Wall clock time and date at job start Tue Mar 31 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.86645 * 2 1 4 4 O 1.43748 * 109.87814 * 121.00310 * 2 1 3 5 5 C 1.44382 * 106.97360 * 145.93966 * 4 2 1 6 6 H 1.08999 * 110.61839 * 78.44059 * 5 4 2 7 7 C 1.52994 * 110.61565 * 201.28033 * 5 4 2 8 8 C 1.54999 * 103.49027 * 319.93920 * 5 4 2 9 9 H 1.08995 * 110.90395 * 278.82429 * 8 5 4 10 10 C 1.53004 * 110.90390 * 155.25441 * 8 5 4 11 11 C 1.54100 * 109.88248 * 238.99179 * 2 1 3 12 12 H 1.08992 * 110.49105 * 119.86653 * 11 2 1 13 13 C 1.50708 * 110.48496 * 357.22005 * 11 2 1 14 14 O 1.20828 * 120.00090 * 268.72471 * 13 11 2 15 15 O 1.34229 * 119.99751 * 88.72497 * 13 11 2 16 16 C 1.45197 * 116.99700 * 185.16008 * 15 13 11 17 17 C 1.52994 * 109.47205 * 175.43338 * 16 15 13 18 18 C 1.50699 * 115.55063 * 278.63785 * 17 16 15 19 19 H 1.08001 * 120.00419 * 121.94970 * 18 17 16 20 20 C 1.37889 * 119.99926 * 301.94854 * 18 17 16 21 21 N 1.31512 * 120.00302 * 192.33957 * 20 18 17 22 22 Si 1.86799 * 119.99628 * 12.34074 * 20 18 17 23 23 H 1.48499 * 109.47259 * 93.67416 * 22 20 18 24 24 H 1.48497 * 109.46902 * 213.67963 * 22 20 18 25 25 H 1.48499 * 109.47335 * 333.67514 * 22 20 18 26 26 C 1.53000 * 117.50440 * 132.92879 * 17 16 15 27 27 C 1.53000 * 117.50039 * 64.30242 * 17 16 15 28 28 H 1.08993 * 109.47361 * 294.65456 * 1 2 3 29 29 H 1.08995 * 109.47070 * 54.66353 * 1 2 3 30 30 H 1.09011 * 109.46629 * 174.66027 * 1 2 3 31 31 H 1.09001 * 109.47294 * 58.54889 * 7 5 4 32 32 H 1.09007 * 109.47158 * 178.54909 * 7 5 4 33 33 H 1.09001 * 109.47508 * 298.54675 * 7 5 4 34 34 H 1.09000 * 109.47041 * 61.45612 * 10 8 5 35 35 H 1.09001 * 109.47131 * 181.45175 * 10 8 5 36 36 H 1.08995 * 109.47195 * 301.45313 * 10 8 5 37 37 H 1.09007 * 109.47233 * 295.43272 * 16 15 13 38 38 H 1.08999 * 109.47391 * 55.43189 * 16 15 13 39 39 H 0.96989 * 119.99863 * 179.97438 * 21 20 18 40 40 H 1.09002 * 117.49381 * 359.97438 * 26 17 16 41 41 H 1.08998 * 117.50513 * 145.02513 * 26 17 16 42 42 H 1.09004 * 117.50193 * 214.97948 * 27 17 16 43 43 H 1.09000 * 117.49757 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6963 1.1587 5 6 3.2380 -1.3630 0.7667 6 1 4.0685 -0.6578 0.7366 7 6 3.5496 -2.5195 1.7186 8 6 2.9196 -1.8923 -0.6549 9 1 2.3541 -2.8228 -0.6058 10 6 4.2022 -2.0780 -1.4683 11 6 2.0541 -0.7465 -1.2421 12 1 2.6620 -0.0835 -1.8575 13 6 0.9074 -1.3078 -2.0429 14 8 0.5105 -2.4283 -1.8263 15 8 0.3270 -0.5629 -2.9969 16 6 -0.8435 -1.1222 -3.6489 17 6 -1.4293 -0.0921 -4.6167 18 6 -2.3096 0.9595 -3.9921 19 1 -2.0632 2.0052 -4.1023 20 6 -3.4298 0.5866 -3.2798 21 7 -4.3255 1.4888 -2.9432 22 14 -3.6751 -1.2001 -2.7930 23 1 -3.1341 -1.4199 -1.4276 24 1 -5.1244 -1.5230 -2.8091 25 1 -2.9618 -2.0778 -3.7553 26 6 -1.7895 -0.5703 -6.0246 27 6 -0.5679 0.3256 -5.8102 28 1 -0.3634 0.4287 0.9339 29 1 -0.3633 0.5943 -0.8383 30 1 -0.3633 -1.0233 -0.0956 31 1 2.7195 -3.2260 1.7160 32 1 4.4581 -3.0251 1.3910 33 1 3.6932 -2.1315 2.7270 34 1 4.8398 -2.8139 -0.9783 35 1 3.9500 -2.4256 -2.4701 36 1 4.7304 -1.1270 -1.5358 37 1 -0.5588 -2.0182 -4.2006 38 1 -1.5897 -1.3800 -2.8974 39 1 -5.1137 1.2264 -2.4425 40 1 -1.6088 -1.6188 -6.2616 41 1 -2.6635 -0.1245 -6.4994 42 1 -0.6384 1.3609 -6.1439 43 1 0.4159 -0.1338 -5.9062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860134186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:03 Heat of formation + Delta-G solvation = -108.788367 kcal Electronic energy + Delta-G solvation = -23779.124388 eV Core-core repulsion = 20404.447009 eV Total energy + Delta-G solvation = -3374.677378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90151 -39.12409 -37.10431 -35.44716 -33.88415 -32.90894 -32.23235 -29.39214 -28.12196 -27.05491 -25.29063 -23.56516 -22.59457 -21.56085 -20.91205 -19.61171 -19.21255 -17.31883 -16.83178 -16.77914 -16.03393 -15.78609 -15.55480 -14.80698 -14.57270 -14.02826 -13.66551 -13.43434 -13.20761 -12.98524 -12.63401 -12.53618 -12.50848 -12.21016 -12.07398 -11.86611 -11.78618 -11.64704 -11.13667 -10.97497 -10.82078 -10.75948 -10.74604 -10.59779 -10.44382 -10.17356 -9.86062 -9.64711 -9.59549 -8.99980 -8.71058 -8.57578 -6.21817 -4.19606 2.49546 3.01686 3.21641 3.29150 3.34505 3.67482 4.23288 4.30467 4.51553 4.66484 4.74213 4.89524 5.01587 5.10445 5.16732 5.23977 5.29181 5.33761 5.36612 5.52053 5.55308 5.59842 5.63672 5.74265 5.79105 5.86185 5.92601 5.97691 6.02346 6.09861 6.11720 6.16574 6.29351 6.44856 6.49630 6.63711 6.84943 6.88546 7.02674 7.10356 7.64054 8.17754 8.41316 8.83660 9.41772 10.89820 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.005626 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.586298 B = 4975.680427 C = 5527.921517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.085 0.915 4 O -0.366 6.366 5 C 0.077 3.923 6 H 0.073 0.927 7 C -0.145 4.145 8 C -0.115 4.115 9 H 0.107 0.893 10 C -0.142 4.142 11 C -0.116 4.116 12 H 0.116 0.884 13 C 0.471 3.529 14 O -0.517 6.517 15 O -0.335 6.335 16 C 0.103 3.897 17 C -0.004 4.004 18 C -0.484 4.484 19 H 0.082 0.918 20 C 0.082 3.918 21 N -0.886 5.886 22 Si 0.865 3.135 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.259 1.259 26 C -0.188 4.188 27 C -0.171 4.171 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.267 0.733 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.239 -5.708 4.548 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.037 3.963 3 H 0.103 0.897 4 O -0.286 6.286 5 C 0.020 3.980 6 H 0.091 0.909 7 C -0.202 4.202 8 C -0.133 4.133 9 H 0.125 0.875 10 C -0.199 4.199 11 C -0.136 4.136 12 H 0.134 0.866 13 C 0.314 3.686 14 O -0.407 6.407 15 O -0.250 6.250 16 C 0.031 3.969 17 C -0.005 4.005 18 C -0.521 4.521 19 H 0.100 0.900 20 C -0.121 4.121 21 N -0.522 5.522 22 Si 0.694 3.306 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.184 1.184 26 C -0.226 4.226 27 C -0.208 4.208 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.798 -5.989 4.872 17.583 hybrid contribution -0.335 -1.065 0.073 1.119 sum 15.463 -7.054 4.945 17.701 Atomic orbital electron populations 1.22249 0.92718 1.03835 1.04362 1.22555 0.95980 0.95207 0.82532 0.89673 1.88937 1.39538 1.67601 1.32478 1.23156 0.88028 0.94040 0.92821 0.90944 1.21769 1.02080 0.97161 0.99219 1.22937 0.96557 0.99125 0.94720 0.87533 1.21759 0.95922 1.02161 1.00097 1.22644 0.94678 0.99222 0.97015 0.86612 1.23039 0.83221 0.83999 0.78295 1.90609 1.63414 1.20420 1.66221 1.86550 1.42606 1.48515 1.47374 1.23463 0.83029 0.95473 0.94981 1.19295 0.98572 0.96768 0.85881 1.20259 1.06279 0.92596 1.32920 0.90032 1.24908 0.95061 0.96857 0.95293 1.69903 1.09953 1.33949 1.38428 0.87254 0.76959 0.86572 0.79821 1.20182 1.21748 1.18414 1.23144 0.99436 0.97546 1.02447 1.22667 0.93593 0.99630 1.04927 0.90987 0.89051 0.91743 0.91605 0.91111 0.91729 0.91793 0.92052 0.92093 0.93090 0.92034 0.92332 0.91161 0.88745 0.89351 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.45 37.16 0.31 -2.74 16 2 C 0.10 1.39 4.05 -26.16 -0.11 1.29 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 4 O -0.37 -5.37 10.89 -35.23 -0.38 -5.75 16 5 C 0.08 0.87 3.42 -25.68 -0.09 0.78 16 6 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 7 C -0.15 -1.38 9.67 37.15 0.36 -1.02 16 8 C -0.11 -1.41 2.66 -88.43 -0.23 -1.64 16 9 H 0.11 1.53 6.77 -51.93 -0.35 1.18 16 10 C -0.14 -1.32 9.19 37.16 0.34 -0.97 16 11 C -0.12 -1.66 3.15 -90.06 -0.28 -1.94 16 12 H 0.12 1.38 7.84 -51.93 -0.41 0.98 16 13 C 0.47 8.82 4.87 36.01 0.18 8.99 16 14 O -0.52 -10.86 14.78 -18.75 -0.28 -11.14 16 15 O -0.33 -6.95 9.72 -39.26 -0.38 -7.33 16 16 C 0.10 2.33 4.10 37.15 0.15 2.49 16 17 C 0.00 -0.10 1.22 -155.66 -0.19 -0.29 16 18 C -0.48 -13.26 9.48 -34.44 -0.33 -13.59 16 19 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 20 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 21 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 22 Si 0.86 21.76 24.88 -169.99 -4.23 17.54 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.26 -6.21 5.84 56.52 0.33 -5.88 16 26 C -0.19 -3.90 9.88 -26.73 -0.26 -4.16 16 27 C -0.17 -3.43 9.93 -26.73 -0.27 -3.70 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.75 7.51 -51.93 -0.39 1.36 16 30 H 0.06 1.27 6.68 -51.92 -0.35 0.92 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 38 H 0.06 1.51 3.07 -51.93 -0.16 1.35 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 41 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -30.92 341.61 -7.04 -37.96 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.18 Total: 3.42 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.51 Total: -14.28 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.04 Total: -24.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.54 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.92 -7.04 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860134186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.826 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds