Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.33087 * 2 1 4 4 O 1.44416 * 110.37080 * 122.36377 * 2 1 3 5 5 C 1.44432 * 105.27358 * 159.34297 * 4 2 1 6 6 H 1.09001 * 110.36932 * 78.32334 * 5 4 2 7 7 C 1.53002 * 110.36900 * 200.65809 * 5 4 2 8 8 C 1.54473 * 104.80376 * 319.49122 * 5 4 2 9 9 H 1.08999 * 110.51304 * 142.62494 * 8 5 4 10 10 C 1.53002 * 110.51164 * 265.33478 * 8 5 4 11 11 C 1.54471 * 110.37204 * 237.74833 * 2 1 3 12 12 H 1.09001 * 110.51649 * 98.54415 * 11 2 1 13 13 C 1.50704 * 110.51427 * 335.83383 * 11 2 1 14 14 O 1.20827 * 119.99857 * 311.57441 * 13 11 2 15 15 O 1.34224 * 120.00038 * 131.56921 * 13 11 2 16 16 C 1.45202 * 117.00039 * 174.82840 * 15 13 11 17 17 C 1.52994 * 109.47372 * 184.89250 * 16 15 13 18 18 C 1.50704 * 115.55128 * 184.72093 * 17 16 15 19 19 H 1.08007 * 119.99833 * 144.09302 * 18 17 16 20 20 C 1.37869 * 120.00048 * 324.09756 * 18 17 16 21 21 N 1.31513 * 120.00173 * 3.58802 * 20 18 17 22 22 Si 1.86799 * 120.00109 * 183.58793 * 20 18 17 23 23 H 1.48497 * 109.47107 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47275 * 119.99771 * 22 20 18 25 25 H 1.48496 * 109.47406 * 239.99769 * 22 20 18 26 26 C 1.53005 * 117.50150 * 39.04811 * 17 16 15 27 27 C 1.53006 * 117.49804 * 330.39199 * 17 16 15 28 28 H 1.08993 * 109.47470 * 182.18357 * 1 2 3 29 29 H 1.08999 * 109.47233 * 302.18661 * 1 2 3 30 30 H 1.09001 * 109.47262 * 62.18129 * 1 2 3 31 31 H 1.09007 * 109.46691 * 175.38254 * 7 5 4 32 32 H 1.08998 * 109.47280 * 295.37707 * 7 5 4 33 33 H 1.08993 * 109.47513 * 55.38680 * 7 5 4 34 34 H 1.08995 * 109.47192 * 168.51072 * 10 8 5 35 35 H 1.09004 * 109.47245 * 288.51061 * 10 8 5 36 36 H 1.09001 * 109.47018 * 48.50986 * 10 8 5 37 37 H 1.09006 * 109.46602 * 304.89097 * 16 15 13 38 38 H 1.08996 * 109.47016 * 64.88373 * 16 15 13 39 39 H 0.96999 * 120.00243 * 185.00343 * 21 20 18 40 40 H 1.09000 * 117.49503 * 0.02562 * 26 17 16 41 41 H 1.08999 * 117.49867 * 145.02308 * 26 17 16 42 42 H 1.09007 * 117.49734 * 214.98422 * 27 17 16 43 43 H 1.08998 * 117.49355 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0327 -0.7247 1.1435 5 6 3.3873 -1.0879 0.7984 6 1 4.0524 -0.2332 0.9219 7 6 3.8600 -2.2610 1.6594 8 6 3.3178 -1.5049 -0.6874 9 1 4.2109 -1.1760 -1.2186 10 6 3.1461 -3.0202 -0.8114 11 6 2.0677 -0.7728 -1.2247 12 1 2.3429 -0.0819 -2.0216 13 6 1.0443 -1.7649 -1.7141 14 8 0.5000 -2.5072 -0.9315 15 8 0.7375 -1.8238 -3.0195 16 6 -0.1692 -2.8785 -3.4366 17 6 -0.3033 -2.8626 -4.9606 18 6 -1.3020 -3.8339 -5.5353 19 1 -1.8863 -3.5588 -6.4011 20 6 -1.4699 -5.0737 -4.9560 21 7 -0.8106 -5.3824 -3.8607 22 14 -2.6338 -6.3149 -5.7267 23 1 -3.2485 -5.7275 -6.9441 24 1 -1.8784 -7.5391 -6.0957 25 1 -3.6992 -6.6653 -4.7534 26 6 0.9589 -2.5806 -5.7781 27 6 -0.1371 -1.5174 -5.6705 28 1 -0.3634 -1.0268 0.0392 29 1 -0.3633 0.5474 0.8697 30 1 -0.3634 0.4796 -0.9089 31 1 4.8510 -2.5758 1.3320 32 1 3.9038 -1.9510 2.7034 33 1 3.1623 -3.0919 1.5560 34 1 2.8958 -3.2744 -1.8413 35 1 4.0757 -3.5154 -0.5306 36 1 2.3446 -3.3503 -0.1506 37 1 0.2242 -3.8433 -3.1165 38 1 -1.1474 -2.7167 -2.9840 39 1 -0.8723 -6.2781 -3.4936 40 1 1.8850 -2.4068 -5.2301 41 1 1.0668 -3.0973 -6.7317 42 1 -0.7499 -1.3351 -6.5534 43 1 0.0675 -0.6438 -5.0516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860134187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -108.633650 kcal Electronic energy + Delta-G solvation = -23854.361750 eV Core-core repulsion = 20479.691081 eV Total energy + Delta-G solvation = -3374.670669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89222 -38.79046 -36.72243 -34.93426 -33.91736 -32.62494 -32.27400 -29.10716 -27.44830 -26.47102 -25.49710 -24.00448 -22.29093 -21.15839 -20.18818 -19.47104 -18.93742 -17.46614 -16.63674 -16.21666 -15.94346 -15.69119 -15.00143 -14.64622 -14.38172 -13.92284 -13.77612 -13.42652 -12.94386 -12.76041 -12.44850 -12.38864 -11.87667 -11.77955 -11.71101 -11.62802 -11.36819 -11.19869 -11.13432 -11.07005 -10.77499 -10.73170 -10.56036 -10.48473 -10.23216 -9.78767 -9.73440 -9.57859 -9.34046 -8.87114 -8.79624 -8.16844 -6.13060 -4.24112 2.81085 3.21242 3.30150 3.34068 3.43031 3.77722 4.28386 4.45365 4.59184 4.83624 4.87114 4.93408 5.14863 5.26918 5.33822 5.38157 5.45957 5.49783 5.55036 5.56919 5.75949 5.82815 5.83812 6.00501 6.03350 6.12819 6.12972 6.18878 6.38663 6.43348 6.45368 6.56186 6.74045 6.76796 6.92481 6.97967 7.20079 7.35223 7.40473 7.65693 7.87309 8.24379 8.61539 8.76485 9.38607 10.85045 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.004750 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.294984 B = 5893.207292 C = 6185.107403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 H 0.078 0.922 4 O -0.357 6.357 5 C 0.076 3.924 6 H 0.068 0.932 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.091 0.909 10 C -0.156 4.156 11 C -0.119 4.119 12 H 0.108 0.892 13 C 0.470 3.530 14 O -0.498 6.498 15 O -0.371 6.371 16 C 0.108 3.892 17 C 0.046 3.954 18 C -0.485 4.485 19 H 0.069 0.931 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.199 4.199 27 C -0.203 4.203 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.052 0.948 39 H 0.266 0.734 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 8.886 7.647 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.096 0.904 4 O -0.276 6.276 5 C 0.018 3.982 6 H 0.086 0.914 7 C -0.205 4.205 8 C -0.123 4.123 9 H 0.109 0.891 10 C -0.213 4.213 11 C -0.138 4.138 12 H 0.126 0.874 13 C 0.312 3.688 14 O -0.386 6.386 15 O -0.288 6.288 16 C 0.036 3.964 17 C 0.046 3.954 18 C -0.523 4.523 19 H 0.087 0.913 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.237 4.237 27 C -0.241 4.241 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.725 8.447 8.208 14.658 hybrid contribution -0.423 -0.565 -0.742 1.024 sum 8.302 7.882 7.466 13.667 Atomic orbital electron populations 1.22213 0.92797 1.05687 1.02169 1.22755 0.96058 0.94233 0.83364 0.90437 1.89196 1.26665 1.74370 1.37403 1.22992 0.84965 0.97095 0.93158 0.91411 1.21877 1.01392 0.97975 0.99303 1.22478 0.96164 0.97570 0.96094 0.89074 1.22151 1.02807 0.93233 1.03118 1.22563 0.94452 0.97191 0.99627 0.87419 1.22640 0.81429 0.83004 0.81699 1.90593 1.50621 1.41178 1.56254 1.86372 1.62297 1.54899 1.25235 1.23432 0.90308 0.88183 0.94448 1.19111 0.95246 0.93046 0.88036 1.20602 1.20537 0.98159 1.12971 0.91321 1.25085 0.95817 0.98584 0.94238 1.69692 1.42456 1.20421 1.19657 0.86323 0.80479 0.80797 0.79252 1.19569 1.20703 1.20734 1.22951 0.93665 1.04380 1.02684 1.22844 1.04289 0.93843 1.03093 0.88873 0.91827 0.91281 0.91242 0.92217 0.90795 0.92242 0.92263 0.89884 0.85905 0.92933 0.92317 0.91294 0.90663 0.90885 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.67 37.16 0.32 -2.18 16 2 C 0.09 1.27 3.72 -25.96 -0.10 1.18 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 O -0.36 -5.30 11.04 -35.23 -0.39 -5.69 16 5 C 0.08 0.90 3.83 -25.96 -0.10 0.80 16 6 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.15 -1.60 8.50 37.16 0.32 -1.28 16 8 C -0.10 -1.33 3.63 -89.05 -0.32 -1.66 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 10 C -0.16 -2.32 6.69 37.16 0.25 -2.07 16 11 C -0.12 -1.72 3.50 -90.20 -0.32 -2.03 16 12 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.47 9.00 3.96 36.01 0.14 9.14 16 14 O -0.50 -10.84 12.32 -18.75 -0.23 -11.07 16 15 O -0.37 -7.96 8.49 -39.24 -0.33 -8.29 16 16 C 0.11 2.69 4.58 37.15 0.17 2.86 16 17 C 0.05 1.16 2.45 -155.66 -0.38 0.78 16 18 C -0.49 -13.12 9.06 -34.44 -0.31 -13.43 16 19 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 20 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 21 N -0.88 -24.47 10.31 55.43 0.57 -23.90 16 22 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.20 -4.54 9.66 -26.69 -0.26 -4.80 16 27 C -0.20 -4.49 9.63 -26.69 -0.26 -4.75 16 28 H 0.09 1.67 5.48 -51.93 -0.28 1.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.61 7.86 -51.92 -0.41 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.93 6.41 -51.93 -0.33 0.59 16 34 H 0.06 1.02 7.23 -51.93 -0.38 0.64 16 35 H 0.06 0.72 7.43 -51.93 -0.39 0.34 16 36 H 0.08 1.44 5.52 -51.93 -0.29 1.15 16 37 H 0.12 3.37 5.81 -51.93 -0.30 3.07 16 38 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.27 7.03 8.32 -40.82 -0.34 6.69 16 40 H 0.07 1.50 7.81 -51.93 -0.41 1.10 16 41 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.54 7.51 -51.93 -0.39 1.15 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -29.20 334.90 -8.24 -37.44 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.94 Total: 6.56 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.94 Total: -15.79 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.57 Total: -23.90 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.95 Total: -25.06 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.20 -8.24 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860134187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.193 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds