Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48491 * 109.46915 * 270.00093 * 3 2 1 5 5 H 1.48505 * 109.46699 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.47064 * 149.99912 * 3 2 1 7 7 C 1.37875 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00186 * 359.72595 * 7 2 1 10 10 H 1.09007 * 109.49591 * 60.27344 * 9 7 2 11 11 C 1.53038 * 109.50107 * 180.33812 * 9 7 2 12 12 C 1.53041 * 109.53653 * 181.31311 * 11 9 7 13 13 C 1.53191 * 109.31747 * 298.63769 * 12 11 9 14 14 N 1.46918 * 108.77237 * 54.63654 * 13 12 11 15 15 C 1.34775 * 120.63133 * 126.43895 * 14 13 12 16 16 O 1.21595 * 120.00281 * 174.96536 * 15 14 13 17 17 N 1.34778 * 119.99739 * 354.95801 * 15 14 13 18 18 O 1.41602 * 119.99656 * 185.07087 * 17 15 14 19 19 C 1.42900 * 113.99720 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.53782 * 113.61647 * 272.49796 * 20 19 18 22 22 C 1.53779 * 87.08235 * 220.01567 * 21 20 19 23 23 C 1.53781 * 113.61672 * 174.99725 * 20 19 18 24 24 C 1.46933 * 118.76697 * 306.40746 * 14 13 12 25 25 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46086 * 301.33770 * 11 9 7 27 27 H 1.08999 * 109.45745 * 61.31143 * 11 9 7 28 28 H 1.08995 * 109.49640 * 58.59543 * 12 11 9 29 29 H 1.09004 * 109.49380 * 178.68010 * 12 11 9 30 30 H 1.08996 * 109.58365 * 174.42615 * 13 12 11 31 31 H 1.08999 * 109.58309 * 294.84588 * 13 12 11 32 32 H 0.96996 * 120.00318 * 5.07008 * 17 15 14 33 33 H 1.08995 * 109.47239 * 299.99623 * 19 18 17 34 34 H 1.09005 * 109.47379 * 59.99709 * 19 18 17 35 35 H 1.09003 * 112.84739 * 43.79947 * 20 19 18 36 36 H 1.08998 * 113.61280 * 334.56579 * 21 20 19 37 37 H 1.09001 * 113.61344 * 105.46961 * 21 20 19 38 38 H 1.08995 * 113.61873 * 270.88443 * 22 21 20 39 39 H 1.09005 * 113.69318 * 139.98643 * 22 21 20 40 40 H 1.08999 * 113.61727 * 254.53084 * 23 20 19 41 41 H 1.08996 * 113.61585 * 25.35161 * 23 20 19 42 42 H 1.08995 * 109.56606 * 293.79107 * 24 14 13 43 43 H 1.09004 * 109.61751 * 173.35806 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 1 0.6242 -2.5620 -0.8822 11 6 2.2450 -3.6628 0.0151 12 6 1.4809 -4.9886 -0.0111 13 6 0.6044 -5.0931 1.2409 14 7 -0.2542 -3.9034 1.3177 15 6 -1.5906 -4.0277 1.4400 16 8 -2.2816 -3.0392 1.5945 17 7 -2.1611 -5.2478 1.3910 18 8 -3.5716 -5.3711 1.4115 19 6 -4.0379 -6.7207 1.3547 20 6 -5.5676 -6.7334 1.3835 21 6 -6.1570 -6.7457 2.8038 22 6 -7.2052 -7.7391 2.2755 23 6 -6.1755 -8.1345 1.2039 24 6 0.3712 -2.5751 1.2592 25 1 -0.4850 0.8401 -0.0004 26 1 2.8881 -3.5969 -0.8625 27 1 2.8550 -3.6133 0.9170 28 1 0.8517 -5.0284 -0.9001 29 1 2.1897 -5.8166 -0.0292 30 1 -0.0153 -5.9877 1.1794 31 1 1.2374 -5.1448 2.1268 32 1 -1.6056 -6.0414 1.3417 33 1 -3.6876 -7.1877 0.4343 34 1 -3.6541 -7.2741 2.2119 35 1 -6.0094 -5.9790 0.7325 36 1 -5.4878 -7.1730 3.5505 37 1 -6.5783 -5.7881 3.1099 38 1 -8.0957 -7.2595 1.8694 39 1 -7.4385 -8.5425 2.9743 40 1 -6.6117 -8.2982 0.2185 41 1 -5.5108 -8.9416 1.5119 42 1 0.9847 -2.4211 2.1468 43 1 -0.4020 -1.8084 1.2094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824116770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -3.326291 kcal Electronic energy + Delta-G solvation = -22583.705920 eV Core-core repulsion = 19245.894472 eV Total energy + Delta-G solvation = -3337.811448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64977 -39.18703 -37.17298 -36.15488 -33.51265 -32.08028 -31.20051 -29.67142 -28.18563 -25.87786 -25.05705 -24.30818 -23.02690 -21.82989 -20.42231 -19.64077 -18.87238 -18.15028 -17.09214 -16.15005 -16.04849 -15.48764 -14.99374 -14.83518 -14.47496 -14.31619 -13.75777 -13.56734 -13.35313 -12.76121 -12.74270 -12.58009 -12.46665 -12.13406 -11.98663 -11.92088 -11.09021 -10.97698 -10.91668 -10.88045 -10.65865 -10.48455 -10.41265 -10.39004 -10.20439 -9.87850 -9.42236 -9.09499 -8.95329 -8.54773 -8.39165 -7.67432 -5.95658 -4.05011 2.01352 3.33975 3.41375 3.43475 3.87026 4.05368 4.25193 4.31864 4.43534 4.47257 4.56151 4.84875 5.04866 5.12693 5.20201 5.30674 5.34185 5.40598 5.45490 5.46447 5.58486 5.59669 5.61886 5.80402 5.93860 5.94636 6.13168 6.20260 6.30482 6.52637 6.63718 6.77262 6.98095 7.00924 7.20497 7.32379 7.47085 7.75108 7.93826 8.07639 8.42593 8.51745 8.98651 9.28166 9.60579 11.09439 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.003453 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.389361 B = 8106.996134 C = 8852.063842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.114 3.886 14 N -0.615 5.615 15 C 0.717 3.283 16 O -0.564 6.564 17 N -0.625 5.625 18 O -0.131 6.131 19 C 0.042 3.958 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.130 4.130 24 C 0.131 3.869 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -18.700 3.373 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.010 4.010 14 N -0.356 5.356 15 C 0.419 3.581 16 O -0.439 6.439 17 N -0.334 5.334 18 O -0.133 6.133 19 C -0.036 4.036 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.167 4.167 24 C 0.011 3.989 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.238 0.762 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.920 -17.638 3.500 19.649 hybrid contribution 0.732 0.082 -0.099 0.744 sum -7.187 -17.556 3.401 19.273 Atomic orbital electron populations 1.69890 1.05717 1.26913 1.49011 1.25069 0.94878 0.99283 0.94844 0.86590 0.79784 0.83548 0.78046 1.20728 1.21170 1.19929 1.21058 0.92877 0.90054 1.52058 0.92320 1.19011 0.92615 0.92291 0.94143 0.95240 1.21614 0.98541 0.93954 1.00643 1.21961 0.98626 0.99290 0.97370 1.21541 0.93414 0.87053 0.98956 1.47750 1.02249 1.09167 1.76395 1.15443 0.82469 0.81564 0.78654 1.90943 1.61218 1.35950 1.55750 1.46595 0.94488 1.07994 1.84347 1.90575 1.01141 1.24362 1.97253 1.23004 0.95036 0.84798 1.00777 1.22521 0.91828 0.98882 0.99141 1.22991 0.98123 1.00159 0.96007 1.22806 0.97253 0.99425 0.98483 1.22910 0.98185 0.95798 0.99851 1.22288 0.98283 0.79962 0.98340 0.92574 0.92951 0.93088 0.92084 0.92219 0.92560 0.91721 0.76228 0.92327 0.92413 0.87850 0.89976 0.90910 0.89989 0.91287 0.90998 0.89914 0.93915 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 11.38 55.43 0.63 -25.34 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.13 8.57 -34.44 -0.30 -14.43 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 13 C 0.11 1.74 6.43 -3.72 -0.02 1.72 16 14 N -0.61 -12.68 2.97 -178.50 -0.53 -13.21 16 15 C 0.72 15.82 8.44 -86.92 -0.73 15.09 16 16 O -0.56 -15.45 16.19 -12.80 -0.21 -15.66 16 17 N -0.63 -10.69 6.30 27.64 0.17 -10.51 16 18 O -0.13 -2.22 11.11 -29.56 -0.33 -2.54 16 19 C 0.04 0.47 6.06 37.16 0.23 0.69 16 20 C -0.10 -1.02 4.01 -89.81 -0.36 -1.38 16 21 C -0.14 -1.24 7.63 -25.92 -0.20 -1.44 16 22 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 23 C -0.13 -0.94 7.64 -25.92 -0.20 -1.14 16 24 C 0.13 3.23 5.38 -3.70 -0.02 3.21 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.66 5.57 -51.93 -0.29 0.37 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 5.13 6.00 -40.82 -0.24 4.88 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 3.61 5.15 -51.93 -0.27 3.34 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -33.62 342.26 -9.61 -43.23 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.08 Total: 3.57 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.41 Total: -1.06 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.27 Total: -49.05 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.54 Total: -18.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.62 -9.61 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824116770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.905 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds