Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87073 * 2 1 4 4 O 1.43749 * 110.00035 * 121.07947 * 2 1 3 5 5 C 1.44380 * 106.97392 * 146.01229 * 4 2 1 6 6 H 1.08996 * 110.62021 * 78.59157 * 5 4 2 7 7 C 1.52994 * 110.61746 * 201.44275 * 5 4 2 8 8 C 1.55005 * 103.48641 * 319.93810 * 5 4 2 9 9 H 1.08999 * 110.90995 * 278.82281 * 8 5 4 10 10 C 1.53004 * 110.90341 * 155.22231 * 8 5 4 11 11 C 1.54092 * 109.88361 * 238.98731 * 2 1 3 12 12 H 1.08996 * 110.49034 * 119.58497 * 11 2 1 13 13 C 1.50705 * 110.48609 * 357.07669 * 11 2 1 14 14 O 1.20826 * 119.99700 * 241.72656 * 13 11 2 15 15 O 1.34224 * 120.00219 * 61.45088 * 13 11 2 16 16 C 1.45209 * 117.00155 * 175.03141 * 15 13 11 17 17 C 1.50692 * 112.84959 * 65.55721 * 16 15 13 18 18 H 1.08001 * 120.00125 * 245.21291 * 17 16 15 19 19 C 1.37875 * 120.00293 * 65.21081 * 17 16 15 20 20 N 1.31523 * 119.99786 * 357.81194 * 19 17 16 21 21 Si 1.86801 * 120.00569 * 177.81185 * 19 17 16 22 22 H 1.48496 * 109.47191 * 59.99854 * 21 19 17 23 23 H 1.48500 * 109.47386 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46739 * 300.00229 * 21 19 17 25 25 C 1.53785 * 113.60950 * 294.36506 * 16 15 13 26 26 C 1.53956 * 87.01608 * 220.04870 * 25 16 15 27 27 C 1.53779 * 113.61332 * 196.75708 * 16 15 13 28 28 H 1.08996 * 109.47108 * 181.00899 * 1 2 3 29 29 H 1.09002 * 109.47664 * 301.01321 * 1 2 3 30 30 H 1.09004 * 109.47041 * 61.00990 * 1 2 3 31 31 H 1.08995 * 109.47473 * 58.53935 * 7 5 4 32 32 H 1.09004 * 109.47072 * 178.54691 * 7 5 4 33 33 H 1.09001 * 109.47210 * 298.54178 * 7 5 4 34 34 H 1.08996 * 109.47612 * 307.29484 * 10 8 5 35 35 H 1.09007 * 109.46985 * 67.29489 * 10 8 5 36 36 H 1.09001 * 109.47074 * 187.29370 * 10 8 5 37 37 H 0.97002 * 120.00284 * 184.93338 * 20 19 17 38 38 H 1.08997 * 113.61304 * 334.56289 * 25 16 15 39 39 H 1.08996 * 113.61671 * 105.47314 * 25 16 15 40 40 H 1.08998 * 113.53765 * 270.81324 * 26 25 16 41 41 H 1.08997 * 113.74424 * 139.94264 * 26 25 16 42 42 H 1.09001 * 113.60951 * 254.52587 * 27 16 15 43 43 H 1.09001 * 113.61657 * 25.34836 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0216 -0.6973 1.1569 5 6 3.2417 -1.3608 0.7622 6 1 4.0713 -0.6543 0.7349 7 6 3.5549 -2.5208 1.7093 8 6 2.9226 -1.8882 -0.6600 9 1 2.3592 -2.8200 -0.6119 10 6 4.2045 -2.0690 -1.4755 11 6 2.0541 -0.7466 -1.2419 12 1 2.6579 -0.0822 -1.8600 13 6 0.9076 -1.3109 -2.0409 14 8 0.8131 -2.5047 -2.2015 15 8 -0.0115 -0.4878 -2.5694 16 6 -1.0244 -1.0890 -3.4185 17 6 -1.9354 -2.0265 -2.6688 18 1 -1.9337 -3.0814 -2.9004 19 6 -2.7710 -1.5376 -1.6871 20 7 -2.7422 -0.2603 -1.3751 21 14 -3.9440 -2.6894 -0.8000 22 1 -3.1684 -3.7536 -0.1137 23 1 -4.7274 -1.9228 0.2019 24 1 -4.8692 -3.3074 -1.7836 25 6 -0.4624 -1.6855 -4.7198 26 6 -1.7090 -1.1187 -5.4233 27 6 -1.7737 -0.0734 -4.2972 28 1 -0.3633 -1.0275 0.0181 29 1 -0.3634 0.5295 0.8807 30 1 -0.3633 0.4981 -0.8989 31 1 2.7258 -3.2283 1.7038 32 1 4.4640 -3.0237 1.3797 33 1 3.6980 -2.1367 2.7194 34 1 4.7816 -1.1446 -1.4552 35 1 4.7973 -2.8769 -1.0463 36 1 3.9479 -2.3146 -2.5060 37 1 -3.2771 0.0709 -0.6368 38 1 0.4700 -1.2239 -5.0447 39 1 -0.4185 -2.7746 -4.7176 40 1 -2.5552 -1.8058 -5.4302 41 1 -1.5029 -0.6912 -6.4045 42 1 -2.7867 0.1370 -3.9543 43 1 -1.2009 0.8303 -4.5053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = -117.084164 kcal Electronic energy + Delta-G solvation = -24606.854048 eV Core-core repulsion = 21231.816937 eV Total energy + Delta-G solvation = -3375.037111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27012 -38.73852 -36.88801 -34.37303 -33.35208 -32.37411 -32.25333 -28.96889 -26.96921 -26.12622 -24.56275 -23.64410 -22.82422 -21.70559 -20.52425 -19.01160 -18.53354 -16.86980 -16.31422 -15.64098 -15.46668 -15.18451 -14.78508 -14.45685 -14.13799 -13.85478 -13.46613 -13.18156 -12.74920 -12.57530 -12.17562 -12.16685 -11.84204 -11.58012 -11.34882 -11.27714 -11.13797 -11.05300 -10.93468 -10.84432 -10.59916 -10.50803 -10.30205 -10.23813 -10.21127 -9.87090 -9.68692 -9.47110 -9.09495 -8.78795 -8.53900 -8.38652 -6.10786 -4.21356 3.28901 3.33815 3.38555 3.45457 3.87880 4.15377 4.37182 4.66183 4.91827 5.12141 5.18685 5.30020 5.38661 5.47867 5.59781 5.63418 5.70184 5.73125 5.76760 5.86188 5.93255 5.95312 6.01784 6.14359 6.17956 6.25739 6.29831 6.44750 6.50323 6.53024 6.62891 6.66928 6.88742 6.90634 7.10614 7.33150 7.34576 7.51329 7.59149 7.79747 7.97434 8.36215 8.81863 9.21882 9.48586 10.93308 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.007321 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.692188 B = 3823.702847 C = 4589.267450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.087 3.913 3 H 0.069 0.931 4 O -0.371 6.371 5 C 0.074 3.926 6 H 0.066 0.934 7 C -0.144 4.144 8 C -0.111 4.111 9 H 0.106 0.894 10 C -0.138 4.138 11 C -0.121 4.121 12 H 0.104 0.896 13 C 0.477 3.523 14 O -0.507 6.507 15 O -0.345 6.345 16 C 0.240 3.760 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.160 4.160 26 C -0.132 4.132 27 C -0.107 4.107 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.264 0.736 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.598 1.248 0.520 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 H 0.086 0.914 4 O -0.291 6.291 5 C 0.017 3.983 6 H 0.084 0.916 7 C -0.201 4.201 8 C -0.129 4.129 9 H 0.124 0.876 10 C -0.195 4.195 11 C -0.140 4.140 12 H 0.122 0.878 13 C 0.318 3.682 14 O -0.395 6.395 15 O -0.261 6.261 16 C 0.207 3.793 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.716 3.284 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.198 4.198 26 C -0.170 4.170 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.275 1.054 0.727 10.355 hybrid contribution -0.508 -0.626 0.395 0.898 sum 9.767 0.428 1.122 9.840 Atomic orbital electron populations 1.22346 0.90023 1.04127 1.04414 1.22703 0.97537 0.94173 0.82633 0.91362 1.88920 1.39102 1.67727 1.33314 1.23145 0.88114 0.93805 0.93257 0.91590 1.21758 1.01932 0.97349 0.99094 1.22761 0.96400 0.99644 0.94140 0.87636 1.21704 0.96026 1.01406 1.00353 1.22621 0.95367 0.98546 0.97516 0.87841 1.22315 0.82302 0.85798 0.77739 1.90542 1.74767 1.16797 1.57434 1.86539 1.37388 1.42413 1.59772 1.21157 0.83642 0.90980 0.83538 1.20863 1.19180 0.93805 1.20865 0.91740 1.24968 0.96188 0.94939 0.96525 1.69961 1.39646 1.12436 1.27389 0.86708 0.81024 0.81161 0.79550 1.20107 1.21113 1.20063 1.23558 0.96309 1.00610 0.99327 1.22567 0.98651 0.99614 0.96120 1.22878 1.01590 0.95724 0.94236 0.91901 0.93640 0.86129 0.91646 0.91375 0.92086 0.92749 0.92269 0.92038 0.92655 0.92437 0.91961 0.90295 0.93140 0.90287 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 7.61 37.16 0.28 -2.98 16 2 C 0.09 1.58 4.05 -26.16 -0.11 1.48 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 O -0.37 -6.73 10.89 -35.23 -0.38 -7.12 16 5 C 0.07 1.08 3.43 -25.68 -0.09 0.99 16 6 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 7 C -0.14 -1.80 9.66 37.15 0.36 -1.44 16 8 C -0.11 -1.75 2.50 -88.61 -0.22 -1.97 16 9 H 0.11 1.96 6.84 -51.93 -0.35 1.61 16 10 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 11 C -0.12 -2.15 3.13 -90.25 -0.28 -2.43 16 12 H 0.10 1.58 7.86 -51.93 -0.41 1.17 16 13 C 0.48 10.65 5.30 36.01 0.19 10.84 16 14 O -0.51 -12.62 13.92 -18.75 -0.26 -12.89 16 15 O -0.34 -8.20 7.26 -39.24 -0.28 -8.48 16 16 C 0.24 5.84 0.47 -90.96 -0.04 5.80 16 17 C -0.51 -13.70 7.06 -34.45 -0.24 -13.94 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.08 2.11 5.27 -17.82 -0.09 2.02 16 20 N -0.86 -22.57 11.02 55.43 0.61 -21.96 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.16 -3.48 6.61 -25.82 -0.17 -3.65 16 26 C -0.13 -2.62 7.81 -25.83 -0.20 -2.82 16 27 C -0.11 -2.37 7.16 -25.92 -0.19 -2.56 16 28 H 0.06 1.56 7.43 -51.93 -0.39 1.18 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 2.81 5.10 -51.93 -0.26 2.54 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.41 8.09 -51.93 -0.42 0.99 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.90 7.51 -51.93 -0.39 1.51 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -28.73 337.81 -7.97 -36.70 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.25 Total: 4.51 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.46 Total: -12.04 kcal Atomic # 7 Polarization: -22.57 SS G_CDS: 0.61 Total: -21.96 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.93 Total: -28.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.73 -7.97 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.384 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds