Wall clock time and date at job start Tue Mar 31 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.42123 * 2 1 4 4 O 1.44428 * 110.37152 * 122.30561 * 2 1 3 5 5 C 1.44423 * 105.27649 * 159.34571 * 4 2 1 6 6 H 1.08997 * 110.46597 * 78.36997 * 5 4 2 7 7 C 1.53001 * 110.37126 * 200.65815 * 5 4 2 8 8 C 1.54482 * 104.80182 * 319.49060 * 5 4 2 9 9 H 1.08997 * 110.62726 * 142.68697 * 8 5 4 10 10 C 1.53001 * 110.50748 * 265.33178 * 8 5 4 11 11 C 1.54476 * 110.37713 * 237.68886 * 2 1 3 12 12 H 1.09006 * 110.62585 * 335.88925 * 11 2 1 13 13 C 1.50698 * 110.51379 * 98.54490 * 11 2 1 14 14 O 1.20819 * 119.99853 * 114.64509 * 13 11 2 15 15 O 1.34223 * 119.99975 * 294.64533 * 13 11 2 16 16 C 1.45200 * 116.99939 * 175.64106 * 15 13 11 17 17 C 1.50696 * 112.90785 * 307.23902 * 16 15 13 18 18 H 1.08004 * 119.99722 * 114.22224 * 17 16 15 19 19 C 1.37877 * 120.00403 * 294.22064 * 17 16 15 20 20 N 1.31511 * 119.99777 * 7.18691 * 19 17 16 21 21 Si 1.86798 * 120.00146 * 187.18344 * 19 17 16 22 22 H 1.48501 * 109.47053 * 89.99904 * 21 19 17 23 23 H 1.48500 * 109.47291 * 210.00414 * 21 19 17 24 24 H 1.48502 * 109.46933 * 330.00202 * 21 19 17 25 25 C 1.53787 * 113.61245 * 175.99189 * 16 15 13 26 26 C 1.53786 * 87.08038 * 220.01814 * 25 16 15 27 27 C 1.53786 * 87.17220 * 25.39055 * 26 25 16 28 28 H 1.09000 * 109.47084 * 182.30992 * 1 2 3 29 29 H 1.08998 * 109.47495 * 302.31454 * 1 2 3 30 30 H 1.09006 * 109.46655 * 62.31616 * 1 2 3 31 31 H 1.09000 * 109.46849 * 175.37900 * 7 5 4 32 32 H 1.09000 * 109.47287 * 295.38081 * 7 5 4 33 33 H 1.09000 * 109.47053 * 55.38422 * 7 5 4 34 34 H 1.09009 * 109.46793 * 174.64343 * 10 8 5 35 35 H 1.09003 * 109.47794 * 294.64104 * 10 8 5 36 36 H 1.09002 * 109.47720 * 54.64801 * 10 8 5 37 37 H 0.97001 * 120.00074 * 174.98657 * 20 19 17 38 38 H 1.09000 * 113.61019 * 105.47499 * 25 16 15 39 39 H 1.08990 * 113.69108 * 334.57621 * 25 16 15 40 40 H 1.08997 * 113.61303 * 139.98536 * 26 25 16 41 41 H 1.09000 * 113.61035 * 270.80371 * 26 25 16 42 42 H 1.08992 * 113.61194 * 89.15625 * 27 26 25 43 43 H 1.08999 * 113.61627 * 220.06032 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 1.1444 5 6 3.3873 -1.0871 0.7997 6 1 4.0539 -0.2335 0.9226 7 6 3.8600 -2.2593 1.6619 8 6 3.3178 -1.5056 -0.6857 9 1 4.2106 -1.1791 -1.2189 10 6 3.1462 -3.0211 -0.8081 11 6 2.0678 -0.7740 -1.2239 12 1 1.3286 -1.4920 -1.5794 13 6 2.4483 0.1800 -2.3266 14 8 3.6034 0.2813 -2.6660 15 8 1.5039 0.9173 -2.9317 16 6 1.9535 1.8847 -3.9168 17 6 3.0205 2.8079 -3.3878 18 1 4.0185 2.7715 -3.7990 19 6 2.7228 3.6992 -2.3788 20 7 1.5524 3.6489 -1.7812 21 14 3.9818 4.9782 -1.8607 22 1 3.7954 6.2113 -2.6669 23 1 3.8014 5.2957 -0.4213 24 1 5.3497 4.4442 -2.0822 25 6 0.8044 2.6162 -4.6307 26 6 1.6301 2.4884 -5.9218 27 6 2.3006 1.2616 -5.2812 28 1 -0.3633 -1.0268 0.0414 29 1 -0.3634 0.5493 0.8685 30 1 -0.3633 0.4775 -0.9101 31 1 4.8509 -2.5744 1.3349 32 1 3.9037 -1.9482 2.7056 33 1 3.1622 -3.0904 1.5592 34 1 3.0039 -3.2872 -1.8556 35 1 4.0363 -3.5198 -0.4243 36 1 2.2763 -3.3361 -0.2319 37 1 1.3693 4.2266 -1.0238 38 1 0.6695 3.6457 -4.2989 39 1 -0.1280 2.0523 -4.6511 40 1 1.0316 2.2496 -6.8009 41 1 2.3125 3.3219 -6.0880 42 1 1.7786 0.3256 -5.4792 43 1 3.3716 1.1990 -5.4738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:49 Heat of formation + Delta-G solvation = -120.704676 kcal Electronic energy + Delta-G solvation = -24384.150223 eV Core-core repulsion = 21008.956114 eV Total energy + Delta-G solvation = -3375.194108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17383 -38.76554 -36.91568 -34.27511 -33.47884 -32.37821 -32.28006 -28.74819 -27.32377 -26.12568 -24.57821 -24.02482 -22.87214 -21.48913 -20.06110 -19.12607 -18.59077 -17.22507 -16.40123 -15.62336 -15.19161 -14.89142 -14.77946 -14.63384 -14.17142 -13.89576 -13.44988 -13.38885 -12.74599 -12.38363 -12.21863 -12.20144 -11.80075 -11.65630 -11.61101 -11.52012 -11.37928 -11.13766 -11.02117 -10.90961 -10.53893 -10.40675 -10.31113 -10.24919 -10.19201 -9.93955 -9.80494 -9.33604 -9.20754 -8.79685 -8.54260 -8.52603 -6.14176 -4.23815 3.22974 3.31268 3.36611 3.46549 3.88472 4.28780 4.34308 4.74417 4.92037 5.13889 5.22603 5.30552 5.44047 5.49969 5.61756 5.68257 5.71918 5.75424 5.81284 5.85894 5.89718 5.96280 6.05863 6.09462 6.15264 6.18269 6.26239 6.35265 6.43853 6.49728 6.52456 6.55056 6.62763 6.67780 6.87793 7.08968 7.22664 7.29971 7.54590 7.77017 7.90692 8.38145 8.79891 9.24302 9.44890 10.89810 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.006993 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.173915 B = 4002.986022 C = 4578.677383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 H 0.084 0.916 4 O -0.372 6.372 5 C 0.074 3.926 6 H 0.068 0.932 7 C -0.144 4.144 8 C -0.118 4.118 9 H 0.107 0.893 10 C -0.138 4.138 11 C -0.114 4.114 12 H 0.103 0.897 13 C 0.474 3.526 14 O -0.504 6.504 15 O -0.347 6.347 16 C 0.240 3.760 17 C -0.508 4.508 18 H 0.067 0.933 19 C 0.075 3.925 20 N -0.862 5.862 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.161 4.161 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -9.221 2.407 9.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.034 3.966 3 H 0.102 0.898 4 O -0.292 6.292 5 C 0.016 3.984 6 H 0.086 0.914 7 C -0.201 4.201 8 C -0.137 4.137 9 H 0.125 0.875 10 C -0.195 4.195 11 C -0.134 4.134 12 H 0.122 0.878 13 C 0.316 3.684 14 O -0.393 6.393 15 O -0.263 6.263 16 C 0.206 3.794 17 C -0.546 4.546 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.498 5.498 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.145 4.145 26 C -0.169 4.169 27 C -0.198 4.198 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.707 -9.082 2.548 9.459 hybrid contribution 0.842 0.853 0.152 1.208 sum 0.134 -8.228 2.699 8.661 Atomic orbital electron populations 1.21743 0.92518 1.01735 1.03479 1.22794 0.95711 0.95702 0.82424 0.89834 1.89077 1.26773 1.74809 1.38583 1.22954 0.85104 0.97077 0.93235 0.91417 1.21858 1.01100 0.97656 0.99485 1.22563 0.99153 0.95849 0.96125 0.87499 1.21847 1.01730 0.94347 1.01557 1.22502 0.98990 0.97032 0.94842 0.87847 1.22390 0.84658 0.79756 0.81636 1.90519 1.20731 1.65008 1.62999 1.86428 1.39760 1.47309 1.52785 1.21219 0.93032 0.84321 0.80811 1.20933 0.96136 1.16384 1.21115 0.91458 1.25039 0.95193 0.96817 0.96007 1.70018 1.21158 1.38281 1.20390 0.86620 0.82087 0.81818 0.77776 1.20327 1.21088 1.19677 1.22881 0.96300 1.01441 0.93830 1.22519 0.99534 0.98724 0.96089 1.23568 1.00122 0.96531 0.99625 0.92695 0.92189 0.89660 0.91320 0.92364 0.91493 0.92696 0.92170 0.92342 0.92728 0.90617 0.92327 0.93050 0.90284 0.92200 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.52 37.16 0.35 -1.93 16 2 C 0.09 1.71 3.46 -25.96 -0.09 1.62 16 3 H 0.08 1.86 7.86 -51.93 -0.41 1.45 16 4 O -0.37 -6.58 11.04 -35.23 -0.39 -6.97 16 5 C 0.07 1.17 3.84 -25.95 -0.10 1.07 16 6 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.14 -1.74 8.42 37.16 0.31 -1.43 16 8 C -0.12 -1.92 3.22 -89.05 -0.29 -2.21 16 9 H 0.11 1.94 6.51 -51.93 -0.34 1.60 16 10 C -0.14 -1.76 7.74 37.16 0.29 -1.47 16 11 C -0.11 -2.10 2.81 -90.21 -0.25 -2.35 16 12 H 0.10 1.71 7.47 -51.93 -0.39 1.32 16 13 C 0.47 10.86 6.73 36.00 0.24 11.11 16 14 O -0.50 -12.73 13.68 -18.75 -0.26 -12.99 16 15 O -0.35 -8.45 9.93 -39.24 -0.39 -8.84 16 16 C 0.24 5.91 0.49 -90.87 -0.04 5.86 16 17 C -0.51 -13.76 6.40 -34.44 -0.22 -13.98 16 18 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 19 C 0.08 2.01 5.20 -17.82 -0.09 1.92 16 20 N -0.86 -23.29 12.59 55.43 0.70 -22.60 16 21 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.11 -2.40 7.20 -25.91 -0.19 -2.59 16 26 C -0.13 -2.61 7.80 -25.91 -0.20 -2.81 16 27 C -0.16 -3.50 7.21 -25.82 -0.19 -3.69 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.07 0.71 7.78 -51.93 -0.40 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.66 7.05 -51.93 -0.37 0.29 16 36 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 37 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 38 H 0.08 1.83 7.64 -51.93 -0.40 1.43 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.37 8.09 -51.93 -0.42 0.95 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -29.11 342.12 -7.89 -37.00 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.22 Total: 3.97 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.47 Total: -10.86 kcal Atomic # 7 Polarization: -23.29 SS G_CDS: 0.70 Total: -22.60 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.04 Total: -28.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.11 -7.89 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.704 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds