Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00228 * 2 1 4 4 H 1.48491 * 109.46915 * 270.00093 * 3 2 1 5 5 H 1.48505 * 109.46699 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.47064 * 149.99912 * 3 2 1 7 7 C 1.37875 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00284 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00186 * 359.72595 * 7 2 1 10 10 H 1.09007 * 109.49591 * 60.27344 * 9 7 2 11 11 C 1.53038 * 109.50107 * 180.33812 * 9 7 2 12 12 C 1.53041 * 109.53653 * 181.31311 * 11 9 7 13 13 C 1.53191 * 109.31747 * 298.63769 * 12 11 9 14 14 N 1.46918 * 108.77237 * 54.63654 * 13 12 11 15 15 C 1.34775 * 120.63133 * 126.43895 * 14 13 12 16 16 O 1.21595 * 120.00281 * 174.96536 * 15 14 13 17 17 N 1.34778 * 119.99739 * 354.95801 * 15 14 13 18 18 O 1.41602 * 119.99656 * 185.07087 * 17 15 14 19 19 C 1.42900 * 113.99720 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.53782 * 113.61647 * 272.49796 * 20 19 18 22 22 C 1.53779 * 87.08235 * 220.01567 * 21 20 19 23 23 C 1.53781 * 113.61672 * 174.99725 * 20 19 18 24 24 C 1.46933 * 118.76697 * 306.40746 * 14 13 12 25 25 H 0.97000 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46086 * 301.33770 * 11 9 7 27 27 H 1.08999 * 109.45745 * 61.31143 * 11 9 7 28 28 H 1.08995 * 109.49640 * 58.59543 * 12 11 9 29 29 H 1.09004 * 109.49380 * 178.68010 * 12 11 9 30 30 H 1.08996 * 109.58365 * 174.42615 * 13 12 11 31 31 H 1.08999 * 109.58309 * 294.84588 * 13 12 11 32 32 H 0.96996 * 120.00318 * 5.07008 * 17 15 14 33 33 H 1.08995 * 109.47239 * 299.99623 * 19 18 17 34 34 H 1.09005 * 109.47379 * 59.99709 * 19 18 17 35 35 H 1.09003 * 112.84739 * 43.79947 * 20 19 18 36 36 H 1.08998 * 113.61280 * 334.56579 * 21 20 19 37 37 H 1.09001 * 113.61344 * 105.46961 * 21 20 19 38 38 H 1.08995 * 113.61873 * 270.88443 * 22 21 20 39 39 H 1.09005 * 113.69318 * 139.98643 * 22 21 20 40 40 H 1.08999 * 113.61727 * 254.53084 * 23 20 19 41 41 H 1.08996 * 113.61585 * 25.35161 * 23 20 19 42 42 H 1.08995 * 109.56606 * 293.79107 * 24 14 13 43 43 H 1.09004 * 109.61751 * 173.35806 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0074 10 1 0.6242 -2.5620 -0.8822 11 6 2.2450 -3.6628 0.0151 12 6 1.4809 -4.9886 -0.0111 13 6 0.6044 -5.0931 1.2409 14 7 -0.2542 -3.9034 1.3177 15 6 -1.5906 -4.0277 1.4400 16 8 -2.2816 -3.0392 1.5945 17 7 -2.1611 -5.2478 1.3910 18 8 -3.5716 -5.3711 1.4115 19 6 -4.0379 -6.7207 1.3547 20 6 -5.5676 -6.7334 1.3835 21 6 -6.1570 -6.7457 2.8038 22 6 -7.2052 -7.7391 2.2755 23 6 -6.1755 -8.1345 1.2039 24 6 0.3712 -2.5751 1.2592 25 1 -0.4850 0.8401 -0.0004 26 1 2.8881 -3.5969 -0.8625 27 1 2.8550 -3.6133 0.9170 28 1 0.8517 -5.0284 -0.9001 29 1 2.1897 -5.8166 -0.0292 30 1 -0.0153 -5.9877 1.1794 31 1 1.2374 -5.1448 2.1268 32 1 -1.6056 -6.0414 1.3417 33 1 -3.6876 -7.1877 0.4343 34 1 -3.6541 -7.2741 2.2119 35 1 -6.0094 -5.9790 0.7325 36 1 -5.4878 -7.1730 3.5505 37 1 -6.5783 -5.7881 3.1099 38 1 -8.0957 -7.2595 1.8694 39 1 -7.4385 -8.5425 2.9743 40 1 -6.6117 -8.2982 0.2185 41 1 -5.5108 -8.9416 1.5119 42 1 0.9847 -2.4211 2.1468 43 1 -0.4020 -1.8084 1.2094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824116770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -24.149891 kcal Electronic energy + Delta-G solvation = -22584.608899 eV Core-core repulsion = 19245.894472 eV Total energy + Delta-G solvation = -3338.714427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22549 -40.02382 -38.60682 -37.65243 -35.41020 -33.83212 -32.64559 -31.39284 -29.16618 -26.98725 -26.52025 -25.96567 -23.84399 -23.43519 -22.02711 -20.59611 -20.25447 -19.57747 -18.68623 -18.04956 -17.02975 -16.74654 -16.58465 -16.16219 -15.89011 -15.59347 -15.20752 -15.15193 -14.64106 -14.37835 -14.17722 -13.94096 -13.56529 -13.35549 -13.25342 -12.86989 -12.79026 -12.66391 -12.26462 -12.21463 -12.05381 -11.87691 -11.62233 -11.57906 -11.36731 -11.23797 -11.12733 -10.95448 -10.83590 -10.49603 -10.04128 -9.31430 -8.08091 -6.25614 0.64125 1.42594 1.43777 1.54464 2.16763 2.43151 2.62979 3.20627 3.40050 3.61334 3.69538 3.90405 3.96119 4.04999 4.15878 4.25004 4.28430 4.37842 4.47612 4.61543 4.72266 4.81143 4.81755 4.83188 4.84134 4.89539 5.08218 5.09839 5.13212 5.23750 5.27260 5.29204 5.32301 5.53649 5.56661 5.60304 5.71662 5.93050 6.02276 6.12626 6.36763 6.87624 6.99343 7.44667 7.64573 8.95125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.003453 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.389361 B = 8106.996134 C = 8852.063842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.037 3.963 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.710 3.290 16 O -0.631 6.631 17 N -0.602 5.602 18 O -0.164 6.164 19 C 0.035 3.965 20 C -0.114 4.114 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.115 4.115 24 C 0.144 3.856 25 H 0.259 0.741 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.418 0.582 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.041 0.959 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -21.987 3.682 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.018 3.982 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.015 4.015 14 N -0.355 5.355 15 C 0.412 3.588 16 O -0.511 6.511 17 N -0.312 5.312 18 O -0.167 6.167 19 C -0.041 4.041 20 C -0.134 4.134 21 C -0.181 4.181 22 C -0.173 4.173 23 C -0.153 4.153 24 C 0.022 3.978 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.059 0.941 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.509 -21.032 3.799 22.342 hybrid contribution 0.267 1.019 -0.199 1.072 sum -6.242 -20.013 3.600 21.271 Atomic orbital electron populations 1.70107 1.07527 1.27236 1.50619 1.25936 0.95513 1.03075 0.94676 0.85549 0.78805 0.79076 0.78201 1.20146 1.21584 1.18381 1.21529 0.93378 0.91356 1.50959 0.91648 1.18947 0.93113 0.94031 0.92133 0.99583 1.21509 0.97595 0.93966 1.01209 1.21924 0.99018 0.98442 0.97021 1.21980 0.93639 0.86001 0.99883 1.47618 1.02490 1.09596 1.75831 1.15650 0.82659 0.82130 0.78403 1.90892 1.62925 1.38650 1.58629 1.46063 0.95454 1.07084 1.82579 1.90594 1.00315 1.28374 1.97462 1.23388 0.95651 0.82469 1.02616 1.22633 0.90954 1.00472 0.99380 1.23068 0.99094 1.00074 0.95847 1.22789 0.96813 0.99110 0.98594 1.22899 0.97811 0.94224 1.00356 1.21701 0.96726 0.81253 0.98138 0.93217 0.92776 0.92074 0.93117 0.87289 0.88372 0.89373 0.73566 0.90550 0.90200 0.89728 0.89304 0.92721 0.89953 0.89746 0.90172 0.88176 0.94070 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.12 11.38 21.45 0.24 -56.87 16 2 C 0.01 0.42 5.30 84.65 0.45 0.87 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.53 -29.44 8.57 25.60 0.22 -29.22 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 10 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 11 C -0.11 -3.93 5.11 30.62 0.16 -3.77 16 12 C -0.13 -3.49 6.08 30.67 0.19 -3.30 16 13 C 0.11 2.88 6.43 86.36 0.56 3.43 16 14 N -0.62 -25.33 2.97 -836.90 -2.49 -27.82 16 15 C 0.71 31.91 8.44 179.05 1.51 33.43 16 16 O -0.63 -36.57 16.19 13.28 0.21 -36.36 16 17 N -0.60 -19.93 6.30 -184.74 -1.16 -21.10 16 18 O -0.16 -5.52 11.11 -21.50 -0.24 -5.76 16 19 C 0.04 0.72 6.06 71.98 0.44 1.16 16 20 C -0.11 -2.13 4.01 -10.27 -0.04 -2.17 16 21 C -0.14 -2.50 7.63 31.12 0.24 -2.26 16 22 C -0.14 -1.69 8.08 31.12 0.25 -1.44 16 23 C -0.12 -1.36 7.64 31.12 0.24 -1.13 16 24 C 0.14 7.35 5.38 86.36 0.47 7.81 16 25 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 1.82 5.57 -2.39 -0.01 1.81 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.42 9.50 6.00 -92.71 -0.56 8.95 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 7.84 -2.38 -0.02 1.26 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.41 7.89 -2.39 -0.02 1.39 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.87 8.10 -2.39 -0.02 0.85 16 42 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 4.57 5.15 -2.39 -0.01 4.55 16 Total: -1.00 -80.17 342.26 3.67 -76.50 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.44 Total: 19.32 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.64 Total: 5.25 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.41 Total: -105.79 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.02 Total: -42.11 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -80.17 3.67 -76.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824116770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.354 kcal (2) G-P(sol) polarization free energy of solvation -80.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds