Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47240 * 274.94502 * 3 2 1 5 5 H 1.48497 * 109.47322 * 34.94656 * 3 2 1 6 6 H 1.48499 * 109.47469 * 154.94494 * 3 2 1 7 7 C 1.37875 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99939 * 354.98366 * 7 2 1 9 9 C 1.50704 * 119.99954 * 174.98775 * 7 2 1 10 10 H 1.08994 * 109.52380 * 334.99085 * 9 7 2 11 11 C 1.53039 * 109.49751 * 214.90696 * 9 7 2 12 12 C 1.53036 * 109.53788 * 178.68579 * 11 9 7 13 13 C 1.52757 * 109.38705 * 61.23956 * 12 11 9 14 14 N 1.46925 * 109.00909 * 305.59228 * 13 12 11 15 15 C 1.34786 * 120.63060 * 233.58466 * 14 13 12 16 16 O 1.21586 * 119.99796 * 184.75467 * 15 14 13 17 17 N 1.34769 * 119.99789 * 4.75193 * 15 14 13 18 18 O 1.41605 * 120.00166 * 174.90106 * 17 15 14 19 19 C 1.42897 * 114.00347 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47065 * 179.97438 * 19 18 17 21 21 C 1.53783 * 113.61534 * 274.13537 * 20 19 18 22 22 C 1.53955 * 87.01751 * 220.04993 * 21 20 19 23 23 C 1.53774 * 87.11506 * 25.36405 * 22 21 20 24 24 C 1.46921 * 118.74061 * 53.30178 * 14 13 12 25 25 H 0.97003 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46052 * 298.70507 * 11 9 7 27 27 H 1.08995 * 109.45664 * 58.66225 * 11 9 7 28 28 H 1.09003 * 109.49965 * 181.32094 * 12 11 9 29 29 H 1.09003 * 109.49638 * 301.37922 * 12 11 9 30 30 H 1.08999 * 109.51256 * 185.70602 * 13 12 11 31 31 H 1.09001 * 109.43398 * 65.42257 * 13 12 11 32 32 H 0.97006 * 120.00322 * 354.89163 * 17 15 14 33 33 H 1.08998 * 109.46796 * 300.00071 * 19 18 17 34 34 H 1.09002 * 109.46769 * 59.99693 * 19 18 17 35 35 H 1.09002 * 112.85126 * 45.33660 * 20 19 18 36 36 H 1.09000 * 113.61011 * 334.57189 * 21 20 19 37 37 H 1.09001 * 113.61181 * 105.46725 * 21 20 19 38 38 H 1.08998 * 113.53574 * 270.80840 * 22 21 20 39 39 H 1.08996 * 113.74030 * 139.94795 * 22 21 20 40 40 H 1.09000 * 113.61562 * 220.08984 * 23 22 21 41 41 H 1.08997 * 113.61552 * 89.18157 * 23 22 21 42 42 H 1.09009 * 109.58516 * 66.43328 * 24 14 13 43 43 H 1.09005 * 109.59272 * 186.71424 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3921 2.1068 -1.3949 5 1 1.5028 2.6202 0.8020 6 1 3.5950 1.4123 0.5929 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1275 0.0827 9 6 3.5072 -1.1966 -0.1135 10 1 3.8360 -0.2863 -0.6148 11 6 3.9560 -2.4158 -0.9223 12 6 5.4795 -2.4016 -1.0666 13 6 6.1207 -2.4767 0.3179 14 7 5.5833 -1.3943 1.1535 15 6 6.4112 -0.5360 1.7817 16 8 5.9588 0.3011 2.5386 17 7 7.7405 -0.6059 1.5709 18 8 8.6002 0.3621 2.1447 19 6 9.9823 0.1658 1.8395 20 6 10.8129 1.2636 2.5071 21 6 10.9234 2.5482 1.6689 22 6 12.3938 2.6198 2.1196 23 6 12.3287 1.0953 2.3099 24 6 4.1261 -1.2614 1.2864 25 1 -0.4850 0.8400 -0.0004 26 1 3.6485 -3.3261 -0.4078 27 1 3.4973 -2.3848 -1.9105 28 1 5.7965 -3.2575 -1.6626 29 1 5.7897 -1.4802 -1.5595 30 1 7.2010 -2.3650 0.2254 31 1 5.8886 -3.4395 0.7733 32 1 8.1084 -1.3192 1.0262 33 1 10.3015 -0.8082 2.2104 34 1 10.1255 0.2081 0.7598 35 1 10.5245 1.4417 3.5431 36 1 10.8024 2.3827 0.5984 37 1 10.3105 3.3680 2.0435 38 1 12.5377 3.1702 3.0494 39 1 13.0794 2.9327 1.3322 40 1 12.8486 0.7439 3.2011 41 1 12.5926 0.5319 1.4148 42 1 3.7279 -2.1231 1.8223 43 1 3.8908 -0.3493 1.8349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824116771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -3.658251 kcal Electronic energy + Delta-G solvation = -22649.155586 eV Core-core repulsion = 19311.329743 eV Total energy + Delta-G solvation = -3337.825843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.91164 -39.31175 -37.38750 -36.38896 -33.58594 -32.20742 -31.43008 -30.35708 -28.33162 -25.95774 -25.23771 -24.50876 -23.13457 -21.90805 -20.50047 -19.71375 -19.02463 -18.41116 -17.30121 -16.71898 -16.22627 -15.62830 -15.18142 -15.02963 -14.68528 -14.22063 -13.91175 -13.76554 -13.50894 -12.94898 -12.81857 -12.81751 -12.56603 -12.40074 -12.26470 -12.08527 -11.33232 -11.19453 -11.09044 -10.96331 -10.73756 -10.61155 -10.56632 -10.48709 -10.06112 -9.74751 -9.67197 -9.35321 -9.09341 -8.78320 -8.59642 -7.97678 -6.09649 -4.10525 1.79825 3.34522 3.46203 3.57747 3.59459 3.79803 4.12698 4.22656 4.33448 4.46446 4.48211 4.70460 4.94176 4.99643 5.05277 5.17116 5.21253 5.31165 5.33073 5.38334 5.45920 5.50327 5.54435 5.73097 5.78827 5.85756 5.94313 6.11670 6.13939 6.20788 6.38247 6.58151 6.64660 6.73524 6.90621 6.97527 7.19837 7.31034 7.41085 7.75909 8.19148 8.49618 8.94789 8.99052 9.54037 11.02594 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.003907 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.487962 B = 7164.267479 C = 7873.779253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.035 0.965 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.116 3.884 14 N -0.617 5.617 15 C 0.718 3.282 16 O -0.573 6.573 17 N -0.623 5.623 18 O -0.130 6.130 19 C 0.041 3.959 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.129 4.129 24 C 0.131 3.869 25 H 0.265 0.735 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.716 -2.421 0.363 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.053 0.947 11 C -0.141 4.141 12 C -0.177 4.177 13 C -0.008 4.008 14 N -0.358 5.358 15 C 0.420 3.580 16 O -0.448 6.448 17 N -0.331 5.331 18 O -0.133 6.133 19 C -0.037 4.037 20 C -0.124 4.124 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.167 4.167 24 C 0.010 3.990 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 24.137 -1.494 1.066 24.207 hybrid contribution 0.852 0.442 -0.403 1.041 sum 24.989 -1.052 0.663 25.020 Atomic orbital electron populations 1.69901 1.06390 1.27166 1.49779 1.25063 0.94678 0.99091 0.93820 0.86987 0.81574 0.83743 0.78309 1.20578 1.21294 1.17607 1.20881 0.88383 0.94665 1.51235 0.90621 1.19510 0.96383 0.94576 0.90987 0.94682 1.21548 0.91628 0.99880 1.01018 1.21950 0.98806 1.01562 0.95352 1.21496 0.96167 0.90912 0.92240 1.47726 1.07554 1.30490 1.50066 1.15421 0.78719 0.82479 0.81363 1.90918 1.74776 1.39282 1.39834 1.46525 1.02190 1.27644 1.56759 1.90576 1.14106 1.38540 1.70074 1.23036 0.81348 0.99470 0.99802 1.22528 0.94113 0.94723 1.01019 1.23024 0.96545 0.97746 1.00025 1.22835 0.97180 0.96133 1.01815 1.22904 0.94290 0.97159 1.02322 1.22499 0.72953 1.02434 1.01103 0.92539 0.92642 0.92082 0.91661 0.92102 0.92287 0.91273 0.75943 0.92249 0.92233 0.87918 0.89907 0.90892 0.89990 0.91199 0.90964 0.89860 0.92024 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 22.39 26.62 -169.99 -4.53 17.86 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.25 -6.63 5.98 56.52 0.34 -6.29 16 7 C -0.51 -14.01 8.86 -34.44 -0.31 -14.32 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.01 0.12 1.79 -91.65 -0.16 -0.04 16 10 H 0.03 0.85 5.60 -51.93 -0.29 0.56 16 11 C -0.10 -1.89 5.15 -26.69 -0.14 -2.03 16 12 C -0.14 -1.96 6.06 -26.84 -0.16 -2.12 16 13 C 0.12 1.55 6.40 -3.93 -0.03 1.53 16 14 N -0.62 -11.44 2.98 -178.76 -0.53 -11.97 16 15 C 0.72 14.44 8.44 -86.92 -0.73 13.70 16 16 O -0.57 -14.38 16.19 -12.79 -0.21 -14.59 16 17 N -0.62 -9.67 6.30 27.63 0.17 -9.50 16 18 O -0.13 -2.03 11.11 -29.55 -0.33 -2.36 16 19 C 0.04 0.41 6.05 37.16 0.22 0.64 16 20 C -0.10 -0.93 4.00 -89.80 -0.36 -1.29 16 21 C -0.14 -1.18 7.65 -25.83 -0.20 -1.38 16 22 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 23 C -0.13 -0.84 7.65 -25.92 -0.20 -1.04 16 24 C 0.13 2.86 5.50 -3.71 -0.02 2.84 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.60 5.57 -51.93 -0.29 0.31 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 4.54 6.00 -40.82 -0.24 4.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 7.87 -51.93 -0.41 0.12 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 43 H 0.08 2.12 5.92 -51.93 -0.31 1.82 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -34.65 339.51 -8.98 -43.64 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.07 Total: 0.87 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.39 Total: -2.56 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.42 Total: -47.98 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.54 Total: -16.95 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.53 Total: 17.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.65 -8.98 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824116771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.977 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds