Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.32930 * 2 1 4 4 O 1.44425 * 110.46270 * 122.31738 * 2 1 3 5 5 C 1.44429 * 105.27123 * 159.38869 * 4 2 1 6 6 H 1.09010 * 110.36825 * 78.32021 * 5 4 2 7 7 C 1.52997 * 110.46501 * 200.60489 * 5 4 2 8 8 C 1.54473 * 104.80407 * 319.49059 * 5 4 2 9 9 H 1.08999 * 110.51874 * 142.62640 * 8 5 4 10 10 C 1.53004 * 110.51005 * 265.33134 * 8 5 4 11 11 C 1.54479 * 110.36890 * 237.75451 * 2 1 3 12 12 H 1.09001 * 110.51130 * 335.71779 * 11 2 1 13 13 C 1.50698 * 110.51078 * 98.30034 * 11 2 1 14 14 O 1.20821 * 119.99815 * 114.95250 * 13 11 2 15 15 O 1.34224 * 120.00008 * 294.94434 * 13 11 2 16 16 C 1.45201 * 117.00335 * 180.95876 * 15 13 11 17 17 C 1.52999 * 109.47314 * 175.40480 * 16 15 13 18 18 C 1.50705 * 115.54508 * 282.38908 * 17 16 15 19 19 H 1.08005 * 119.99551 * 143.72080 * 18 17 16 20 20 C 1.37871 * 120.00457 * 323.72149 * 18 17 16 21 21 N 1.31522 * 119.99889 * 335.71936 * 20 18 17 22 22 Si 1.86798 * 120.00382 * 155.72129 * 20 18 17 23 23 H 1.48504 * 109.46772 * 89.99784 * 22 20 18 24 24 H 1.48500 * 109.47321 * 209.99818 * 22 20 18 25 25 H 1.48499 * 109.46932 * 330.00145 * 22 20 18 26 26 C 1.52993 * 117.49904 * 136.68374 * 17 16 15 27 27 C 1.52996 * 60.00160 * 252.50756 * 26 17 16 28 28 H 1.08998 * 109.47014 * 179.72664 * 1 2 3 29 29 H 1.09003 * 109.47088 * 299.73169 * 1 2 3 30 30 H 1.09002 * 109.46791 * 59.72594 * 1 2 3 31 31 H 1.09004 * 109.47033 * 175.43922 * 7 5 4 32 32 H 1.08999 * 109.47424 * 295.43827 * 7 5 4 33 33 H 1.08999 * 109.46871 * 55.44290 * 7 5 4 34 34 H 1.08997 * 109.47699 * 174.64066 * 10 8 5 35 35 H 1.08995 * 109.47358 * 294.64487 * 10 8 5 36 36 H 1.09006 * 109.47113 * 54.64209 * 10 8 5 37 37 H 1.09000 * 109.46549 * 295.40478 * 16 15 13 38 38 H 1.09002 * 109.46652 * 55.40101 * 16 15 13 39 39 H 0.96997 * 120.00255 * 185.02723 * 21 20 18 40 40 H 1.09000 * 117.50193 * 359.97438 * 26 17 16 41 41 H 1.09004 * 117.50010 * 145.02085 * 26 17 16 42 42 H 1.09004 * 117.50257 * 252.51204 * 27 26 17 43 43 H 1.08998 * 117.51695 * 107.47517 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7234 1.1435 5 6 3.3898 -1.0847 0.7972 6 1 4.0538 -0.2288 0.9196 7 6 3.8678 -2.2557 1.6580 8 6 3.3194 -1.5026 -0.6882 9 1 4.2115 -1.1727 -1.2206 10 6 3.1500 -3.0183 -0.8113 11 6 2.0677 -0.7727 -1.2248 12 1 1.3283 -1.4916 -1.5776 13 6 2.4425 0.1823 -2.3287 14 8 3.5958 0.2832 -2.6745 15 8 1.4952 0.9206 -2.9278 16 6 1.9254 1.8033 -3.9975 17 6 0.7031 2.4710 -4.6305 18 6 -0.0888 1.6098 -5.5805 19 1 -1.1647 1.6964 -5.6188 20 6 0.5601 0.7115 -6.4007 21 7 1.8200 0.9070 -6.7235 22 14 -0.3501 -0.7834 -7.0537 23 1 -0.9927 -0.4448 -8.3489 24 1 0.6096 -1.8989 -7.2539 25 1 -1.3906 -1.1948 -6.0774 26 6 0.7970 3.9659 -4.9426 27 6 -0.0706 3.4802 -3.7797 28 1 -0.3633 -1.0276 -0.0049 29 1 -0.3633 0.5097 0.8924 30 1 -0.3633 0.5181 -0.8875 31 1 4.8593 -2.5673 1.3294 32 1 3.9120 -1.9451 2.7019 33 1 3.1727 -3.0891 1.5561 34 1 3.0070 -3.2842 -1.8586 35 1 4.0411 -3.5157 -0.4286 36 1 2.2811 -3.3348 -0.2342 37 1 2.5884 2.5680 -3.5928 38 1 2.4564 1.2254 -4.7539 39 1 2.2555 0.3163 -7.3578 40 1 1.7295 4.4738 -4.6964 41 1 0.2861 4.3268 -5.8352 42 1 -1.1524 3.5215 -3.9073 43 1 0.2911 3.6681 -2.7688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860134185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -116.398787 kcal Electronic energy + Delta-G solvation = -23564.739217 eV Core-core repulsion = 20189.731826 eV Total energy + Delta-G solvation = -3375.007391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67199 -39.00402 -36.80580 -35.23204 -33.85870 -32.82562 -32.28326 -29.06324 -27.86668 -26.50375 -25.39641 -23.94858 -22.03881 -21.26600 -20.47003 -19.54703 -19.24258 -17.57651 -16.71937 -16.21130 -15.88395 -15.29821 -15.17878 -14.85368 -14.58826 -14.04380 -13.76132 -13.40973 -13.11085 -12.63906 -12.48540 -12.43321 -12.12390 -11.90246 -11.85253 -11.82162 -11.66927 -11.60442 -11.01437 -10.92984 -10.77955 -10.66930 -10.61959 -10.52414 -10.34929 -9.95587 -9.81482 -9.73558 -9.41711 -9.16226 -8.78652 -8.11105 -6.21378 -4.12605 2.72032 3.21572 3.23503 3.31272 3.36969 3.82743 4.30773 4.35644 4.56693 4.82083 4.86096 4.93700 5.04115 5.20024 5.29461 5.33769 5.39859 5.50509 5.53324 5.58174 5.74421 5.77432 5.82001 5.92680 5.94270 5.96804 6.05229 6.13147 6.19077 6.23154 6.31780 6.36468 6.59654 6.63377 6.72185 6.83791 6.92659 7.24285 7.32288 7.41963 7.83003 8.30961 8.42789 8.78069 9.41703 10.83638 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.005382 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.770015 B = 5201.323043 C = 5759.045522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.090 3.910 3 H 0.072 0.928 4 O -0.365 6.365 5 C 0.074 3.926 6 H 0.069 0.931 7 C -0.146 4.146 8 C -0.118 4.118 9 H 0.108 0.892 10 C -0.141 4.141 11 C -0.113 4.113 12 H 0.119 0.881 13 C 0.462 3.538 14 O -0.516 6.516 15 O -0.338 6.338 16 C 0.099 3.901 17 C 0.049 3.951 18 C -0.495 4.495 19 H 0.066 0.934 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.884 3.116 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.191 4.191 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.115 0.885 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -5.173 13.507 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.090 0.910 4 O -0.285 6.285 5 C 0.016 3.984 6 H 0.087 0.913 7 C -0.203 4.203 8 C -0.137 4.137 9 H 0.126 0.874 10 C -0.198 4.198 11 C -0.133 4.133 12 H 0.137 0.863 13 C 0.305 3.695 14 O -0.406 6.406 15 O -0.253 6.253 16 C 0.026 3.974 17 C 0.048 3.952 18 C -0.531 4.531 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.506 5.506 22 Si 0.711 3.289 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.229 4.229 27 C -0.238 4.238 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.319 -5.276 13.502 14.680 hybrid contribution -0.150 -0.510 -0.812 0.971 sum 2.169 -5.786 12.690 14.114 Atomic orbital electron populations 1.21855 0.91857 1.03191 1.03516 1.22777 0.96172 0.94903 0.82932 0.91032 1.89132 1.26924 1.74614 1.37821 1.23013 0.84795 0.97374 0.93213 0.91296 1.21867 1.01332 0.97581 0.99485 1.22604 0.98512 0.96528 0.96047 0.87420 1.21867 1.02086 0.93726 1.02130 1.22534 1.00064 0.96951 0.93717 0.86325 1.23062 0.84269 0.79925 0.82259 1.90587 1.21150 1.65555 1.63332 1.86449 1.39485 1.51419 1.47957 1.23047 0.97118 0.91160 0.86063 1.18827 0.93537 0.87106 0.95691 1.20395 0.92889 1.19244 1.20586 0.91603 1.24973 0.94811 0.97762 0.95440 1.69923 1.12218 1.37288 1.31135 0.86710 0.80051 0.83054 0.79119 1.20479 1.20954 1.19359 1.22989 0.99845 1.01335 0.98699 1.22823 0.97621 1.09171 0.94166 0.91728 0.91732 0.89463 0.91083 0.92150 0.91244 0.92290 0.91828 0.92035 0.94643 0.86704 0.92431 0.91608 0.89724 0.90274 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.53 37.16 0.35 -1.53 16 2 C 0.09 1.27 3.46 -25.95 -0.09 1.18 16 3 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 4 O -0.37 -5.04 11.04 -35.23 -0.39 -5.43 16 5 C 0.07 0.90 3.83 -25.96 -0.10 0.80 16 6 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 7 C -0.15 -1.38 8.42 37.16 0.31 -1.06 16 8 C -0.12 -1.59 3.22 -89.05 -0.29 -1.88 16 9 H 0.11 1.62 6.52 -51.93 -0.34 1.28 16 10 C -0.14 -1.58 7.74 37.16 0.29 -1.29 16 11 C -0.11 -1.74 2.80 -90.20 -0.25 -2.00 16 12 H 0.12 1.74 7.46 -51.93 -0.39 1.35 16 13 C 0.46 9.20 7.14 36.00 0.26 9.46 16 14 O -0.52 -11.43 15.00 -18.75 -0.28 -11.71 16 15 O -0.34 -7.49 10.22 -39.24 -0.40 -7.89 16 16 C 0.10 2.40 5.13 37.16 0.19 2.59 16 17 C 0.05 1.21 1.97 -155.66 -0.31 0.90 16 18 C -0.49 -13.30 8.95 -34.44 -0.31 -13.61 16 19 H 0.07 1.76 7.93 -52.48 -0.42 1.34 16 20 C 0.07 2.00 4.99 -17.82 -0.09 1.91 16 21 N -0.87 -24.22 11.31 55.43 0.63 -23.59 16 22 Si 0.88 20.64 29.61 -169.99 -5.03 15.60 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.19 -4.27 9.88 -26.74 -0.26 -4.54 16 27 C -0.20 -4.28 9.95 -26.73 -0.27 -4.55 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 0.57 7.78 -51.93 -0.40 0.17 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.59 7.05 -51.93 -0.37 0.23 16 36 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.04 0.82 7.98 -51.93 -0.41 0.41 16 38 H 0.12 3.14 5.51 -51.93 -0.29 2.86 16 39 H 0.27 7.05 8.32 -40.82 -0.34 6.72 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -29.11 347.33 -7.91 -37.02 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.11 Total: 4.36 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.56 Total: -13.60 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.63 Total: -23.59 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.07 Total: -25.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.11 -7.91 -37.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860134185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.376 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds