Wall clock time and date at job start Tue Mar 31 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.77695 * 2 1 4 4 C 1.53231 * 109.62611 * 120.46616 * 2 1 3 5 5 C 1.52964 * 109.40015 * 65.09464 * 4 2 1 6 6 H 1.09010 * 109.41191 * 303.55911 * 5 4 2 7 7 O 1.45197 * 109.41512 * 183.70518 * 5 4 2 8 8 C 1.34227 * 117.00378 * 89.99506 * 7 5 4 9 9 O 1.20829 * 119.99623 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00028 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.47169 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47411 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99503 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00239 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00258 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99712 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47000 * 269.99939 * 16 14 12 18 18 H 1.48496 * 109.47259 * 30.00470 * 16 14 12 19 19 H 1.48503 * 109.46703 * 150.00203 * 16 14 12 20 20 C 1.52958 * 109.81965 * 63.59610 * 5 4 2 21 21 C 1.53233 * 109.40447 * 296.40401 * 20 5 4 22 22 C 1.53007 * 109.62395 * 294.91410 * 21 20 5 23 23 C 1.52996 * 109.62827 * 174.34281 * 21 20 5 24 24 C 1.51260 * 109.62915 * 239.51824 * 2 1 3 25 25 O 1.20769 * 120.85011 * 111.65248 * 24 2 1 26 26 H 1.08996 * 109.47674 * 310.90736 * 1 2 3 27 27 H 1.08997 * 109.46850 * 70.91289 * 1 2 3 28 28 H 1.08999 * 109.46900 * 190.90762 * 1 2 3 29 29 H 1.08994 * 109.48743 * 305.11553 * 4 2 1 30 30 H 1.08997 * 109.49329 * 185.07133 * 4 2 1 31 31 H 1.09001 * 109.47321 * 60.00412 * 10 8 7 32 32 H 1.09001 * 109.47026 * 299.99831 * 10 8 7 33 33 H 1.08991 * 109.47422 * 59.99555 * 11 10 8 34 34 H 1.09006 * 109.46919 * 300.00120 * 11 10 8 35 35 H 0.97007 * 120.00151 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.48251 * 56.37526 * 20 5 4 37 37 H 1.09003 * 109.48512 * 176.42347 * 20 5 4 38 38 H 1.08995 * 109.46947 * 163.72266 * 22 21 20 39 39 H 1.09000 * 109.46848 * 283.71696 * 22 21 20 40 40 H 1.08999 * 109.47280 * 43.71906 * 22 21 20 41 41 H 1.08997 * 109.47106 * 300.95222 * 23 21 20 42 42 H 1.08997 * 109.47400 * 60.94972 * 23 21 20 43 43 H 1.08995 * 109.47228 * 180.95167 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0447 -0.7318 1.2440 5 6 1.6431 -2.2058 1.1689 6 1 0.5611 -2.2814 1.0600 7 8 2.0537 -2.8807 2.3872 8 6 1.1719 -2.9021 3.3989 9 8 0.0924 -2.3748 3.2706 10 6 1.5283 -3.5837 4.6948 11 6 0.3574 -3.4648 5.6725 12 6 0.7140 -4.1460 6.9686 13 1 1.6791 -4.6169 7.0834 14 6 -0.1917 -4.1679 8.0079 15 7 0.1197 -4.7618 9.1391 16 14 -1.8607 -3.3526 7.8095 17 1 -1.7738 -1.9351 8.2434 18 1 -2.2732 -3.4096 6.3841 19 1 -2.8618 -4.0650 8.6434 20 6 2.3210 -2.8675 -0.0320 21 6 1.8167 -2.2160 -1.3240 22 6 0.3239 -2.5040 -1.4961 23 6 2.5928 -2.7748 -2.5183 24 6 2.0382 -0.7227 -1.2278 25 8 2.6065 -0.1229 -2.1086 26 1 -0.3634 0.6729 0.7766 27 1 -0.3633 0.3360 -0.9711 28 1 -0.3633 -1.0091 0.1945 29 1 1.6101 -0.2816 2.1365 30 1 3.1309 -0.6529 1.2891 31 1 2.4104 -3.1090 5.1244 32 1 1.7379 -4.6366 4.5058 33 1 -0.5245 -3.9397 5.2427 34 1 0.1474 -2.4120 5.8615 35 1 -0.5175 -4.7769 9.8704 36 1 3.4006 -2.7379 0.0430 37 1 2.0821 -3.9310 -0.0440 38 1 -0.0952 -1.8206 -2.2346 39 1 0.1887 -3.5315 -1.8340 40 1 -0.1853 -2.3651 -0.5424 41 1 3.6561 -2.5744 -2.3865 42 1 2.4315 -3.8506 -2.5852 43 1 2.2439 -2.2974 -3.4339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847940799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:08 Heat of formation + Delta-G solvation = -148.708661 kcal Electronic energy + Delta-G solvation = -22997.769681 eV Core-core repulsion = 19621.361229 eV Total energy + Delta-G solvation = -3376.408452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32247 -39.95062 -37.42813 -35.86360 -34.59212 -33.65299 -31.53069 -30.57609 -27.90087 -26.63797 -26.58135 -25.62395 -22.69488 -21.92920 -20.99270 -19.84711 -18.26987 -17.66909 -17.01129 -16.39954 -16.21562 -15.57916 -15.35012 -15.22485 -14.74444 -14.24993 -14.15305 -13.79206 -13.46806 -13.13434 -12.94468 -12.77353 -12.73712 -12.55552 -12.45176 -12.39747 -12.01136 -11.85236 -11.50540 -11.45374 -11.29733 -11.12182 -11.04539 -10.74811 -10.41033 -10.28999 -10.19640 -9.95640 -9.72614 -9.51178 -9.29035 -8.58687 -6.09958 -4.10081 1.61035 2.62349 2.87127 3.31555 3.38804 3.46977 3.58768 4.16459 4.22655 4.39614 4.43241 4.58290 4.62796 4.78331 4.80130 4.86066 4.91757 5.19639 5.24741 5.25023 5.33552 5.40820 5.43253 5.51220 5.51692 5.57502 5.58275 5.67582 5.72415 5.83024 5.86160 5.91747 5.95657 5.99813 6.06782 6.45476 6.74844 7.14485 7.19824 7.27291 7.67683 8.15165 8.43956 8.92407 9.51686 11.02635 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.003533 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.037571 B = 7922.924477 C = 8198.394158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.129 4.129 5 C 0.076 3.924 6 H 0.095 0.905 7 O -0.355 6.355 8 C 0.457 3.543 9 O -0.510 6.510 10 C -0.096 4.096 11 C -0.001 4.001 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.071 3.929 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.262 1.262 19 H -0.287 1.287 20 C -0.103 4.103 21 C -0.106 4.106 22 C -0.150 4.150 23 C -0.133 4.133 24 C 0.375 3.625 25 O -0.449 6.449 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 5.925 -22.340 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 H 0.118 0.882 4 C -0.166 4.166 5 C 0.022 3.978 6 H 0.113 0.887 7 O -0.273 6.273 8 C 0.301 3.699 9 O -0.397 6.397 10 C -0.134 4.134 11 C -0.039 4.039 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.186 1.186 19 H -0.213 1.213 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.207 4.207 23 C -0.190 4.190 24 C 0.249 3.751 25 O -0.321 6.321 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.981 6.375 -22.706 23.771 hybrid contribution -0.939 0.498 0.130 1.071 sum 2.042 6.873 -22.576 23.687 Atomic orbital electron populations 1.22066 0.92252 1.04064 1.02679 1.21873 0.98445 1.00886 0.94002 0.88163 1.21978 1.02342 0.94429 0.97876 1.22752 1.01219 0.91152 0.82724 0.88719 1.86629 1.46787 1.70672 1.23206 1.24781 0.82165 0.77172 0.85778 1.90603 1.23994 1.43308 1.81749 1.21554 1.03400 1.00839 0.87602 1.19476 0.92793 0.97805 0.93817 1.21030 1.03454 1.36144 0.95940 0.90658 1.24955 0.98435 0.94747 0.94957 1.69901 1.36136 1.43728 1.04074 0.86805 0.84130 0.79757 0.78904 1.20169 1.18605 1.21309 1.21670 1.01347 1.00929 0.90148 1.21273 0.98431 0.94046 0.96998 1.22151 0.92495 1.02880 1.03147 1.21712 1.00029 1.00905 0.96375 1.24888 0.73768 0.90672 0.85753 1.90381 1.31824 1.70233 1.39648 0.90950 0.92128 0.90523 0.89635 0.90331 0.88326 0.88296 0.95611 0.96076 0.92575 0.90116 0.89386 0.91924 0.90955 0.90565 0.92041 0.91548 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.22 37.16 0.31 -1.06 16 2 C -0.13 -1.28 3.18 -91.38 -0.29 -1.57 16 3 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 4 C -0.13 -1.38 5.05 -26.63 -0.13 -1.52 16 5 C 0.08 0.90 2.10 -26.77 -0.06 0.84 16 6 H 0.10 1.16 3.88 -51.92 -0.20 0.96 16 7 O -0.36 -5.15 9.87 -39.25 -0.39 -5.54 16 8 C 0.46 7.95 7.93 36.00 0.29 8.24 16 9 O -0.51 -10.00 15.20 -18.75 -0.28 -10.28 16 10 C -0.10 -1.80 5.75 -27.88 -0.16 -1.96 16 11 C 0.00 -0.03 3.33 -27.88 -0.09 -0.13 16 12 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 13 H 0.08 2.18 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 16 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 C -0.10 -0.97 4.36 -26.63 -0.12 -1.08 16 21 C -0.11 -0.93 0.77 -155.26 -0.12 -1.05 16 22 C -0.15 -1.15 7.48 37.16 0.28 -0.87 16 23 C -0.13 -1.06 7.84 37.16 0.29 -0.77 16 24 C 0.37 3.90 5.42 -28.48 -0.15 3.74 16 25 O -0.45 -5.84 16.86 5.99 0.10 -5.74 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.48 8.11 -51.93 -0.42 0.05 16 28 H 0.08 0.71 3.72 -51.93 -0.19 0.51 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 33 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 34 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.45 8.05 -51.93 -0.42 0.03 16 39 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.08 0.63 3.86 -51.93 -0.20 0.42 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -31.94 336.78 -6.63 -38.57 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.85 Total: -2.48 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.39 Total: -10.19 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.57 Total: -21.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.94 -6.63 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847940799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.140 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds