Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46905 * 239.99512 * 3 2 1 5 5 H 1.48498 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47392 * 119.99568 * 3 2 1 7 7 C 1.37872 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99947 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.62696 * 56.89466 * 9 7 2 11 11 C 1.55140 * 110.70554 * 293.59571 * 9 7 2 12 12 C 1.54908 * 101.65126 * 205.96389 * 11 9 7 13 13 N 1.47844 * 104.79564 * 37.07155 * 12 11 9 14 14 C 1.46899 * 110.99973 * 213.63419 * 13 12 11 15 15 C 1.53001 * 109.46926 * 290.84328 * 14 13 12 16 16 C 1.50708 * 109.46690 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00466 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99810 * 179.97438 * 16 15 14 19 19 C 1.47536 * 125.63708 * 359.96019 * 18 16 15 20 20 C 1.54906 * 104.78210 * 155.91463 * 19 18 16 21 21 C 1.55156 * 101.61451 * 37.00903 * 20 19 18 22 22 C 1.47019 * 125.64982 * 180.02562 * 18 16 15 23 23 C 1.47443 * 108.56741 * 335.90440 * 13 12 11 24 24 H 0.96997 * 119.99864 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00274 * 303.10127 * 10 9 7 26 26 H 1.09005 * 110.98826 * 324.05604 * 11 9 7 27 27 H 1.09000 * 110.98882 * 87.83222 * 11 9 7 28 28 H 1.08993 * 110.37216 * 278.24138 * 12 11 9 29 29 H 1.08996 * 110.36958 * 155.89849 * 12 11 9 30 30 H 1.08999 * 109.47208 * 170.84425 * 14 13 12 31 31 H 1.08998 * 109.47016 * 50.84116 * 14 13 12 32 32 H 1.08999 * 109.47098 * 60.00030 * 15 14 13 33 33 H 1.08996 * 109.47409 * 299.99313 * 15 14 13 34 34 H 1.09008 * 110.40688 * 37.08339 * 19 18 16 35 35 H 1.08997 * 110.36984 * 274.72981 * 19 18 16 36 36 H 1.09002 * 111.00655 * 278.91303 * 20 19 18 37 37 H 1.09002 * 111.00329 * 155.10229 * 20 19 18 38 38 H 1.09001 * 110.72614 * 82.84221 * 21 20 19 39 39 H 1.09000 * 110.71772 * 205.93721 * 21 20 19 40 40 H 1.09000 * 109.88286 * 61.60220 * 22 18 16 41 41 H 1.09000 * 109.88178 * 300.43920 * 22 18 16 42 42 H 1.08998 * 109.88806 * 120.39996 * 23 13 12 43 43 H 1.09004 * 109.88362 * 241.41868 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3671 -2.5701 -1.1201 11 6 0.4731 -2.6834 1.3301 12 6 0.3727 -4.2265 1.4225 13 7 1.6616 -4.7211 0.8937 14 6 1.4855 -5.9954 0.1843 15 6 1.1361 -7.0946 1.1896 16 6 0.9548 -8.4017 0.4618 17 8 1.0919 -8.4495 -0.7423 18 7 0.6412 -9.5178 1.1491 19 6 0.4475 -9.6023 2.6092 20 6 -0.4616 -10.8393 2.8164 21 6 0.0724 -11.8055 1.7262 22 6 0.4368 -10.8528 0.5681 23 6 2.2283 -3.6934 0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2678 -1.8422 -1.1670 26 1 1.0357 -2.2777 2.1710 27 1 -0.5163 -2.2300 1.2697 28 1 -0.4530 -4.5903 0.8111 29 1 0.2437 -4.5369 2.4594 30 1 2.4100 -6.2550 -0.3313 31 1 0.6790 -5.8981 -0.5425 32 1 0.2116 -6.8349 1.7053 33 1 1.9425 -7.1919 1.9164 34 1 -0.0448 -8.7032 2.9800 35 1 1.4043 -9.7463 3.1111 36 1 -1.5076 -10.5895 2.6389 37 1 -0.3265 -11.2610 3.8125 38 1 0.9557 -12.3368 2.0807 39 1 -0.7025 -12.5090 1.4214 40 1 1.3532 -11.1908 0.0843 41 1 -0.3773 -10.8213 -0.1560 42 1 3.2023 -3.3754 0.3730 43 1 2.3294 -4.0935 -1.0078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829998524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -84.268713 kcal Electronic energy + Delta-G solvation = -22641.427297 eV Core-core repulsion = 19300.105922 eV Total energy + Delta-G solvation = -3341.321375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12506 -38.40714 -37.43699 -34.87155 -32.28970 -32.03735 -31.33341 -29.41635 -28.41089 -27.86692 -24.83844 -23.84927 -22.43295 -21.35467 -20.05741 -19.42911 -19.09838 -17.21425 -17.05480 -16.80106 -15.50070 -15.22278 -14.91835 -14.78309 -14.14552 -13.97118 -13.75213 -13.69821 -13.57839 -12.83728 -12.75145 -12.31064 -12.21186 -11.91017 -11.81812 -11.66997 -11.58905 -11.24751 -11.17209 -11.09788 -10.86775 -10.67886 -10.49273 -10.41283 -10.26362 -9.90149 -9.77761 -9.21694 -8.80504 -8.58244 -8.06115 -7.62611 -6.18479 -4.25375 2.66014 2.84192 3.26601 3.31037 3.34411 4.13900 4.22797 4.32979 4.53586 4.60006 4.93326 4.98581 5.02671 5.08180 5.22550 5.25261 5.36819 5.40356 5.46704 5.57237 5.62752 5.72847 5.79867 5.81918 5.95759 6.12791 6.18540 6.24964 6.33195 6.37687 6.50095 6.59676 6.98744 7.09691 7.37256 7.44631 7.50962 7.69865 7.79871 7.86250 8.16705 8.18023 8.75729 9.42516 9.57117 10.88819 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046570 B = 0.003101 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.099326 B = 9028.608309 C = 9195.505282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.236 3.764 10 O -0.591 6.591 11 C -0.131 4.131 12 C 0.039 3.961 13 N -0.532 5.532 14 C 0.068 3.932 15 C -0.127 4.127 16 C 0.530 3.470 17 O -0.537 6.537 18 N -0.626 5.626 19 C 0.098 3.902 20 C -0.134 4.134 21 C -0.132 4.132 22 C 0.106 3.894 23 C 0.058 3.942 24 H 0.267 0.733 25 H 0.383 0.617 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 -19.576 7.930 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.169 4.169 12 C -0.089 4.089 13 N -0.256 5.256 14 C -0.061 4.061 15 C -0.168 4.168 16 C 0.319 3.681 17 O -0.414 6.414 18 N -0.363 5.363 19 C -0.025 4.025 20 C -0.172 4.172 21 C -0.170 4.170 22 C -0.017 4.017 23 C -0.069 4.069 24 H 0.077 0.923 25 H 0.235 0.765 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.976 -20.033 7.503 21.414 hybrid contribution -0.490 1.497 -0.402 1.625 sum -1.466 -18.536 7.101 19.903 Atomic orbital electron populations 1.69585 1.05978 1.27527 1.50986 1.25013 0.94999 0.99474 0.93793 0.86503 0.79536 0.82295 0.78764 1.20116 1.21214 1.20102 1.21591 0.93584 0.90676 1.51074 0.91977 1.19709 0.86264 0.91752 0.82723 1.86093 1.51579 1.53240 1.49241 1.23158 1.01815 0.91279 1.00697 1.23099 0.89930 0.97742 0.98105 1.63640 1.24334 1.02812 1.34847 1.21939 1.01387 0.88967 0.93820 1.21602 1.03991 0.91218 0.99958 1.20629 0.75528 0.84517 0.87382 1.90713 1.50476 1.85674 1.14492 1.48618 1.70969 1.08452 1.08227 1.22380 0.99649 0.99389 0.81099 1.22790 0.99790 0.95154 0.99507 1.22647 1.01701 0.97377 0.95308 1.21883 1.01382 0.82198 0.96244 1.22822 0.98573 0.91273 0.94205 0.92266 0.76548 0.91792 0.90959 0.94518 0.92189 0.90826 0.93949 0.89119 0.88338 0.90145 0.91109 0.90466 0.89716 0.90567 0.90024 0.91560 0.91547 0.90215 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 10.69 55.43 0.59 -23.72 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.44 8.21 -34.44 -0.28 -14.73 16 8 H 0.06 1.67 7.53 -52.48 -0.40 1.28 16 9 C 0.24 6.00 0.85 -89.95 -0.08 5.92 16 10 O -0.59 -15.98 13.09 -35.23 -0.46 -16.44 16 11 C -0.13 -3.05 5.67 -24.59 -0.14 -3.19 16 12 C 0.04 0.77 5.78 -2.30 -0.01 0.75 16 13 N -0.53 -10.51 5.16 -231.26 -1.19 -11.71 16 14 C 0.07 1.22 3.85 -3.82 -0.01 1.21 16 15 C -0.13 -1.78 4.75 -27.88 -0.13 -1.91 16 16 C 0.53 7.85 7.85 -10.98 -0.09 7.76 16 17 O -0.54 -10.13 16.31 5.56 0.09 -10.04 16 18 N -0.63 -7.09 3.33 -170.43 -0.57 -7.65 16 19 C 0.10 0.75 6.70 -2.47 -0.02 0.73 16 20 C -0.13 -0.76 7.08 -24.58 -0.17 -0.94 16 21 C -0.13 -0.79 6.95 -24.90 -0.17 -0.97 16 22 C 0.11 1.01 6.87 -3.07 -0.02 0.99 16 23 C 0.06 1.33 6.21 -2.84 -0.02 1.31 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.38 10.49 6.98 45.56 0.32 10.81 16 26 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 27 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 28 H 0.04 0.74 7.62 -51.93 -0.40 0.34 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.35 7.99 -51.93 -0.41 0.94 16 31 H 0.04 0.86 7.80 -51.93 -0.41 0.46 16 32 H 0.09 1.17 7.20 -51.93 -0.37 0.79 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 0.58 7.48 -51.92 -0.39 0.19 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.78 7.63 -51.93 -0.40 1.38 16 43 H 0.05 1.11 7.48 -51.93 -0.39 0.72 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -30.88 340.60 -9.27 -40.15 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.60 Total: 9.74 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.24 Total: -1.31 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -1.17 Total: -43.09 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.37 Total: -26.48 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.88 -9.27 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829998524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.123 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds