Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99648 * 2 1 4 4 H 1.09004 * 109.47648 * 29.99921 * 3 2 1 5 5 C 1.52998 * 109.47368 * 269.99737 * 3 2 1 6 6 C 1.53001 * 109.47139 * 300.00309 * 5 3 2 7 7 C 1.52994 * 109.46871 * 299.99789 * 6 5 3 8 8 C 1.53003 * 109.47371 * 60.00243 * 7 6 5 9 9 H 1.09003 * 109.47127 * 59.99561 * 8 7 6 10 10 C 1.50699 * 109.47246 * 180.02562 * 8 7 6 11 11 O 1.20823 * 120.00302 * 96.78780 * 10 8 7 12 12 O 1.34232 * 119.99665 * 276.78604 * 10 8 7 13 13 C 1.45205 * 116.99770 * 184.18627 * 12 10 8 14 14 C 1.53000 * 109.46824 * 182.61860 * 13 12 10 15 15 C 1.50701 * 115.55159 * 306.20703 * 14 13 12 16 16 H 1.07998 * 119.99673 * 144.65296 * 15 14 13 17 17 C 1.37874 * 119.99964 * 324.65507 * 15 14 13 18 18 N 1.31515 * 120.00209 * 339.59239 * 17 15 14 19 19 Si 1.86800 * 120.00071 * 159.60049 * 17 15 14 20 20 H 1.48499 * 109.47085 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47597 * 119.99543 * 19 17 15 22 22 H 1.48497 * 109.47022 * 239.99747 * 19 17 15 23 23 C 1.52999 * 117.49420 * 160.53849 * 14 13 12 24 24 C 1.53001 * 117.49794 * 91.88056 * 14 13 12 25 25 C 1.53001 * 109.46924 * 299.99724 * 8 7 6 26 26 H 1.09003 * 109.47506 * 299.99783 * 1 2 3 27 27 H 1.09003 * 109.47551 * 60.00195 * 1 2 3 28 28 H 1.09002 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47531 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47122 * 60.00320 * 5 3 2 31 31 H 1.09003 * 109.47086 * 59.99896 * 6 5 3 32 32 H 1.09000 * 109.47235 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.46719 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47415 * 299.99528 * 7 6 5 35 35 H 1.08995 * 109.47409 * 302.62299 * 13 12 10 36 36 H 1.08996 * 109.46654 * 62.62145 * 13 12 10 37 37 H 0.96993 * 120.00076 * 185.04914 * 18 17 15 38 38 H 1.08997 * 117.50261 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49472 * 145.02563 * 23 14 13 40 40 H 1.09001 * 117.49798 * 214.97470 * 24 14 13 41 41 H 1.09004 * 117.49878 * 359.97438 * 24 14 13 42 42 H 1.09003 * 109.47293 * 300.00374 * 25 8 7 43 43 H 1.08995 * 109.47536 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1515 0.7974 -2.1637 7 6 4.5001 0.7553 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8493 -0.7065 0.0001 10 6 5.6210 0.2484 0.7107 11 8 5.9671 1.1795 1.3986 12 8 6.4196 -0.8225 0.5795 13 6 7.6405 -0.8345 1.3654 14 6 8.4461 -2.0930 1.0368 15 6 7.7016 -3.3959 1.1748 16 1 7.9037 -4.2082 0.4924 17 6 6.7624 -3.5509 2.1722 18 7 6.7857 -2.7637 3.2255 19 14 5.4568 -4.8791 2.0277 20 1 5.6469 -5.6237 0.7570 21 1 5.5751 -5.8163 3.1735 22 1 4.1104 -4.2528 2.0373 23 6 9.9355 -2.0898 1.3871 24 6 9.4926 -1.9916 -0.0748 25 6 3.3588 1.2633 0.7213 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.6605 2.7674 -1.4425 30 1 1.2568 1.8015 -1.9563 31 1 2.7082 -0.1984 -2.1637 32 1 3.2990 1.1291 -3.1915 33 1 5.1652 0.0610 -1.9560 34 1 4.9434 1.7510 -1.4424 35 1 8.2337 0.0488 1.1288 36 1 7.3898 -0.8303 2.4261 37 1 6.1722 -2.9188 3.9606 38 1 10.3412 -1.1914 1.8522 39 1 10.3768 -3.0303 1.7171 40 1 9.6428 -2.8675 -0.7060 41 1 9.6068 -1.0285 -0.5723 42 1 3.8021 2.2591 0.7213 43 1 3.2106 0.9312 1.7488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815964633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -124.732795 kcal Electronic energy + Delta-G solvation = -23389.176206 eV Core-core repulsion = 20013.807425 eV Total energy + Delta-G solvation = -3375.368781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10898 -38.82312 -36.79742 -35.82266 -34.94905 -32.12868 -31.06623 -30.26148 -26.71657 -26.56685 -25.33865 -23.54768 -22.54105 -21.21306 -20.32967 -19.32014 -19.14001 -17.00974 -16.68501 -16.16842 -15.80647 -15.34594 -15.31635 -14.77394 -14.62745 -14.50738 -13.77931 -13.61766 -13.03043 -12.84522 -12.66575 -12.40341 -11.99290 -11.98154 -11.83473 -11.60256 -11.36607 -11.13217 -10.92142 -10.86270 -10.76371 -10.44704 -10.40664 -10.30101 -10.21267 -9.81483 -9.56381 -9.48389 -9.24246 -9.15384 -8.68454 -8.02765 -6.07516 -4.01849 2.98564 3.30644 3.40798 3.44922 3.57884 3.72796 4.41378 4.65450 4.70361 4.87254 5.00361 5.11069 5.17112 5.22078 5.22525 5.37610 5.42130 5.47878 5.54821 5.56520 5.62673 5.78395 5.84728 5.96445 6.04350 6.06350 6.19322 6.20225 6.24648 6.31421 6.45994 6.48483 6.63896 6.67856 6.85302 7.00668 7.16032 7.29616 7.37870 7.58174 7.91654 8.39087 8.68921 8.90503 9.54823 10.97733 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.005657 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.762188 B = 4948.577514 C = 5858.252875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.090 3.910 4 H 0.063 0.937 5 C -0.142 4.142 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.076 4.076 9 H 0.110 0.890 10 C 0.459 3.541 11 O -0.531 6.531 12 O -0.325 6.325 13 C 0.114 3.886 14 C 0.050 3.950 15 C -0.489 4.489 16 H 0.063 0.937 17 C 0.080 3.920 18 N -0.876 5.876 19 Si 0.887 3.113 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.279 1.279 23 C -0.192 4.192 24 C -0.209 4.209 25 C -0.100 4.100 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.103 0.897 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 8.553 -7.990 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.032 3.968 4 H 0.081 0.919 5 C -0.179 4.179 6 C -0.148 4.148 7 C -0.146 4.146 8 C -0.095 4.095 9 H 0.128 0.872 10 C 0.303 3.697 11 O -0.422 6.422 12 O -0.239 6.239 13 C 0.041 3.959 14 C 0.049 3.951 15 C -0.525 4.525 16 H 0.082 0.918 17 C -0.124 4.124 18 N -0.512 5.512 19 Si 0.715 3.285 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.205 1.205 23 C -0.230 4.230 24 C -0.246 4.246 25 C -0.137 4.137 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.833 8.703 -7.638 15.857 hybrid contribution -0.731 -0.386 0.178 0.846 sum -11.564 8.317 -7.460 16.079 Atomic orbital electron populations 1.22765 0.81655 1.02646 0.99533 1.87998 1.19073 1.27554 1.94953 1.22145 0.94498 0.84756 0.95354 0.91896 1.22051 1.00060 0.99696 0.96118 1.21402 0.94701 1.00495 0.98192 1.21477 0.98059 1.01882 0.93156 1.20873 0.90353 1.02972 0.95310 0.87222 1.23514 0.86545 0.80629 0.79049 1.90557 1.74659 1.37831 1.39182 1.86521 1.33602 1.41190 1.62637 1.22698 0.80937 0.95308 0.96949 1.18860 0.86153 0.94168 0.95905 1.20364 1.19982 0.97078 1.15095 0.91844 1.24903 0.96950 0.96025 0.94556 1.69921 1.36931 1.38873 1.05464 0.86613 0.82367 0.81400 0.78147 1.19493 1.21272 1.20492 1.22962 1.02430 1.00621 0.97034 1.22956 1.09884 1.00180 0.91591 1.21540 0.92581 1.00316 0.99311 0.94263 0.94341 0.89767 0.90950 0.91920 0.90783 0.91796 0.90499 0.91645 0.95185 0.87881 0.92762 0.91589 0.89780 0.90309 0.91383 0.89494 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.38 -4.97 9.00 -35.23 -0.32 -5.28 16 3 C 0.09 1.06 2.92 -26.73 -0.08 0.98 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.14 -1.43 5.63 -26.73 -0.15 -1.58 16 6 C -0.11 -1.24 5.78 -26.73 -0.15 -1.40 16 7 C -0.11 -1.49 5.19 -26.73 -0.14 -1.63 16 8 C -0.08 -1.27 2.48 -91.77 -0.23 -1.50 16 9 H 0.11 1.96 7.68 -51.93 -0.40 1.57 16 10 C 0.46 9.85 7.08 36.01 0.26 10.10 16 11 O -0.53 -12.28 15.77 -18.75 -0.30 -12.58 16 12 O -0.33 -7.91 9.88 -39.26 -0.39 -8.30 16 13 C 0.11 2.89 4.70 37.16 0.17 3.06 16 14 C 0.05 1.27 2.08 -155.66 -0.32 0.94 16 15 C -0.49 -13.51 8.71 -34.44 -0.30 -13.81 16 16 H 0.06 1.75 7.90 -52.49 -0.41 1.34 16 17 C 0.08 2.20 5.04 -17.82 -0.09 2.11 16 18 N -0.88 -24.87 11.26 55.43 0.62 -24.25 16 19 Si 0.89 21.38 29.59 -169.99 -5.03 16.35 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.19 -4.42 9.96 -26.69 -0.27 -4.68 16 24 C -0.21 -4.62 9.92 -26.69 -0.26 -4.89 16 25 C -0.10 -1.45 4.45 -26.73 -0.12 -1.57 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 31 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.72 7.98 -51.93 -0.41 0.30 16 36 H 0.10 2.87 6.26 -51.93 -0.33 2.55 16 37 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -30.57 348.30 -8.11 -38.68 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.37 Total: 2.60 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.59 Total: -12.48 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.62 Total: -24.25 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.00 Total: -26.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.57 -8.11 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.049 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds