Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99978 * 2 1 4 4 C 1.53003 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.50698 * 110.01686 * 297.64193 * 4 3 2 6 6 O 1.20831 * 119.99891 * 246.50492 * 5 4 3 7 7 O 1.34227 * 120.00334 * 66.50312 * 5 4 3 8 8 C 1.45200 * 117.00122 * 185.35067 * 7 5 4 9 9 C 1.52999 * 109.47034 * 183.48850 * 8 7 5 10 10 C 1.50706 * 115.54813 * 273.11151 * 9 8 7 11 11 H 1.08000 * 119.99892 * 115.06528 * 10 9 8 12 12 C 1.37877 * 120.00010 * 295.06478 * 10 9 8 13 13 N 1.31515 * 119.99795 * 356.26931 * 12 10 9 14 14 Si 1.86801 * 120.00083 * 176.26935 * 12 10 9 15 15 H 1.48495 * 109.46833 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47012 * 120.00313 * 14 12 10 17 17 H 1.48501 * 109.46878 * 239.99760 * 14 12 10 18 18 C 1.52998 * 117.50232 * 127.40641 * 9 8 7 19 19 C 1.53000 * 60.00081 * 252.50586 * 18 9 8 20 20 C 1.54273 * 110.02996 * 59.02851 * 4 3 2 21 21 C 1.54964 * 104.15748 * 95.75659 * 20 4 3 22 22 C 1.54889 * 102.77890 * 37.88772 * 21 20 4 23 23 C 1.53876 * 110.03488 * 176.24584 * 4 3 2 24 24 H 1.09004 * 109.46834 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47227 * 299.99829 * 1 2 3 26 26 H 1.08997 * 109.47299 * 60.00377 * 1 2 3 27 27 H 1.08997 * 109.47149 * 59.99980 * 3 2 1 28 28 H 1.09001 * 109.46799 * 299.99671 * 3 2 1 29 29 H 1.08994 * 109.47706 * 63.48677 * 8 7 5 30 30 H 1.09004 * 109.47012 * 303.47944 * 8 7 5 31 31 H 0.97004 * 119.99730 * 185.02618 * 13 12 10 32 32 H 1.08995 * 117.50040 * 359.97438 * 18 9 8 33 33 H 1.09000 * 117.50130 * 145.01762 * 18 9 8 34 34 H 1.09000 * 117.50323 * 252.51198 * 19 18 9 35 35 H 1.09001 * 117.52018 * 107.48015 * 19 18 9 36 36 H 1.09001 * 110.48524 * 214.39752 * 20 4 3 37 37 H 1.08997 * 110.48902 * 337.04813 * 20 4 3 38 38 H 1.08996 * 110.72095 * 279.57055 * 21 20 4 39 39 H 1.09001 * 110.76545 * 156.21837 * 21 20 4 40 40 H 1.08998 * 110.48824 * 203.40787 * 22 21 20 41 41 H 1.08995 * 110.48840 * 80.76345 * 22 21 20 42 42 H 1.09003 * 110.02899 * 359.95543 * 23 4 3 43 43 H 1.08997 * 110.02762 * 121.38304 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9973 0.4893 1.2553 6 8 4.6454 1.0932 2.0770 7 8 3.6887 -0.8009 1.4600 8 6 4.0623 -1.3728 2.7413 9 6 3.7109 -2.8617 2.7571 10 6 2.3046 -3.1931 3.1859 11 1 1.6187 -3.6453 2.4849 12 6 1.8937 -2.9190 4.4732 13 7 2.7493 -2.4366 5.3478 14 14 0.1220 -3.2329 4.9750 15 1 -0.6325 -3.7727 3.8155 16 1 0.0894 -4.2151 6.0882 17 1 -0.4994 -1.9596 5.4200 18 6 4.8178 -3.8449 3.1432 19 6 4.3516 -3.7503 1.6890 20 6 4.0038 0.3992 -1.2418 21 6 4.3637 1.4992 -2.2722 22 6 5.0106 2.5961 -1.3906 23 6 4.1749 2.5811 -0.0940 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.5210 -0.8632 3.5384 30 1 5.1346 -1.2510 2.8947 31 1 2.4804 -2.3122 6.2715 32 1 5.7965 -3.4310 3.3856 33 1 4.5291 -4.7316 3.7077 34 1 3.7561 -4.5747 1.2967 35 1 5.0232 -3.2741 0.9748 36 1 4.8812 -0.2025 -1.0043 37 1 3.1991 -0.2309 -1.6206 38 1 3.4663 1.8769 -2.7623 39 1 5.0766 1.1231 -3.0060 40 1 4.9403 3.5683 -1.8784 41 1 6.0506 2.3497 -1.1770 42 1 3.3986 3.3448 -0.1412 43 1 4.8192 2.7557 0.7676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838809880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = -119.711133 kcal Electronic energy + Delta-G solvation = -23768.620844 eV Core-core repulsion = 20393.469819 eV Total energy + Delta-G solvation = -3375.151025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36494 -38.19926 -36.92885 -36.40784 -35.02366 -32.00481 -30.79351 -28.74336 -26.92231 -26.39339 -25.24087 -24.46111 -22.20162 -21.09412 -20.65125 -19.14267 -18.78786 -17.13379 -16.52113 -16.14023 -15.93141 -15.64376 -15.17122 -14.96749 -14.60168 -14.45852 -13.83943 -13.34002 -13.30755 -12.87224 -12.39544 -12.24080 -11.85287 -11.65151 -11.48800 -11.30308 -11.16244 -11.05578 -10.98664 -10.93136 -10.79768 -10.63695 -10.54292 -10.48706 -10.23296 -9.82597 -9.71700 -9.47670 -9.28616 -8.74810 -8.53968 -8.16085 -6.04042 -4.08364 2.83395 3.27710 3.36116 3.40247 3.44180 3.86664 4.40250 4.51767 4.60791 4.85120 5.13415 5.15741 5.23113 5.28635 5.39345 5.43744 5.49065 5.51895 5.59019 5.62864 5.66165 5.79491 5.86737 5.95389 5.96854 6.08083 6.09221 6.21408 6.29298 6.36099 6.38483 6.43121 6.70495 6.75672 6.81103 7.04996 7.34476 7.38968 7.47183 7.52718 7.90115 8.42531 8.58320 8.91834 9.55344 11.04885 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.005842 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.556321 B = 4791.589120 C = 5395.597294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.077 3.923 4 C -0.054 4.054 5 C 0.467 3.533 6 O -0.526 6.526 7 O -0.323 6.323 8 C 0.114 3.886 9 C 0.047 3.953 10 C -0.482 4.482 11 H 0.064 0.936 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.169 4.169 19 C -0.195 4.195 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.117 4.117 24 H 0.089 0.911 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 8.753 -13.579 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C 0.000 4.000 4 C -0.055 4.055 5 C 0.310 3.690 6 O -0.417 6.417 7 O -0.237 6.237 8 C 0.041 3.959 9 C 0.046 3.954 10 C -0.519 4.519 11 H 0.082 0.918 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.206 4.206 19 C -0.232 4.232 20 C -0.142 4.142 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.154 4.154 24 H 0.108 0.892 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.132 8.819 -13.121 15.810 hybrid contribution -1.053 0.107 0.751 1.298 sum -0.920 8.927 -12.369 15.282 Atomic orbital electron populations 1.22717 0.81284 1.03131 0.99125 1.88113 1.19189 1.25678 1.95131 1.22429 0.90873 0.86260 1.00455 1.21160 0.95233 0.96137 0.92975 1.23157 0.76576 0.81950 0.87320 1.90574 1.38013 1.66693 1.46427 1.86586 1.73072 1.23914 1.40162 1.22895 0.97175 0.95046 0.80800 1.18772 0.93802 0.85677 0.97106 1.20514 0.94608 1.40234 0.96577 0.91833 1.25014 0.97384 0.94547 0.96667 1.69961 1.34639 1.44572 1.03060 0.86532 0.85133 0.77831 0.78555 1.19568 1.20994 1.21008 1.22786 0.98075 1.03280 0.96501 1.22773 1.04700 1.04161 0.91535 1.22358 1.02211 0.97259 0.92383 1.22567 1.00425 0.95849 0.97463 1.22366 0.99526 0.98972 0.95181 1.22242 0.99906 0.93263 1.00026 0.89240 0.94286 0.94759 0.93133 0.92269 0.89836 0.94458 0.92897 0.91725 0.89762 0.90267 0.91340 0.90964 0.89308 0.91384 0.91218 0.91387 0.91377 0.90948 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -6.09 8.88 -46.29 -0.41 -6.51 16 3 C 0.08 1.10 4.55 37.16 0.17 1.27 16 4 C -0.05 -0.82 0.70 -154.54 -0.11 -0.93 16 5 C 0.47 9.54 6.39 36.00 0.23 9.77 16 6 O -0.53 -11.88 14.93 -18.75 -0.28 -12.16 16 7 O -0.32 -7.43 9.17 -43.76 -0.40 -7.84 16 8 C 0.11 2.89 5.35 37.16 0.20 3.09 16 9 C 0.05 1.21 1.59 -155.66 -0.25 0.96 16 10 C -0.48 -13.35 8.83 -34.44 -0.30 -13.66 16 11 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 12 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 13 N -0.88 -25.44 12.40 55.43 0.69 -24.75 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.17 -4.00 9.88 -26.73 -0.26 -4.26 16 19 C -0.19 -4.37 9.85 -26.73 -0.26 -4.64 16 20 C -0.10 -1.41 5.69 -25.03 -0.14 -1.55 16 21 C -0.13 -1.26 6.91 -24.70 -0.17 -1.43 16 22 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 23 C -0.12 -1.48 6.05 -25.61 -0.15 -1.64 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 2.36 7.11 -51.93 -0.37 1.99 16 30 H 0.04 0.93 7.75 -51.93 -0.40 0.52 16 31 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 32 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 33 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 37 H 0.09 1.23 7.19 -51.93 -0.37 0.85 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 43 H 0.09 1.39 6.43 -51.93 -0.33 1.05 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -31.06 351.01 -7.67 -38.73 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.32 Total: 2.14 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.21 Total: -11.14 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.69 Total: -24.75 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.09 Total: -26.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.06 -7.67 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838809880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.982 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds