Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47092 * 239.99349 * 3 2 1 5 5 H 1.48500 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46843 * 119.99617 * 3 2 1 7 7 C 1.37881 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00013 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00164 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99691 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00053 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.46944 * 174.28452 * 13 11 10 15 15 C 1.47016 * 111.00148 * 300.57884 * 14 13 11 16 16 C 1.53097 * 109.26190 * 182.39586 * 15 14 13 17 17 O 1.43024 * 109.25491 * 303.15187 * 16 15 14 18 18 C 1.43009 * 113.73726 * 58.67114 * 17 16 15 19 19 C 1.47012 * 111.00433 * 64.21345 * 14 13 11 20 20 H 1.09002 * 109.50558 * 297.58888 * 19 14 13 21 21 C 1.53006 * 109.50359 * 57.67022 * 19 14 13 22 22 C 1.53773 * 113.61535 * 277.49833 * 21 19 14 23 23 C 1.53779 * 87.08328 * 220.01975 * 22 21 19 24 24 C 1.53783 * 113.61019 * 179.97438 * 21 19 14 25 25 H 0.96997 * 120.00171 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 60.00016 * 9 7 2 27 27 H 1.08998 * 109.47196 * 299.99755 * 9 7 2 28 28 H 0.97001 * 119.99766 * 359.97438 * 10 9 7 29 29 H 1.08997 * 109.47465 * 294.28090 * 13 11 10 30 30 H 1.09003 * 109.47258 * 54.28224 * 13 11 10 31 31 H 1.09007 * 109.50517 * 302.32655 * 15 14 13 32 32 H 1.08996 * 109.50821 * 62.45402 * 15 14 13 33 33 H 1.08992 * 109.50973 * 183.21565 * 16 15 14 34 34 H 1.09000 * 109.54231 * 63.10517 * 16 15 14 35 35 H 1.09004 * 109.50369 * 181.39379 * 18 17 16 36 36 H 1.08999 * 109.51342 * 61.26752 * 18 17 16 37 37 H 1.08998 * 112.84648 * 48.81265 * 21 19 14 38 38 H 1.08998 * 113.61527 * 334.56937 * 22 21 19 39 39 H 1.09005 * 113.61616 * 105.47109 * 22 21 19 40 40 H 1.08998 * 113.61476 * 270.88944 * 23 22 21 41 41 H 1.08997 * 113.61427 * 139.97906 * 23 22 21 42 42 H 1.08995 * 113.61816 * 254.53013 * 24 21 19 43 43 H 1.09004 * 113.61528 * 25.44068 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0288 0.0006 14 7 2.0038 -7.2965 0.1378 15 6 1.2270 -7.3250 1.3856 16 6 0.5323 -8.6830 1.5171 17 8 -0.2849 -8.9082 0.3652 18 6 0.4396 -8.8878 -0.8676 19 6 1.1333 -7.5319 -1.0232 20 1 0.3832 -6.7431 -1.0816 21 6 1.9749 -7.5321 -2.3010 22 6 2.2671 -6.1244 -2.8465 23 6 2.0364 -6.7063 -4.2512 24 6 1.1540 -7.7722 -3.5791 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4353 0.0002 29 1 3.2912 -6.0302 -0.9357 30 1 3.4247 -5.9152 0.8355 31 1 1.8949 -7.1743 2.2337 32 1 0.4780 -6.5334 1.3662 33 1 -0.0902 -8.6883 2.4117 34 1 1.2823 -9.4705 1.5909 35 1 -0.2501 -9.0412 -1.6977 36 1 1.1873 -9.6809 -0.8637 37 1 2.8592 -8.1648 -2.2252 38 1 1.5257 -5.3806 -2.5549 39 1 3.2911 -5.7931 -2.6739 40 1 2.9384 -7.1122 -4.7092 41 1 1.4866 -6.0394 -4.9152 42 1 1.2798 -8.7706 -3.9978 43 1 0.1082 -7.4789 -3.4879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830239916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = -53.718189 kcal Electronic energy + Delta-G solvation = -23647.927521 eV Core-core repulsion = 20307.930916 eV Total energy + Delta-G solvation = -3339.996605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66381 -38.46224 -38.00567 -35.13868 -34.07263 -32.40097 -31.22706 -29.49698 -27.23472 -26.04807 -25.22483 -24.50979 -22.62792 -22.33724 -20.27629 -19.63609 -19.40890 -17.17590 -16.53647 -16.21781 -15.85902 -15.77891 -15.12885 -15.06820 -14.63078 -14.45106 -14.35298 -14.08760 -13.39690 -13.11228 -12.77246 -12.36657 -12.28255 -12.10643 -11.96844 -11.78915 -11.67964 -11.42549 -11.03915 -10.97114 -10.79342 -10.62351 -10.38597 -10.31565 -10.18825 -10.01437 -9.79321 -9.45111 -9.39557 -8.76092 -7.92738 -7.83410 -6.19955 -4.27435 3.22444 3.25483 3.27599 3.28925 3.85224 3.99870 4.08641 4.35369 4.56819 4.69979 4.79766 4.87234 5.07966 5.15998 5.17552 5.34288 5.37524 5.42598 5.49949 5.57638 5.61302 5.63892 5.68185 5.71376 5.74613 5.86048 5.91333 5.97884 6.04308 6.20930 6.28935 6.41586 6.57998 6.99145 7.09306 7.25815 7.26847 7.39511 7.46524 7.61826 7.93174 8.56278 8.72842 9.03403 9.39401 10.90061 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.004502 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.024720 B = 6218.112521 C = 6972.923598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.710 5.710 11 C 0.469 3.531 12 O -0.552 6.552 13 C 0.020 3.980 14 N -0.507 5.507 15 C -0.003 4.003 16 C 0.069 3.931 17 O -0.385 6.385 18 C 0.075 3.925 19 C 0.038 3.962 20 H 0.093 0.907 21 C -0.101 4.101 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.390 0.610 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -16.710 -3.062 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.358 5.358 11 C 0.253 3.747 12 O -0.433 6.433 13 C -0.111 4.111 14 N -0.230 5.230 15 C -0.131 4.131 16 C -0.008 4.008 17 O -0.303 6.303 18 C -0.002 4.002 19 C -0.070 4.070 20 H 0.111 0.889 21 C -0.120 4.120 22 C -0.178 4.178 23 C -0.179 4.179 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.222 0.778 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.388 -17.139 -3.016 18.218 hybrid contribution 0.708 1.908 0.043 2.036 sum 6.096 -15.231 -2.973 16.673 Atomic orbital electron populations 1.69962 1.06132 1.27453 1.48735 1.24952 0.94898 0.99459 0.94633 0.86481 0.79435 0.82326 0.78711 1.20046 1.21038 1.20047 1.21185 0.93198 0.90496 1.53437 0.91982 1.19067 0.88316 0.82117 0.97537 1.46620 1.11090 1.06475 1.71612 1.21702 0.90291 0.85223 0.77472 1.90573 1.17076 1.84333 1.51349 1.22530 0.96571 0.87067 1.04956 1.62678 1.28044 1.29841 1.02470 1.23050 0.98417 0.99434 0.92221 1.22588 0.94082 0.95420 0.88691 1.87972 1.35234 1.92536 1.14562 1.22600 0.95400 0.95602 0.86620 1.22655 0.95529 0.99237 0.89603 0.88892 1.22539 0.98922 0.97834 0.92683 1.23159 1.01869 0.96695 0.96113 1.22796 0.99866 0.98477 0.96721 1.22904 0.99236 0.99036 0.96055 0.92370 0.95701 0.95725 0.77757 0.87148 0.88670 0.90524 0.90061 0.88877 0.93040 0.88932 0.93098 0.88835 0.89520 0.91464 0.90403 0.91479 0.91554 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 10 N -0.71 -14.38 5.55 -61.48 -0.34 -14.72 16 11 C 0.47 8.82 5.78 -10.99 -0.06 8.75 16 12 O -0.55 -12.42 11.59 5.56 0.06 -12.35 16 13 C 0.02 0.29 5.33 -4.98 -0.03 0.26 16 14 N -0.51 -7.18 4.75 -227.77 -1.08 -8.26 16 15 C 0.00 -0.05 5.25 -3.71 -0.02 -0.07 16 16 C 0.07 0.90 7.01 37.21 0.26 1.16 16 17 O -0.38 -5.83 10.83 -35.23 -0.38 -6.21 16 18 C 0.07 0.98 6.04 37.21 0.22 1.21 16 19 C 0.04 0.54 1.58 -67.60 -0.11 0.44 16 20 H 0.09 1.71 5.38 -51.93 -0.28 1.43 16 21 C -0.10 -1.20 2.83 -89.81 -0.25 -1.46 16 22 C -0.14 -1.83 5.40 -25.92 -0.14 -1.97 16 23 C -0.14 -1.55 8.08 -25.90 -0.21 -1.76 16 24 C -0.13 -1.45 6.76 -25.89 -0.18 -1.62 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 29 H 0.11 1.39 4.57 -51.93 -0.24 1.15 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.50 5.58 -51.93 -0.29 1.22 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.42 6.98 -51.93 -0.36 1.06 16 39 H 0.07 0.81 6.91 -51.93 -0.36 0.45 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -31.20 329.96 -8.87 -40.07 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.87 Total: 7.88 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.95 Total: -1.80 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.69 Total: -48.25 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.32 Total: -18.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.20 -8.87 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830239916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.643 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds