Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47218 * 274.99434 * 3 2 1 5 5 H 1.48501 * 109.46831 * 34.99495 * 3 2 1 6 6 H 1.48497 * 109.47349 * 154.99618 * 3 2 1 7 7 C 1.37873 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00436 * 175.14114 * 7 2 1 9 9 C 1.50704 * 120.00037 * 355.14336 * 7 2 1 10 10 C 1.53043 * 109.45983 * 185.41945 * 9 7 2 11 11 C 1.53193 * 109.30900 * 178.62583 * 10 9 7 12 12 N 1.46926 * 108.77837 * 54.63351 * 11 10 9 13 13 C 1.34769 * 120.63392 * 126.36589 * 12 11 10 14 14 O 1.21588 * 120.00340 * 185.27700 * 13 12 11 15 15 N 1.34779 * 120.00098 * 5.27615 * 13 12 11 16 16 O 1.41594 * 120.00319 * 175.02395 * 15 13 12 17 17 C 1.42899 * 114.00214 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47588 * 180.02562 * 17 16 15 19 19 C 1.53782 * 113.60815 * 274.13567 * 18 17 16 20 20 C 1.53956 * 87.01970 * 220.04127 * 19 18 17 21 21 C 1.53778 * 113.61726 * 176.52919 * 18 17 16 22 22 C 1.46927 * 118.73413 * 306.63997 * 12 11 10 23 23 C 1.52757 * 109.00860 * 53.31296 * 22 12 11 24 24 H 0.96998 * 119.99948 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.45690 * 305.38522 * 9 7 2 26 26 H 1.08994 * 109.50242 * 58.67363 * 10 9 7 27 27 H 1.08994 * 109.52295 * 298.59065 * 10 9 7 28 28 H 1.08997 * 109.58584 * 294.84191 * 11 10 9 29 29 H 1.08998 * 109.70179 * 174.49060 * 11 10 9 30 30 H 0.97003 * 119.99657 * 355.03394 * 15 13 12 31 31 H 1.09007 * 109.47330 * 299.99990 * 17 16 15 32 32 H 1.08999 * 109.47459 * 60.00352 * 17 16 15 33 33 H 1.09002 * 112.84954 * 45.32677 * 18 17 16 34 34 H 1.08994 * 113.61980 * 334.56365 * 19 18 17 35 35 H 1.09009 * 113.61374 * 105.46565 * 19 18 17 36 36 H 1.08995 * 113.54193 * 270.81526 * 20 19 18 37 37 H 1.09000 * 113.66401 * 139.93056 * 20 19 18 38 38 H 1.08996 * 113.61032 * 254.52405 * 21 18 17 39 39 H 1.08997 * 113.61382 * 25.34612 * 21 18 17 40 40 H 1.09007 * 109.58265 * 173.14462 * 22 12 11 41 41 H 1.08997 * 109.58872 * 293.56970 * 22 12 11 42 42 H 1.09007 * 109.56697 * 185.54789 * 23 22 12 43 43 H 1.09004 * 109.36193 * 65.49726 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4121 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0787 9 6 1.2551 -2.4968 0.1116 10 6 2.2534 -3.6512 0.2245 11 6 1.4881 -4.9701 0.3717 12 7 0.5436 -5.0963 -0.7466 13 6 0.5441 -6.1964 -1.5252 14 8 -0.1749 -6.2486 -2.5043 15 7 1.3416 -7.2387 -1.2185 16 8 1.2661 -8.4342 -1.9734 17 6 2.1669 -9.4545 -1.5380 18 6 1.9998 -10.6931 -2.4206 19 6 0.8790 -11.6362 -1.9524 20 6 1.8199 -12.8012 -2.3098 21 6 2.9868 -11.8244 -2.0878 22 6 -0.3974 -3.9976 -1.0038 23 6 0.3852 -2.6920 -1.1323 24 1 -0.4850 0.8400 -0.0004 25 1 0.6215 -2.4767 0.9983 26 1 2.8880 -3.4995 1.0975 27 1 2.8714 -3.6874 -0.6726 28 1 0.9408 -4.9717 1.3143 29 1 2.1884 -5.8052 0.3545 30 1 1.9673 -7.1698 -0.4804 31 1 3.1917 -9.0908 -1.6133 32 1 1.9487 -9.7140 -0.5021 33 1 1.9530 -10.4528 -3.4828 34 1 0.6619 -11.5614 -0.8870 35 1 -0.0167 -11.5913 -2.5721 36 1 1.7229 -13.1382 -3.3418 37 1 1.7938 -13.6207 -1.5916 38 1 3.7902 -11.9312 -2.8165 39 1 3.3481 -11.8002 -1.0597 40 1 -0.9392 -4.1898 -1.9299 41 1 -1.1017 -3.9183 -0.1757 42 1 -0.3098 -1.8574 -1.2249 43 1 1.0204 -2.7370 -2.0170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824081390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = -5.810630 kcal Electronic energy + Delta-G solvation = -22305.286313 eV Core-core repulsion = 18967.367136 eV Total energy + Delta-G solvation = -3337.919177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87911 -39.30143 -37.29570 -36.34495 -33.63558 -32.20155 -30.92936 -29.94779 -28.26153 -26.07423 -25.93412 -23.15916 -23.11602 -22.27710 -20.52294 -19.73562 -19.00511 -18.29365 -17.15552 -16.38461 -16.19578 -15.59126 -15.21946 -15.00773 -14.60075 -14.48647 -13.79704 -13.54673 -13.09871 -12.93938 -12.81945 -12.68674 -12.50036 -12.25756 -12.08519 -11.84593 -11.21772 -11.14577 -10.98432 -10.94942 -10.74112 -10.67047 -10.49229 -10.44550 -10.08047 -9.76826 -9.55741 -9.19986 -8.93217 -8.77670 -8.38033 -7.94116 -6.02700 -4.08331 1.80747 3.28820 3.36471 3.39083 3.55064 3.82815 4.13816 4.22882 4.34294 4.41515 4.47802 4.73062 4.94785 5.03102 5.16712 5.27607 5.28900 5.33842 5.38060 5.50567 5.54833 5.70779 5.70970 5.76827 5.85602 5.99406 6.11532 6.22535 6.40598 6.48772 6.58265 6.72049 6.93012 6.95600 7.10528 7.22445 7.45275 7.69844 7.92070 8.02957 8.20048 8.39876 8.95029 8.95774 9.56688 11.03667 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045669 B = 0.002878 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.953678 B = 9726.420762 C =10047.670200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.611 5.611 13 C 0.722 3.278 14 O -0.581 6.581 15 N -0.621 5.621 16 O -0.130 6.130 17 C 0.041 3.959 18 C -0.104 4.104 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.130 4.130 22 C 0.129 3.871 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.401 0.599 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 -20.959 0.530 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C -0.011 4.011 12 N -0.351 5.351 13 C 0.424 3.576 14 O -0.458 6.458 15 N -0.329 5.329 16 O -0.133 6.133 17 C -0.037 4.037 18 C -0.124 4.124 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.167 4.167 22 C 0.008 3.992 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.013 -20.915 -0.347 21.299 hybrid contribution 1.113 0.829 0.526 1.484 sum 5.126 -20.086 0.179 20.730 Atomic orbital electron populations 1.69868 1.05866 1.26536 1.50483 1.24964 0.94845 0.99072 0.95061 0.86618 0.79940 0.83702 0.77957 1.20821 1.21209 1.19963 1.21162 0.93127 0.90600 1.50363 0.92750 1.18640 0.92567 0.91414 0.94312 1.22029 0.99032 0.94189 1.01019 1.21766 0.91225 0.98801 0.89316 1.47369 1.38993 1.16982 1.31781 1.15301 0.80273 0.78987 0.83049 1.90888 1.45517 1.81268 1.28130 1.46468 1.45128 1.06529 1.34769 1.90552 1.60472 1.14139 1.48169 1.23046 0.93969 0.87941 0.98741 1.22526 0.98099 0.91069 1.00663 1.23024 0.97354 0.95204 1.01724 1.22839 0.96346 0.96795 1.01999 1.22908 0.96765 0.94855 1.02207 1.21750 0.90683 0.85668 1.01144 1.21969 1.00049 0.94506 0.99623 0.92939 0.95132 0.91952 0.92826 0.91512 0.92683 0.75682 0.92134 0.92188 0.87909 0.89919 0.90937 0.89984 0.91204 0.90941 0.89821 0.90302 0.92198 0.88123 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 11.53 55.43 0.64 -23.98 16 2 C 0.06 1.67 5.36 -17.82 -0.10 1.57 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.55 8.49 -34.44 -0.29 -13.84 16 8 H 0.05 1.42 7.75 -52.48 -0.41 1.02 16 9 C 0.05 1.15 2.01 -91.73 -0.18 0.96 16 10 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 11 C 0.11 1.75 6.39 -3.71 -0.02 1.72 16 12 N -0.61 -11.24 2.98 -178.77 -0.53 -11.77 16 13 C 0.72 13.98 8.44 -86.92 -0.73 13.24 16 14 O -0.58 -13.65 16.17 -12.80 -0.21 -13.85 16 15 N -0.62 -9.55 6.30 27.63 0.17 -9.38 16 16 O -0.13 -1.98 11.11 -29.55 -0.33 -2.30 16 17 C 0.04 0.41 6.05 37.16 0.22 0.63 16 18 C -0.10 -0.90 4.00 -89.81 -0.36 -1.26 16 19 C -0.14 -1.10 7.65 -25.83 -0.20 -1.29 16 20 C -0.14 -0.91 8.09 -25.82 -0.21 -1.12 16 21 C -0.13 -0.83 7.65 -25.92 -0.20 -1.03 16 22 C 0.13 2.60 6.41 -3.93 -0.03 2.58 16 23 C -0.12 -2.82 5.18 -26.84 -0.14 -2.96 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.67 5.64 -51.93 -0.29 0.37 16 30 H 0.40 4.78 6.03 -40.82 -0.25 4.53 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 2.57 6.30 -51.92 -0.33 2.24 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -31.66 342.59 -9.57 -41.23 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.08 Total: 2.36 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.37 Total: -3.26 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.28 Total: -45.14 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.54 Total: -16.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.66 -9.57 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824081390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.419 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds