Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00088 * 2 1 4 4 H 1.08999 * 109.46725 * 330.00251 * 3 2 1 5 5 C 1.53005 * 109.47053 * 89.99728 * 3 2 1 6 6 C 1.52994 * 109.46997 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47586 * 300.00296 * 6 5 3 8 8 C 1.52996 * 109.47115 * 59.99865 * 7 6 5 9 9 H 1.09004 * 109.47425 * 60.00296 * 8 7 6 10 10 C 1.50700 * 109.47407 * 180.02562 * 8 7 6 11 11 O 1.20821 * 119.99994 * 84.84695 * 10 8 7 12 12 O 1.34233 * 119.99737 * 264.85516 * 10 8 7 13 13 C 1.45196 * 116.99817 * 184.43517 * 12 10 8 14 14 C 1.52998 * 109.47300 * 178.71264 * 13 12 10 15 15 C 1.50699 * 115.54933 * 306.35197 * 14 13 12 16 16 H 1.08003 * 120.00454 * 144.74956 * 15 14 13 17 17 C 1.37882 * 119.99893 * 324.74272 * 15 14 13 18 18 N 1.31512 * 120.00159 * 347.52039 * 17 15 14 19 19 Si 1.86804 * 120.00017 * 167.51995 * 17 15 14 20 20 H 1.48504 * 109.46943 * 89.99879 * 19 17 15 21 21 H 1.48491 * 109.46896 * 210.00125 * 19 17 15 22 22 H 1.48497 * 109.47016 * 330.00488 * 19 17 15 23 23 C 1.52997 * 117.50242 * 160.67504 * 14 13 12 24 24 C 1.53002 * 117.49741 * 92.01450 * 14 13 12 25 25 C 1.52992 * 109.47107 * 209.99875 * 3 2 1 26 26 H 1.09005 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47686 * 300.00133 * 1 2 3 28 28 H 1.08998 * 109.47169 * 60.00232 * 1 2 3 29 29 H 1.09002 * 109.46837 * 60.00136 * 5 3 2 30 30 H 1.08994 * 109.47004 * 300.00419 * 5 3 2 31 31 H 1.09006 * 109.46813 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47069 * 60.00458 * 6 5 3 33 33 H 1.09002 * 109.47049 * 300.00174 * 7 6 5 34 34 H 1.09002 * 109.47232 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47359 * 298.71243 * 13 12 10 36 36 H 1.08998 * 109.47250 * 58.71487 * 13 12 10 37 37 H 0.96995 * 120.00251 * 185.04320 * 18 17 15 38 38 H 1.08999 * 117.49859 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49898 * 145.02598 * 23 14 13 40 40 H 1.09003 * 117.50008 * 214.98099 * 24 14 13 41 41 H 1.08995 * 117.50167 * 359.97438 * 24 14 13 42 42 H 1.08994 * 109.47604 * 59.99935 * 25 3 2 43 43 H 1.09002 * 109.47263 * 300.00158 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 2.8405 3.1688 1.4425 7 6 4.1892 3.1261 0.7215 8 6 3.9818 2.6602 -0.7210 9 1 3.3169 3.3543 -1.2350 10 6 5.3104 2.6175 -1.4311 11 8 6.0148 1.6404 -1.3364 12 8 5.7111 3.6650 -2.1686 13 6 6.9543 3.5164 -2.9038 14 6 7.2287 4.7908 -3.7047 15 6 6.1123 5.2420 -4.6109 16 1 5.9286 6.2961 -4.7579 17 6 5.3254 4.3091 -5.2524 18 7 5.6902 3.0458 -5.2760 19 14 3.7412 4.8395 -6.0882 20 1 4.0245 5.2053 -7.4993 21 1 2.7647 3.7214 -6.0530 22 1 3.1753 6.0137 -5.3766 23 6 8.6636 5.0333 -4.1769 24 6 8.0796 5.8741 -3.0388 25 6 3.3588 1.2632 -0.7212 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.8828 1.0774 1.9564 30 1 1.2568 1.8014 1.9563 31 1 2.9886 3.5005 2.4703 32 1 2.1756 3.8630 0.9286 33 1 4.8541 2.4319 1.2354 34 1 4.6332 4.1216 0.7219 35 1 7.7720 3.3440 -2.2040 36 1 6.8744 2.6693 -3.5851 37 1 5.1764 2.4021 -5.7884 38 1 9.4121 4.2847 -3.9173 39 1 8.8002 5.5196 -5.1428 40 1 7.8322 6.9131 -3.2566 41 1 8.4435 5.6791 -2.0301 42 1 3.2112 0.9313 -1.7488 43 1 4.0241 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815964630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = -126.953534 kcal Electronic energy + Delta-G solvation = -23170.448554 eV Core-core repulsion = 19794.983475 eV Total energy + Delta-G solvation = -3375.465079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07947 -38.76183 -36.90395 -36.14097 -34.95271 -32.16674 -31.14383 -30.15026 -26.69516 -26.55265 -25.39632 -23.55557 -22.43656 -21.25405 -20.51253 -19.43437 -19.16886 -17.13455 -16.71462 -16.25474 -15.73940 -15.36704 -15.17372 -14.82949 -14.58771 -14.51468 -13.92670 -13.72560 -13.33986 -13.07776 -12.64211 -12.40236 -11.99637 -11.88063 -11.78875 -11.61645 -11.25314 -11.11470 -10.98035 -10.82085 -10.73565 -10.55454 -10.51797 -10.50000 -10.33419 -9.88953 -9.63133 -9.44948 -9.27382 -9.11845 -8.76497 -8.11296 -6.06320 -4.09115 2.93843 3.25132 3.33106 3.37535 3.40869 3.81144 4.35319 4.64594 4.70730 4.87886 4.96820 5.00831 5.10253 5.21202 5.25544 5.27624 5.36494 5.42299 5.49539 5.51436 5.55765 5.72230 5.86050 5.90745 5.98595 6.04544 6.10885 6.11972 6.21751 6.28811 6.37590 6.47642 6.62779 6.64764 6.82266 6.97918 7.13136 7.25760 7.40142 7.59018 7.88748 8.33951 8.68105 8.86137 9.50163 10.95938 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.005182 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.614136 B = 5402.150508 C = 6277.823680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.092 3.908 4 H 0.063 0.937 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.077 4.077 9 H 0.101 0.899 10 C 0.462 3.538 11 O -0.525 6.525 12 O -0.325 6.325 13 C 0.115 3.885 14 C 0.049 3.951 15 C -0.483 4.483 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.882 5.882 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.193 4.193 24 C -0.209 4.209 25 C -0.103 4.103 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.111 0.889 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -1.911 11.891 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.179 4.179 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.096 4.096 9 H 0.119 0.881 10 C 0.305 3.695 11 O -0.416 6.416 12 O -0.239 6.239 13 C 0.042 3.958 14 C 0.048 3.952 15 C -0.520 4.520 16 H 0.080 0.920 17 C -0.128 4.128 18 N -0.519 5.519 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.231 4.231 24 C -0.247 4.247 25 C -0.140 4.140 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.360 -2.528 11.870 14.737 hybrid contribution -0.823 0.387 -0.602 1.090 sum -9.183 -2.142 11.268 14.693 Atomic orbital electron populations 1.22773 0.81383 1.02550 0.99869 1.87920 1.19364 1.27911 1.95051 1.22110 0.94734 0.84341 0.95400 0.91887 1.22060 1.01292 0.97425 0.97111 1.21469 0.96299 0.96497 1.00796 1.21524 0.98072 1.02421 0.92858 1.20839 0.93129 0.99053 0.96599 0.88052 1.23226 0.87779 0.81248 0.77275 1.90575 1.55728 1.33956 1.61296 1.86482 1.42648 1.39484 1.55303 1.22779 0.79481 1.01799 0.91763 1.18878 0.89983 0.90774 0.95530 1.20403 1.12435 0.92782 1.26401 0.91976 1.24931 0.97459 0.94675 0.95704 1.69806 1.39447 1.02381 1.40290 0.86575 0.83499 0.78446 0.79488 1.20668 1.21036 1.19582 1.22964 0.99512 1.02946 0.97691 1.22961 1.08816 0.97417 0.95476 1.21430 0.95016 0.95629 1.01967 0.89799 0.94220 0.94009 0.90864 0.91864 0.91085 0.91424 0.90976 0.90552 0.95555 0.87110 0.92685 0.91497 0.89793 0.90325 0.91327 0.90632 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.38 -5.05 10.35 -35.23 -0.36 -5.41 16 3 C 0.09 1.14 2.61 -26.73 -0.07 1.07 16 4 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 5 C -0.14 -1.48 5.54 -26.73 -0.15 -1.63 16 6 C -0.11 -1.14 5.92 -26.74 -0.16 -1.30 16 7 C -0.11 -1.44 5.19 -26.73 -0.14 -1.57 16 8 C -0.08 -1.23 2.62 -91.80 -0.24 -1.47 16 9 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 10 C 0.46 9.76 6.95 36.01 0.25 10.01 16 11 O -0.52 -12.23 16.03 -18.75 -0.30 -12.53 16 12 O -0.32 -7.75 9.86 -39.26 -0.39 -8.14 16 13 C 0.11 2.87 4.55 37.16 0.17 3.03 16 14 C 0.05 1.22 2.11 -155.66 -0.33 0.89 16 15 C -0.48 -13.08 8.76 -34.44 -0.30 -13.39 16 16 H 0.06 1.67 7.85 -52.48 -0.41 1.26 16 17 C 0.08 2.03 5.16 -17.82 -0.09 1.94 16 18 N -0.88 -24.59 10.85 55.43 0.60 -23.98 16 19 Si 0.89 20.82 29.56 -169.99 -5.02 15.80 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.19 -4.35 9.96 -26.69 -0.27 -4.62 16 24 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 25 C -0.10 -1.57 4.51 -26.76 -0.12 -1.69 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 28 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.11 3.06 6.07 -51.93 -0.32 2.75 16 37 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.38 7.85 -51.93 -0.41 0.97 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -30.08 350.06 -8.22 -38.30 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.40 Total: 2.84 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.62 Total: -12.15 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.60 Total: -23.98 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.05 Total: -26.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.08 -8.22 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.654 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds