Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.86788 * 2 1 4 4 O 1.43746 * 109.87618 * 121.15841 * 2 1 3 5 5 C 1.44423 * 106.99996 * 145.91567 * 4 2 1 6 6 H 1.09000 * 110.60400 * 78.46857 * 5 4 2 7 7 C 1.52999 * 110.65388 * 201.48427 * 5 4 2 8 8 C 1.54999 * 103.46952 * 319.98694 * 5 4 2 9 9 H 1.08999 * 110.90849 * 278.76266 * 8 5 4 10 10 C 1.53003 * 110.90767 * 155.19316 * 8 5 4 11 11 C 1.54093 * 109.87840 * 238.98806 * 2 1 3 12 12 H 1.09004 * 110.49028 * 357.22644 * 11 2 1 13 13 C 1.50706 * 110.60041 * 119.81279 * 11 2 1 14 14 O 1.20830 * 119.99944 * 30.17748 * 13 11 2 15 15 O 1.34224 * 120.00459 * 210.17468 * 13 11 2 16 16 C 1.45193 * 117.00254 * 185.07076 * 15 13 11 17 17 C 1.53003 * 109.47205 * 175.25532 * 16 15 13 18 18 C 1.50705 * 115.54887 * 279.41357 * 17 16 15 19 19 H 1.08001 * 119.99445 * 93.19355 * 18 17 16 20 20 C 1.37871 * 119.99915 * 273.19466 * 18 17 16 21 21 N 1.31509 * 120.00470 * 5.86520 * 20 18 17 22 22 Si 1.86808 * 119.99621 * 185.86438 * 20 18 17 23 23 H 1.48499 * 109.46947 * 89.99835 * 22 20 18 24 24 H 1.48498 * 109.47076 * 209.99764 * 22 20 18 25 25 H 1.48501 * 109.47175 * 329.99994 * 22 20 18 26 26 C 1.53001 * 117.49919 * 133.70981 * 17 16 15 27 27 C 1.52998 * 117.49959 * 65.08467 * 17 16 15 28 28 H 1.09001 * 109.46589 * 185.78338 * 1 2 3 29 29 H 1.09000 * 109.47226 * 305.77739 * 1 2 3 30 30 H 1.09000 * 109.47127 * 65.78464 * 1 2 3 31 31 H 1.08995 * 109.46932 * 174.06637 * 7 5 4 32 32 H 1.09001 * 109.46669 * 294.06217 * 7 5 4 33 33 H 1.08993 * 109.47426 * 54.05885 * 7 5 4 34 34 H 1.09000 * 109.46641 * 312.47648 * 10 8 5 35 35 H 1.08997 * 109.47010 * 72.48374 * 10 8 5 36 36 H 1.08999 * 109.46848 * 192.47983 * 10 8 5 37 37 H 1.08998 * 109.47503 * 295.25213 * 16 15 13 38 38 H 1.08998 * 109.47239 * 55.25203 * 16 15 13 39 39 H 0.97000 * 120.00120 * 185.00297 * 21 20 18 40 40 H 1.09000 * 117.50167 * 359.97438 * 26 17 16 41 41 H 1.09004 * 117.49583 * 145.01966 * 26 17 16 42 42 H 1.09001 * 117.50046 * 214.97781 * 27 17 16 43 43 H 1.08995 * 117.50204 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6994 1.1568 5 6 3.2380 -1.3660 0.7634 6 1 4.0689 -0.6610 0.7356 7 6 3.5471 -2.5283 1.7092 8 6 2.9196 -1.8906 -0.6600 9 1 2.3542 -2.8213 -0.6141 10 6 4.2021 -2.0734 -1.4741 11 6 2.0540 -0.7466 -1.2420 12 1 1.2246 -1.1525 -1.8213 13 6 2.8939 0.1684 -2.0956 14 8 3.5206 1.0657 -1.5837 15 8 2.9457 -0.0134 -3.4245 16 6 3.8612 0.8315 -4.1702 17 6 3.8697 0.4026 -5.6388 18 6 4.7246 -0.7960 -5.9609 19 1 4.2889 -1.7842 -5.9664 20 6 6.0629 -0.6309 -6.2486 21 7 6.6197 0.5546 -6.1298 22 14 7.0852 -2.0912 -6.8071 23 1 7.0345 -2.1936 -8.2877 24 1 8.4927 -1.9056 -6.3717 25 1 6.5410 -3.3353 -6.2059 26 6 3.7679 1.5031 -6.6968 27 6 2.5752 0.5813 -6.4345 28 1 -0.3632 -1.0225 0.1036 29 1 -0.3634 0.6008 0.8337 30 1 -0.3633 0.4215 -0.9372 31 1 4.4089 -3.0812 1.3357 32 1 3.7680 -2.1389 2.7030 33 1 2.6846 -3.1924 1.7626 34 1 4.8243 -1.1838 -1.3764 35 1 4.7475 -2.9410 -1.1029 36 1 3.9479 -2.2255 -2.5231 37 1 3.5386 1.8701 -4.0970 38 1 4.8650 0.7330 -3.7570 39 1 7.5415 0.6868 -6.4010 40 1 3.6944 2.5327 -6.3467 41 1 4.3194 1.3604 -7.6261 42 1 2.3420 -0.1678 -7.1913 43 1 1.7176 1.0049 -5.9119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860134188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -123.470256 kcal Electronic energy + Delta-G solvation = -23502.736123 eV Core-core repulsion = 20127.422090 eV Total energy + Delta-G solvation = -3375.314033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82854 -38.92151 -36.77472 -35.25890 -33.83866 -32.87323 -32.00679 -29.39522 -27.81004 -26.61536 -25.31372 -23.58256 -22.16037 -21.18774 -21.08426 -19.45639 -19.27598 -17.17160 -16.67276 -16.46772 -15.87049 -15.52426 -14.98106 -14.88965 -14.62058 -13.92189 -13.65659 -13.39315 -13.14184 -12.88524 -12.37941 -12.32765 -12.21226 -12.06687 -12.00831 -11.83326 -11.60025 -11.48799 -11.20229 -11.05652 -10.86564 -10.71517 -10.60416 -10.45436 -10.31163 -10.02551 -9.92565 -9.64599 -9.54990 -8.82939 -8.51451 -8.27581 -6.12282 -4.19372 2.61181 3.18657 3.25491 3.32346 3.34579 3.69712 4.34212 4.41304 4.54282 4.69583 4.92826 5.12905 5.16386 5.21030 5.25670 5.26933 5.41306 5.44306 5.46336 5.48110 5.61444 5.77600 5.88785 5.93661 5.95134 5.98334 6.02455 6.12304 6.16662 6.22602 6.29936 6.43721 6.49153 6.61368 6.70441 6.88226 7.00317 7.21929 7.33298 7.43889 7.80227 8.31484 8.34950 8.83639 9.47614 10.96599 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.005153 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.671435 B = 5432.662228 C = 6338.179284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 H 0.085 0.915 4 O -0.368 6.368 5 C 0.074 3.926 6 H 0.076 0.924 7 C -0.143 4.143 8 C -0.101 4.101 9 H 0.098 0.902 10 C -0.159 4.159 11 C -0.118 4.118 12 H 0.115 0.885 13 C 0.468 3.532 14 O -0.519 6.519 15 O -0.341 6.341 16 C 0.115 3.885 17 C 0.036 3.964 18 C -0.492 4.492 19 H 0.063 0.937 20 C 0.070 3.930 21 N -0.879 5.879 22 Si 0.890 3.110 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.144 4.144 27 C -0.201 4.201 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -4.034 10.849 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 H 0.102 0.898 4 O -0.288 6.288 5 C 0.017 3.983 6 H 0.094 0.906 7 C -0.200 4.200 8 C -0.120 4.120 9 H 0.116 0.884 10 C -0.216 4.216 11 C -0.138 4.138 12 H 0.133 0.867 13 C 0.311 3.689 14 O -0.409 6.409 15 O -0.256 6.256 16 C 0.042 3.958 17 C 0.035 3.965 18 C -0.529 4.529 19 H 0.081 0.919 20 C -0.133 4.133 21 N -0.516 5.516 22 Si 0.717 3.283 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.182 4.182 27 C -0.238 4.238 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.382 -3.659 11.194 14.455 hybrid contribution 0.880 -0.451 -0.663 1.190 sum -7.502 -4.110 10.531 13.567 Atomic orbital electron populations 1.21959 0.93148 1.03011 1.02651 1.22681 0.94983 0.96566 0.83005 0.89750 1.88850 1.39783 1.67509 1.32658 1.23298 0.88169 0.94092 0.92755 0.90575 1.21763 1.02123 0.96908 0.99255 1.22704 0.97175 0.97259 0.94881 0.88355 1.21946 0.95746 1.02561 1.01341 1.22530 0.99296 0.95797 0.96161 0.86713 1.23044 0.80096 0.82953 0.82836 1.90619 1.43381 1.32503 1.74385 1.86522 1.60076 1.60593 1.18406 1.23045 0.91072 0.89821 0.91845 1.18808 0.94776 0.97195 0.85701 1.20428 0.92662 0.91786 1.48072 0.91895 1.25005 0.97454 0.95917 0.94943 1.70008 1.13693 1.22167 1.45701 0.86625 0.79529 0.83057 0.79092 1.20514 1.21199 1.19692 1.22544 1.00359 0.93536 1.01727 1.22932 0.92047 1.03757 1.05062 0.91605 0.91602 0.91035 0.90913 0.91880 0.91771 0.91999 0.91697 0.90126 0.94143 0.90660 0.92829 0.91697 0.89421 0.90097 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.36 37.16 0.35 -1.25 16 2 C 0.09 1.16 3.60 -26.16 -0.09 1.07 16 3 H 0.08 1.30 6.87 -51.93 -0.36 0.94 16 4 O -0.37 -5.19 10.89 -35.23 -0.38 -5.58 16 5 C 0.07 0.97 3.44 -25.68 -0.09 0.88 16 6 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 7 C -0.14 -1.45 9.66 37.16 0.36 -1.09 16 8 C -0.10 -1.33 3.09 -88.61 -0.27 -1.60 16 9 H 0.10 1.09 8.06 -51.93 -0.42 0.68 16 10 C -0.16 -2.35 8.23 37.16 0.31 -2.04 16 11 C -0.12 -1.70 3.12 -90.24 -0.28 -1.98 16 12 H 0.11 1.44 7.70 -51.93 -0.40 1.04 16 13 C 0.47 8.70 4.95 36.01 0.18 8.88 16 14 O -0.52 -10.90 15.39 -18.75 -0.29 -11.19 16 15 O -0.34 -7.11 9.82 -39.24 -0.39 -7.50 16 16 C 0.12 2.69 5.37 37.16 0.20 2.89 16 17 C 0.04 0.87 1.63 -155.66 -0.25 0.62 16 18 C -0.49 -13.07 8.83 -34.44 -0.30 -13.38 16 19 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 20 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 21 N -0.88 -24.39 12.83 55.43 0.71 -23.68 16 22 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.14 -3.31 9.27 -26.73 -0.25 -3.56 16 27 C -0.20 -4.31 9.93 -26.73 -0.27 -4.57 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.35 7.64 -51.93 -0.40 0.95 16 37 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 38 H 0.08 1.94 8.08 -51.93 -0.42 1.52 16 39 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.06 1.40 8.08 -51.93 -0.42 0.98 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -29.10 352.65 -7.95 -37.05 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.38 Total: 3.38 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.51 Total: -13.36 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.06 Total: -24.27 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.10 -7.95 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860134188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.424 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds