Wall clock time and date at job start Tue Mar 31 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99821 * 2 1 4 4 H 1.48509 * 109.46907 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47351 * 299.99527 * 3 2 1 6 6 H 1.48495 * 109.47214 * 60.00024 * 3 2 1 7 7 C 1.37872 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00150 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52052 * 299.91572 * 9 7 2 11 11 C 1.53045 * 109.49708 * 179.84080 * 9 7 2 12 12 C 1.53034 * 109.53489 * 178.68480 * 11 9 7 13 13 C 1.52760 * 109.38585 * 61.23637 * 12 11 9 14 14 N 1.46918 * 109.00850 * 305.58299 * 13 12 11 15 15 C 1.34775 * 120.63657 * 233.58299 * 14 13 12 16 16 O 1.21585 * 120.00450 * 184.74233 * 15 14 13 17 17 N 1.34773 * 119.99682 * 4.74132 * 15 14 13 18 18 O 1.41597 * 120.00110 * 174.74317 * 17 15 14 19 19 C 1.42906 * 114.00250 * 180.27489 * 18 17 15 20 20 C 1.54265 * 110.03100 * 272.91040 * 19 18 17 21 21 C 1.54968 * 104.15910 * 217.13398 * 20 19 18 22 22 C 1.54893 * 102.77620 * 37.88813 * 21 20 19 23 23 C 1.53873 * 110.03175 * 155.69278 * 19 18 17 24 24 C 1.46933 * 118.73321 * 53.31535 * 14 13 12 25 25 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.45732 * 298.70067 * 11 9 7 27 27 H 1.08999 * 109.46321 * 58.65722 * 11 9 7 28 28 H 1.09005 * 109.49664 * 181.31659 * 12 11 9 29 29 H 1.08997 * 109.49709 * 301.37510 * 12 11 9 30 30 H 1.09004 * 109.50701 * 185.70434 * 13 12 11 31 31 H 1.08993 * 109.43240 * 65.42508 * 13 12 11 32 32 H 0.97001 * 120.00132 * 355.02031 * 17 15 14 33 33 H 1.09003 * 110.01223 * 34.30309 * 19 18 17 34 34 H 1.08992 * 110.49023 * 335.78013 * 20 19 18 35 35 H 1.09003 * 110.48689 * 98.42823 * 20 19 18 36 36 H 1.08999 * 110.72322 * 279.57892 * 21 20 19 37 37 H 1.08999 * 110.76610 * 156.22451 * 21 20 19 38 38 H 1.08998 * 110.49023 * 203.40604 * 22 21 20 39 39 H 1.08996 * 110.48514 * 80.76174 * 22 21 20 40 40 H 1.08997 * 110.02981 * 238.57246 * 23 19 18 41 41 H 1.09000 * 110.03210 * 359.97438 * 23 19 18 42 42 H 1.08997 * 109.59081 * 66.42746 * 24 14 13 43 43 H 1.09005 * 109.58507 * 186.71241 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5582 0.8907 11 6 2.2450 -3.6629 -0.0028 12 6 1.4811 -4.9885 0.0303 13 6 0.6027 -5.0987 -1.2147 14 7 -0.2556 -3.9095 -1.3016 15 6 -1.5922 -4.0343 -1.4206 16 8 -2.2835 -3.0466 -1.5782 17 7 -2.1626 -5.2541 -1.3648 18 8 -3.5732 -5.3774 -1.3778 19 6 -4.0395 -6.7264 -1.3076 20 6 -4.1218 -7.3314 -2.7242 21 6 -5.3904 -8.2206 -2.6835 22 6 -6.3653 -7.3869 -1.8154 23 6 -5.4651 -6.7619 -0.7297 24 6 0.3706 -2.5812 -1.2503 25 1 -0.4850 0.8400 -0.0004 26 1 2.8543 -3.6174 -0.9055 27 1 2.8892 -3.5929 0.8737 28 1 2.1898 -5.8164 0.0515 29 1 0.8532 -5.0244 0.9205 30 1 -0.0174 -5.9925 -1.1446 31 1 1.2350 -5.1587 -2.1004 32 1 -1.6070 -6.0474 -1.3117 33 1 -3.3697 -7.3207 -0.6860 34 1 -4.2320 -6.5439 -3.4696 35 1 -3.2386 -7.9350 -2.9332 36 1 -5.1749 -9.1786 -2.2105 37 1 -5.7931 -8.3654 -3.6860 38 1 -7.1186 -8.0311 -1.3619 39 1 -6.8381 -6.6081 -2.4136 40 1 -5.4874 -7.3741 0.1718 41 1 -5.8011 -5.7502 -0.5024 42 1 0.9836 -2.4316 -2.1391 43 1 -0.4026 -1.8142 -1.2064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852240980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:51 Heat of formation + Delta-G solvation = -31.375887 kcal Electronic energy + Delta-G solvation = -22914.698575 eV Core-core repulsion = 19575.670805 eV Total energy + Delta-G solvation = -3339.027770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65893 -38.72435 -36.78269 -35.57064 -33.48649 -32.00834 -30.98874 -29.62937 -28.97611 -27.57370 -25.05662 -24.31283 -21.84140 -21.02233 -20.81145 -20.27953 -18.75224 -18.19259 -17.27380 -16.15687 -15.72727 -15.49502 -15.04333 -14.71576 -14.34176 -13.87625 -13.73499 -13.59648 -13.47109 -13.13025 -12.61794 -12.49842 -12.17291 -12.10710 -11.91873 -11.40377 -11.36643 -11.10115 -10.98647 -10.90951 -10.88304 -10.61325 -10.47063 -10.39482 -10.21327 -9.88056 -9.41983 -9.09583 -8.94084 -8.52730 -8.39993 -7.67098 -5.95885 -4.05214 2.05541 3.33262 3.41500 3.44245 3.87744 4.09414 4.29256 4.31236 4.44067 4.47687 4.76050 4.99339 5.17584 5.20354 5.22461 5.33925 5.37114 5.39609 5.47045 5.58524 5.60171 5.64197 5.78171 5.92300 5.93810 5.97464 6.06738 6.13082 6.30459 6.52861 6.63640 6.77243 6.97991 7.01211 7.24219 7.32628 7.48087 7.75295 7.93758 8.07484 8.42484 8.52206 8.98731 9.28814 9.60500 11.09239 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.003737 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.084161 B = 7491.033768 C = 8144.883770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.115 3.885 14 N -0.615 5.615 15 C 0.716 3.284 16 O -0.565 6.565 17 N -0.624 5.624 18 O -0.125 6.125 19 C 0.056 3.944 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.117 4.117 24 C 0.132 3.868 25 H 0.263 0.737 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 -18.774 -3.257 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.173 4.173 13 C -0.009 4.009 14 N -0.356 5.356 15 C 0.418 3.582 16 O -0.439 6.439 17 N -0.334 5.334 18 O -0.127 6.127 19 C -0.003 4.003 20 C -0.187 4.187 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.156 4.156 24 C 0.012 3.988 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.996 -17.714 -3.381 19.343 hybrid contribution 0.723 0.091 0.073 0.733 sum -6.273 -17.623 -3.309 18.996 Atomic orbital electron populations 1.69905 1.05713 1.26796 1.49121 1.25072 0.94878 0.99298 0.94848 0.86535 0.79986 0.83838 0.77628 1.19821 1.20953 1.21050 1.21097 0.92910 0.90040 1.51930 0.92270 1.19013 0.92610 0.92296 0.94158 0.95243 1.21613 0.98533 0.93935 1.00642 1.21889 0.98632 0.99328 0.97454 1.21445 0.93414 0.87080 0.98970 1.47746 1.02278 1.09137 1.76412 1.15444 0.82450 0.81600 0.78666 1.90940 1.61201 1.36033 1.55754 1.46642 0.94480 1.07977 1.84269 1.90618 1.01085 1.24291 1.96722 1.23296 0.96489 0.84105 0.96433 1.22984 0.98423 0.99743 0.97561 1.22451 0.95280 0.98099 1.00228 1.22351 0.97497 0.99249 0.96953 1.22146 0.92140 1.02871 0.98422 1.22275 0.98253 0.79968 0.98344 0.92640 0.93088 0.92962 0.92192 0.92117 0.92605 0.91764 0.76229 0.90735 0.90052 0.91396 0.91381 0.91217 0.91240 0.91098 0.90424 0.89818 0.93936 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 11.39 55.43 0.63 -25.32 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.11 8.56 -34.44 -0.29 -14.40 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 12 C -0.13 -2.10 6.06 -26.84 -0.16 -2.26 16 13 C 0.12 1.75 6.40 -3.94 -0.03 1.72 16 14 N -0.61 -12.65 2.98 -178.77 -0.53 -13.18 16 15 C 0.72 15.74 8.44 -86.92 -0.73 15.00 16 16 O -0.56 -15.42 16.19 -12.79 -0.21 -15.62 16 17 N -0.62 -10.57 6.29 27.63 0.17 -10.40 16 18 O -0.12 -2.10 10.67 -29.55 -0.32 -2.41 16 19 C 0.06 0.63 3.53 -25.61 -0.09 0.54 16 20 C -0.15 -1.45 6.57 -25.03 -0.16 -1.61 16 21 C -0.12 -0.94 6.91 -24.69 -0.17 -1.11 16 22 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 23 C -0.12 -1.15 6.61 -25.61 -0.17 -1.32 16 24 C 0.13 3.23 5.39 -3.71 -0.02 3.21 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.66 5.57 -51.93 -0.29 0.37 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.40 5.13 5.89 -40.82 -0.24 4.88 16 33 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 3.59 5.16 -51.93 -0.27 3.32 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -33.46 338.84 -9.68 -43.14 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.08 Total: 3.63 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.44 Total: -1.29 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.27 Total: -48.90 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.52 Total: -18.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.46 -9.68 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852240980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.763 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds