0.399 0.601 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.045 -24.946 0.448 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.295 3.705 14 O -0.390 6.390 15 N -0.389 5.389 16 C 0.066 3.934 17 C 0.313 3.687 18 N -0.412 5.412 19 O -0.410 6.410 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.238 0.762 34 H 0.233 0.767 35 H 0.227 0.773 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.315 -25.223 0.289 26.560 hybrid contribution 1.173 1.302 0.401 1.798 sum 9.488 -23.921 0.689 25.743 Atomic orbital electron populations 1.69982 1.06056 1.26423 1.50953 1.25046 0.94835 0.99252 0.95462 0.86561 0.80064 0.83942 0.77565 1.19779 1.21041 1.21050 1.21315 0.92995 0.91187 1.50352 0.92714 1.19098 0.94055 0.91291 0.97313 1.21645 0.99060 0.93991 1.00035 1.21454 0.96995 0.92690 1.03004 1.21809 1.00092 0.91793 1.04043 1.21244 0.88718 0.85508 0.75016 1.90771 1.14014 1.87370 1.46865 1.46417 1.10402 1.04678 1.77435 1.21148 0.92903 0.85219 0.94156 1.20508 0.86238 0.77177 0.84732 1.43737 1.20419 1.60788 1.16306 1.90719 1.21916 1.44299 1.84090 1.22701 0.98543 1.01587 0.93017 1.22534 0.98881 0.97297 0.97421 1.22355 1.00865 0.97953 0.94805 1.22384 0.98036 0.94849 1.00349 0.93077 0.96593 0.96632 0.93504 0.93477 0.91780 0.91835 0.89083 0.89054 0.76181 0.76737 0.77291 0.88966 0.89902 0.91319 0.90937 0.90940 0.90965 0.89939 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 13 C 0.51 6.31 6.79 -10.98 -0.07 6.23 16 14 O -0.52 -8.92 13.75 5.56 0.08 -8.84 16 15 N -0.73 -6.13 4.49 -47.63 -0.21 -6.35 16 16 C 0.16 1.50 0.86 -131.85 -0.11 1.39 16 17 C 0.53 6.62 5.37 -10.99 -0.06 6.56 16 18 N -0.85 -7.96 8.48 31.22 0.26 -7.69 16 19 O -0.54 -8.88 16.41 5.56 0.09 -8.79 16 20 C -0.12 -1.35 5.55 -25.03 -0.14 -1.49 16 21 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 22 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 23 C -0.12 -0.75 6.24 -25.61 -0.16 -0.91 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.40 1.96 8.07 -40.82 -0.33 1.63 16 34 H 0.40 3.57 8.93 -40.82 -0.36 3.21 16 35 H 0.40 2.69 8.31 -40.82 -0.34 2.35 16 36 H 0.09 1.23 6.80 -51.93 -0.35 0.88 16 37 H 0.08 1.12 6.62 -51.94 -0.34 0.77 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.32 7.45 -51.93 -0.39 -0.07 16 43 H 0.08 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -36.57 348.24 -7.80 -44.37 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.12 Total: 1.70 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.85 Total: -9.66 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.79 Total: -40.81 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.57 -7.80 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808412595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.395 kcal (2) G-P(sol) polarization free energy of solvation -36.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds