Wall clock time and date at job start Tue Mar 31 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00402 * 2 1 4 4 H 1.48492 * 109.46708 * 270.00025 * 3 2 1 5 5 H 1.48497 * 109.46767 * 29.99554 * 3 2 1 6 6 H 1.48497 * 109.47205 * 149.99918 * 3 2 1 7 7 C 1.37888 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99489 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99741 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00394 * 4.98216 * 11 10 9 13 13 N 1.34782 * 119.99971 * 184.98679 * 11 10 9 14 14 C 1.46928 * 120.62925 * 354.76182 * 13 11 10 15 15 C 1.53184 * 108.89692 * 233.52206 * 14 13 11 16 16 C 1.53078 * 109.29479 * 305.57893 * 15 14 13 17 17 C 1.53042 * 109.65463 * 61.15451 * 16 15 14 18 18 H 1.08998 * 109.49921 * 58.65509 * 17 16 15 19 19 O 1.42901 * 109.49109 * 178.74752 * 17 16 15 20 20 C 1.42900 * 113.99619 * 209.83558 * 19 17 16 21 21 C 1.53786 * 113.61620 * 249.13965 * 20 19 17 22 22 C 1.53958 * 87.01838 * 220.05204 * 21 20 19 23 23 C 1.53778 * 87.11425 * 25.36154 * 22 21 20 24 24 C 1.46917 * 120.63344 * 174.75040 * 13 11 10 25 25 H 0.96998 * 119.99616 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47219 * 60.00120 * 9 7 2 27 27 H 1.09001 * 109.47261 * 300.00187 * 9 7 2 28 28 H 0.96995 * 120.00077 * 0.02562 * 10 9 7 29 29 H 1.09007 * 109.58594 * 353.38776 * 14 13 11 30 30 H 1.09006 * 109.58195 * 113.65821 * 14 13 11 31 31 H 1.08997 * 109.49909 * 65.39169 * 15 14 13 32 32 H 1.09001 * 109.49532 * 185.48518 * 15 14 13 33 33 H 1.09003 * 109.34539 * 301.13037 * 16 15 14 34 34 H 1.08997 * 109.44905 * 181.24289 * 16 15 14 35 35 H 1.08994 * 112.85372 * 20.33614 * 20 19 17 36 36 H 1.09004 * 113.61096 * 334.56738 * 21 20 19 37 37 H 1.08989 * 113.61557 * 105.47037 * 21 20 19 38 38 H 1.09001 * 113.53456 * 270.80649 * 22 21 20 39 39 H 1.09000 * 113.66657 * 139.93865 * 22 21 20 40 40 H 1.08996 * 113.61331 * 220.09466 * 23 22 21 41 41 H 1.08997 * 113.61504 * 89.18755 * 23 22 21 42 42 H 1.08998 * 109.59125 * 246.19698 * 24 13 11 43 43 H 1.08999 * 109.58791 * 6.61964 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1143 -1.9015 0.0930 13 7 5.7749 -4.0882 -0.0981 14 6 4.8365 -5.2187 -0.0932 15 6 5.2617 -6.2117 0.9929 16 6 6.7244 -6.6061 0.7731 17 6 7.6132 -5.3644 0.8747 18 1 7.4857 -4.9049 1.8549 19 8 8.9803 -5.7409 0.6980 20 6 9.9076 -4.9069 1.3957 21 6 10.7692 -4.0335 0.4685 22 6 11.9489 -4.3395 1.4093 23 6 11.2052 -5.6289 1.7957 24 6 7.2132 -4.3645 -0.2147 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6801 0.8911 27 1 3.8753 -0.6805 -0.8888 28 1 3.3695 -3.3126 0.0021 29 1 3.8297 -4.8570 0.1162 30 1 4.8528 -5.7113 -1.0655 31 1 5.1557 -5.7465 1.9729 32 1 4.6314 -7.0995 0.9410 33 1 6.8337 -7.0510 -0.2160 34 1 7.0231 -7.3296 1.5316 35 1 9.4465 -4.3528 2.2132 36 1 10.8906 -4.4473 -0.5326 37 1 10.4764 -2.9837 0.4611 38 1 12.0466 -3.6290 2.2302 39 1 12.8895 -4.5174 0.8881 40 1 11.2638 -5.8649 2.8582 41 1 11.4459 -6.4795 1.1581 42 1 7.4253 -4.7890 -1.1960 43 1 7.7747 -3.4393 -0.0855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847361367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:14 Heat of formation + Delta-G solvation = -54.739866 kcal Electronic energy + Delta-G solvation = -22668.583804 eV Core-core repulsion = 19328.542895 eV Total energy + Delta-G solvation = -3340.040908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22709 -39.28122 -37.47487 -35.53850 -34.36639 -32.54883 -32.13130 -30.15353 -27.81857 -25.88633 -25.14094 -24.98849 -22.93497 -22.07925 -20.91084 -19.88132 -19.23373 -18.18090 -17.15765 -16.46053 -16.05873 -15.78453 -15.26830 -15.01126 -14.60750 -14.38477 -14.08816 -13.91322 -13.31450 -13.24071 -12.98913 -12.84157 -12.64550 -12.42162 -12.34864 -12.10367 -11.63250 -11.56418 -11.19678 -11.07858 -10.95663 -10.85012 -10.74272 -10.65430 -10.46738 -9.95715 -9.69909 -9.52045 -9.45240 -8.77385 -8.50788 -7.95710 -6.20559 -4.22366 2.96777 3.28185 3.35024 3.44102 3.55856 3.74295 4.34570 4.37153 4.39397 4.52139 4.64294 4.66593 4.72598 4.76218 4.92770 4.98562 5.09666 5.15173 5.16314 5.39066 5.47025 5.52527 5.55616 5.62496 5.69823 5.72809 5.75495 5.78675 5.83521 5.95067 6.02609 6.03362 6.16114 6.59665 6.78794 7.12266 7.18102 7.24994 7.39025 7.50708 8.25944 8.65896 8.79576 9.17768 9.40893 10.91417 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003676 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.827396 B = 7615.878870 C = 8571.642720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.699 3.301 12 O -0.601 6.601 13 N -0.634 5.634 14 C 0.109 3.891 15 C -0.132 4.132 16 C -0.114 4.114 17 C 0.076 3.924 18 H 0.064 0.936 19 O -0.365 6.365 20 C 0.061 3.939 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.136 4.136 24 C 0.114 3.886 25 H 0.267 0.733 26 H 0.024 0.976 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.132 -14.752 2.577 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.481 6.481 13 N -0.374 5.374 14 C -0.015 4.015 15 C -0.171 4.171 16 C -0.152 4.152 17 C 0.017 3.983 18 H 0.082 0.918 19 O -0.283 6.283 20 C 0.004 3.996 21 C -0.197 4.197 22 C -0.180 4.180 23 C -0.174 4.174 24 C -0.011 4.011 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.228 0.772 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.564 -14.060 2.516 23.423 hybrid contribution -0.138 0.721 0.111 0.742 sum 18.427 -13.339 2.627 22.899 Atomic orbital electron populations 1.69880 1.06205 1.27415 1.49558 1.24781 0.94781 0.99154 0.93876 0.86812 0.80624 0.83186 0.79066 1.19849 1.20922 1.18429 1.21081 0.88527 0.95167 1.53215 0.90349 1.19372 0.94849 0.77680 0.96634 1.45567 1.03700 1.11084 1.77268 1.16011 0.83671 0.82175 0.78082 1.90843 1.55452 1.42948 1.58836 1.47184 1.06363 1.04686 1.79212 1.21639 0.93345 0.87553 0.98958 1.21924 0.95792 0.99558 0.99782 1.21575 0.93775 0.96700 1.03112 1.22563 0.81760 0.95486 0.98471 0.91773 1.87930 1.14884 1.54022 1.71460 1.23855 0.88692 0.92407 0.94693 1.23538 0.96109 1.00623 0.99388 1.22687 0.97743 0.97705 0.99856 1.23201 0.94605 0.98033 1.01555 1.21794 0.80969 0.99915 0.98399 0.92272 0.95854 0.96437 0.77222 0.89691 0.91382 0.91229 0.89972 0.90951 0.91185 0.89528 0.89238 0.90976 0.90038 0.90849 0.91193 0.89254 0.91492 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.21 5.47 -17.81 -0.10 2.11 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.98 4.50 -5.19 -0.02 5.96 16 10 N -0.72 -15.29 5.46 -66.41 -0.36 -15.65 16 11 C 0.70 14.33 8.29 -86.92 -0.72 13.61 16 12 O -0.60 -14.50 15.77 5.30 0.08 -14.42 16 13 N -0.63 -9.87 2.97 -178.51 -0.53 -10.40 16 14 C 0.11 1.29 6.38 -3.71 -0.02 1.27 16 15 C -0.13 -1.28 6.09 -26.60 -0.16 -1.44 16 16 C -0.11 -1.12 5.53 -26.67 -0.15 -1.26 16 17 C 0.08 0.89 2.76 -26.61 -0.07 0.82 16 18 H 0.06 0.80 7.43 -51.93 -0.39 0.41 16 19 O -0.37 -4.25 10.00 -35.23 -0.35 -4.60 16 20 C 0.06 0.63 4.25 -25.91 -0.11 0.52 16 21 C -0.16 -1.54 7.93 -25.82 -0.20 -1.74 16 22 C -0.14 -1.12 8.09 -25.83 -0.21 -1.33 16 23 C -0.14 -1.14 7.91 -25.92 -0.21 -1.34 16 24 C 0.11 1.58 6.06 -3.72 -0.02 1.56 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 27 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.39 7.32 5.81 -40.82 -0.24 7.08 16 29 H 0.08 1.03 5.65 -51.92 -0.29 0.73 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.89 7.47 -51.93 -0.39 0.50 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.46 341.45 -9.34 -41.80 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.09 Total: 3.58 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.34 Total: 3.40 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.12 Total: -51.85 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.27 Total: -19.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.46 -9.34 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847361367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.945 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds