Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00402 * 2 1 4 4 H 1.48492 * 109.46708 * 270.00025 * 3 2 1 5 5 H 1.48497 * 109.46767 * 29.99554 * 3 2 1 6 6 H 1.48497 * 109.47205 * 149.99918 * 3 2 1 7 7 C 1.37888 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99489 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99741 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46760 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00394 * 4.98216 * 11 10 9 13 13 N 1.34782 * 119.99971 * 184.98679 * 11 10 9 14 14 C 1.46928 * 120.62925 * 354.76182 * 13 11 10 15 15 C 1.53184 * 108.89692 * 233.52206 * 14 13 11 16 16 C 1.53078 * 109.29479 * 305.57893 * 15 14 13 17 17 C 1.53042 * 109.65463 * 61.15451 * 16 15 14 18 18 H 1.08998 * 109.49921 * 58.65509 * 17 16 15 19 19 O 1.42901 * 109.49109 * 178.74752 * 17 16 15 20 20 C 1.42900 * 113.99619 * 209.83558 * 19 17 16 21 21 C 1.53786 * 113.61620 * 249.13965 * 20 19 17 22 22 C 1.53958 * 87.01838 * 220.05204 * 21 20 19 23 23 C 1.53778 * 87.11425 * 25.36154 * 22 21 20 24 24 C 1.46917 * 120.63344 * 174.75040 * 13 11 10 25 25 H 0.96998 * 119.99616 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47219 * 60.00120 * 9 7 2 27 27 H 1.09001 * 109.47261 * 300.00187 * 9 7 2 28 28 H 0.96995 * 120.00077 * 0.02562 * 10 9 7 29 29 H 1.09007 * 109.58594 * 353.38776 * 14 13 11 30 30 H 1.09006 * 109.58195 * 113.65821 * 14 13 11 31 31 H 1.08997 * 109.49909 * 65.39169 * 15 14 13 32 32 H 1.09001 * 109.49532 * 185.48518 * 15 14 13 33 33 H 1.09003 * 109.34539 * 301.13037 * 16 15 14 34 34 H 1.08997 * 109.44905 * 181.24289 * 16 15 14 35 35 H 1.08994 * 112.85372 * 20.33614 * 20 19 17 36 36 H 1.09004 * 113.61096 * 334.56738 * 21 20 19 37 37 H 1.08989 * 113.61557 * 105.47037 * 21 20 19 38 38 H 1.09001 * 113.53456 * 270.80649 * 22 21 20 39 39 H 1.09000 * 113.66657 * 139.93865 * 22 21 20 40 40 H 1.08996 * 113.61331 * 220.09466 * 23 22 21 41 41 H 1.08997 * 113.61504 * 89.18755 * 23 22 21 42 42 H 1.08998 * 109.59125 * 246.19698 * 24 13 11 43 43 H 1.08999 * 109.58791 * 6.61964 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1143 -1.9015 0.0930 13 7 5.7749 -4.0882 -0.0981 14 6 4.8365 -5.2187 -0.0932 15 6 5.2617 -6.2117 0.9929 16 6 6.7244 -6.6061 0.7731 17 6 7.6132 -5.3644 0.8747 18 1 7.4857 -4.9049 1.8549 19 8 8.9803 -5.7409 0.6980 20 6 9.9076 -4.9069 1.3957 21 6 10.7692 -4.0335 0.4685 22 6 11.9489 -4.3395 1.4093 23 6 11.2052 -5.6289 1.7957 24 6 7.2132 -4.3645 -0.2147 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6801 0.8911 27 1 3.8753 -0.6805 -0.8888 28 1 3.3695 -3.3126 0.0021 29 1 3.8297 -4.8570 0.1162 30 1 4.8528 -5.7113 -1.0655 31 1 5.1557 -5.7465 1.9729 32 1 4.6314 -7.0995 0.9410 33 1 6.8337 -7.0510 -0.2160 34 1 7.0231 -7.3296 1.5316 35 1 9.4465 -4.3528 2.2132 36 1 10.8906 -4.4473 -0.5326 37 1 10.4764 -2.9837 0.4611 38 1 12.0466 -3.6290 2.2302 39 1 12.8895 -4.5174 0.8881 40 1 11.2638 -5.8649 2.8582 41 1 11.4459 -6.4795 1.1581 42 1 7.4253 -4.7890 -1.1960 43 1 7.7747 -3.4393 -0.0855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847361367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -76.011280 kcal Electronic energy + Delta-G solvation = -22669.506201 eV Core-core repulsion = 19328.542895 eV Total energy + Delta-G solvation = -3340.963306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52039 -40.28238 -38.59703 -36.54567 -36.24881 -34.46278 -33.39084 -31.29625 -29.67650 -26.66856 -26.31891 -25.78848 -24.18123 -23.66614 -22.11674 -20.99384 -20.43747 -19.53804 -18.49236 -18.01841 -17.44168 -16.89946 -16.44409 -16.42755 -15.91138 -15.64039 -15.39848 -15.02501 -14.77414 -14.62328 -14.41882 -14.09589 -13.84972 -13.68728 -13.36252 -13.23399 -13.03618 -12.71634 -12.43830 -12.40175 -12.04673 -11.96821 -11.91866 -11.68024 -11.63338 -11.50260 -11.26867 -11.18841 -10.92260 -10.56763 -10.12799 -9.43661 -8.40361 -6.47122 1.32826 1.34704 1.48296 1.63216 2.10404 2.28379 2.65543 2.95152 3.09910 3.62922 3.66020 3.80719 3.82838 3.91135 3.94741 3.98170 4.05071 4.17410 4.39554 4.47785 4.57337 4.67545 4.73627 4.77896 4.81247 4.83948 4.91535 5.01196 5.02693 5.03224 5.03382 5.13547 5.22041 5.23339 5.27128 5.40380 5.50941 5.51284 5.88958 6.17717 6.29327 6.53919 7.05189 7.18140 7.57813 8.74296 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003676 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.827396 B = 7615.878870 C = 8571.642720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.721 5.721 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.624 5.624 14 C 0.099 3.901 15 C -0.124 4.124 16 C -0.108 4.108 17 C 0.083 3.917 18 H 0.054 0.946 19 O -0.369 6.369 20 C 0.048 3.952 21 C -0.165 4.165 22 C -0.134 4.134 23 C -0.128 4.128 24 C 0.113 3.887 25 H 0.273 0.727 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.404 0.596 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.305 -16.253 2.723 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.377 5.377 11 C 0.397 3.603 12 O -0.526 6.526 13 N -0.363 5.363 14 C -0.023 4.023 15 C -0.162 4.162 16 C -0.146 4.146 17 C 0.024 3.976 18 H 0.072 0.928 19 O -0.287 6.287 20 C -0.010 4.010 21 C -0.203 4.203 22 C -0.171 4.171 23 C -0.165 4.165 24 C -0.011 4.011 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.242 0.758 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.742 -15.636 2.660 25.323 hybrid contribution -0.492 1.099 0.045 1.205 sum 19.249 -14.537 2.705 24.273 Atomic orbital electron populations 1.69972 1.07595 1.28640 1.50623 1.25553 0.95529 1.02538 0.93540 0.85875 0.79221 0.79414 0.79492 1.18934 1.19637 1.18699 1.21239 0.89688 0.94636 1.52730 0.92190 1.18963 0.93202 0.79724 0.95422 1.45290 1.04513 1.10003 1.77848 1.16140 0.82882 0.83420 0.77856 1.90808 1.56254 1.44908 1.60616 1.47213 1.07710 1.03887 1.77511 1.21988 0.92302 0.86745 1.01221 1.21903 0.96285 0.99867 0.98157 1.21571 0.93075 0.95727 1.04202 1.22479 0.82479 0.95906 0.96777 0.92834 1.87926 1.14806 1.54144 1.71856 1.24071 0.89157 0.93021 0.94702 1.23563 0.97311 0.99688 0.99698 1.22686 0.97483 0.97488 0.99468 1.23167 0.92921 0.98070 1.02341 1.21907 0.79614 0.99506 1.00061 0.91781 0.97303 0.97374 0.75811 0.90051 0.89147 0.92190 0.86836 0.90008 0.89690 0.90040 0.89483 0.92387 0.89401 0.89561 0.89988 0.88981 0.90286 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 2 C 0.03 1.65 5.47 84.66 0.46 2.11 16 3 Si 0.94 44.58 27.47 68.60 1.88 46.46 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 7 C -0.55 -30.46 9.83 25.60 0.25 -30.21 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 9 C 0.25 12.77 4.50 85.63 0.39 13.16 16 10 N -0.72 -30.69 5.46 -482.30 -2.63 -33.32 16 11 C 0.70 28.71 8.29 179.05 1.49 30.19 16 12 O -0.64 -31.74 15.77 -3.97 -0.06 -31.80 16 13 N -0.62 -19.02 2.97 -836.93 -2.49 -21.50 16 14 C 0.10 2.16 6.38 86.36 0.55 2.71 16 15 C -0.12 -2.04 6.09 30.68 0.19 -1.85 16 16 C -0.11 -1.81 5.53 30.63 0.17 -1.64 16 17 C 0.08 1.84 2.76 30.67 0.08 1.92 16 18 H 0.05 1.31 7.43 -2.39 -0.02 1.29 16 19 O -0.37 -8.14 10.00 -148.98 -1.49 -9.63 16 20 C 0.05 0.95 4.25 31.12 0.13 1.08 16 21 C -0.16 -3.16 7.93 31.18 0.25 -2.91 16 22 C -0.13 -1.91 8.09 31.18 0.25 -1.66 16 23 C -0.13 -1.90 7.91 31.12 0.25 -1.65 16 24 C 0.11 3.10 6.06 86.36 0.52 3.62 16 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 27 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 28 H 0.40 15.03 5.81 -92.71 -0.54 14.49 16 29 H 0.08 1.84 5.65 -2.38 -0.01 1.83 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.67 7.47 -2.39 -0.02 1.66 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.18 7.00 -2.39 -0.02 2.16 16 Total: -1.00 -70.12 341.45 0.89 -69.23 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.40 Total: 20.94 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 4.98 Total: 14.89 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.82 Total: -110.09 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.55 Total: -41.43 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -70.12 0.89 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847361367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.779 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds