Wall clock time and date at job start Tue Mar 31 2020 05:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99358 * 2 1 4 4 O 1.43749 * 109.87669 * 121.08187 * 2 1 3 5 5 C 1.44373 * 106.97395 * 145.93922 * 4 2 1 6 6 H 1.08996 * 110.62442 * 78.59698 * 5 4 2 7 7 C 1.53006 * 110.61699 * 201.43909 * 5 4 2 8 8 C 1.55224 * 103.56573 * 320.01043 * 5 4 2 9 9 H 1.08999 * 111.02138 * 155.07918 * 8 5 4 10 10 C 1.53006 * 110.89218 * 278.74712 * 8 5 4 11 11 C 1.54097 * 109.88168 * 238.91069 * 2 1 3 12 12 H 1.09005 * 110.48559 * 119.73524 * 11 2 1 13 13 C 1.50703 * 110.48596 * 357.22852 * 11 2 1 14 14 O 1.20828 * 119.99639 * 300.38342 * 13 11 2 15 15 O 1.34221 * 120.00363 * 120.38173 * 13 11 2 16 16 C 1.45201 * 117.00419 * 181.55653 * 15 13 11 17 17 C 1.50700 * 112.84850 * 294.80119 * 16 15 13 18 18 H 1.08002 * 119.99708 * 108.22894 * 17 16 15 19 19 C 1.37873 * 120.00245 * 288.23610 * 17 16 15 20 20 N 1.31512 * 120.00252 * 182.89576 * 19 17 16 21 21 Si 1.86803 * 119.99899 * 3.16402 * 19 17 16 22 22 H 1.48505 * 109.47023 * 267.94986 * 21 19 17 23 23 H 1.48496 * 109.47063 * 27.94877 * 21 19 17 24 24 H 1.48500 * 109.47147 * 147.95420 * 21 19 17 25 25 C 1.53782 * 113.68976 * 66.07007 * 16 15 13 26 26 C 1.53781 * 87.08062 * 89.13042 * 25 16 15 27 27 C 1.53782 * 113.61707 * 163.60772 * 16 15 13 28 28 H 1.08999 * 109.47571 * 181.08411 * 1 2 3 29 29 H 1.09001 * 109.47107 * 301.09219 * 1 2 3 30 30 H 1.09004 * 109.46910 * 61.08532 * 1 2 3 31 31 H 1.09006 * 109.46918 * 58.54486 * 7 5 4 32 32 H 1.09004 * 109.47219 * 178.54373 * 7 5 4 33 33 H 1.08995 * 109.46886 * 298.54544 * 7 5 4 34 34 H 1.09005 * 109.46844 * 173.13030 * 10 8 5 35 35 H 1.08996 * 109.47038 * 293.13195 * 10 8 5 36 36 H 1.08995 * 109.46903 * 53.13234 * 10 8 5 37 37 H 0.97004 * 120.00402 * 180.27562 * 20 19 17 38 38 H 1.09008 * 113.61240 * 203.67903 * 25 16 15 39 39 H 1.08999 * 113.61169 * 334.57570 * 25 16 15 40 40 H 1.09000 * 113.61470 * 270.88335 * 26 25 16 41 41 H 1.08999 * 113.68786 * 139.99537 * 26 25 16 42 42 H 1.08993 * 113.61605 * 25.34730 * 27 16 15 43 43 H 1.09001 * 113.61309 * 156.25417 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 1.1578 5 6 3.2378 -1.3641 0.7649 6 1 4.0690 -0.6595 0.7384 7 6 3.5473 -2.5244 1.7130 8 6 2.9215 -1.8914 -0.6604 9 1 3.8348 -2.0202 -1.2412 10 6 2.1294 -3.1989 -0.5951 11 6 2.0540 -0.7483 -1.2410 12 1 2.6600 -0.0853 -1.8585 13 6 0.9074 -1.3105 -2.0411 14 8 0.1462 -2.0997 -1.5335 15 8 0.7316 -0.9345 -3.3176 16 6 -0.4136 -1.4895 -4.0166 17 6 -0.3185 -2.9819 -4.2030 18 1 -0.9567 -3.6393 -3.6311 19 6 0.5833 -3.5082 -5.1033 20 7 0.6270 -4.8066 -5.3077 21 14 1.7484 -2.3776 -6.0274 22 1 1.1333 -1.9824 -7.3200 23 1 2.0109 -1.1642 -5.2126 24 1 3.0271 -3.0875 -6.2845 25 6 -1.7666 -1.0240 -3.4531 26 6 -1.6772 0.1601 -4.4301 27 6 -0.7773 -0.7301 -5.3035 28 1 -0.3634 -1.0274 0.0194 29 1 -0.3633 0.5307 0.8800 30 1 -0.3633 0.4969 -0.8996 31 1 2.7167 -3.2303 1.7067 32 1 4.4558 -3.0295 1.3846 33 1 3.6900 -2.1402 2.7229 34 1 1.8153 -3.4838 -1.5992 35 1 2.7579 -3.9838 -0.1745 36 1 1.2508 -3.0602 0.0348 37 1 1.2642 -5.1773 -5.9382 38 1 -2.5880 -1.7074 -3.6692 39 1 -1.7247 -0.7293 -2.4046 40 1 -1.1638 1.0287 -4.0177 41 1 -2.6279 0.4136 -4.8992 42 1 0.0632 -0.1979 -5.7487 43 1 -1.3282 -1.3330 -6.0254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:55 Heat of formation + Delta-G solvation = -99.577500 kcal Electronic energy + Delta-G solvation = -24782.557261 eV Core-core repulsion = 21408.279296 eV Total energy + Delta-G solvation = -3374.277965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76294 -39.11902 -37.10100 -34.41699 -33.51258 -32.47419 -32.35776 -28.96387 -27.39214 -26.80089 -24.99987 -24.07701 -22.74339 -21.87732 -20.06611 -19.61795 -18.35410 -17.33767 -16.73942 -16.07314 -15.57675 -15.21000 -15.05678 -14.82137 -14.18894 -14.06593 -13.72397 -12.98317 -12.91188 -12.68598 -12.53343 -12.13542 -11.94900 -11.84174 -11.76336 -11.61072 -11.53644 -11.34728 -11.27206 -10.89872 -10.78415 -10.55221 -10.34618 -10.27110 -10.12363 -10.01606 -9.93617 -9.51415 -9.24080 -8.80167 -8.66871 -8.51555 -6.20270 -4.26079 3.13277 3.23206 3.33146 3.45580 3.64063 3.85055 4.36805 4.62467 4.79714 4.99433 5.01455 5.13300 5.22184 5.36698 5.40848 5.46584 5.48851 5.59103 5.62399 5.65810 5.74006 5.79621 5.89362 5.97423 6.01302 6.13974 6.17885 6.21764 6.23889 6.31180 6.51316 6.55525 6.58276 6.62155 6.72525 6.94584 6.96782 7.07319 7.22764 7.46397 7.82274 8.39832 8.87438 8.98795 9.42247 10.90281 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.007457 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.635053 B = 3753.899489 C = 4494.416788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.073 0.927 4 O -0.365 6.365 5 C 0.078 3.922 6 H 0.068 0.932 7 C -0.147 4.147 8 C -0.105 4.105 9 H 0.088 0.912 10 C -0.143 4.143 11 C -0.123 4.123 12 H 0.101 0.899 13 C 0.472 3.528 14 O -0.479 6.479 15 O -0.360 6.360 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.084 0.916 19 C 0.084 3.916 20 N -0.882 5.882 21 Si 0.862 3.138 22 H -0.277 1.277 23 H -0.239 1.239 24 H -0.292 1.292 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.130 4.130 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 9.668 8.227 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.039 3.961 3 H 0.091 0.909 4 O -0.284 6.284 5 C 0.020 3.980 6 H 0.085 0.915 7 C -0.204 4.204 8 C -0.124 4.124 9 H 0.106 0.894 10 C -0.200 4.200 11 C -0.143 4.143 12 H 0.119 0.881 13 C 0.314 3.686 14 O -0.366 6.366 15 O -0.277 6.277 16 C 0.160 3.840 17 C -0.547 4.547 18 H 0.102 0.898 19 C -0.121 4.121 20 N -0.519 5.519 21 Si 0.689 3.311 22 H -0.203 1.203 23 H -0.162 1.162 24 H -0.219 1.219 25 C -0.175 4.175 26 C -0.182 4.182 27 C -0.167 4.167 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.141 9.277 8.452 13.215 hybrid contribution 0.888 0.464 -0.961 1.389 sum 5.028 9.742 7.490 13.278 Atomic orbital electron populations 1.22383 0.93262 1.05588 1.01593 1.22468 0.95892 0.94477 0.83258 0.90949 1.88882 1.39647 1.67459 1.32439 1.23166 0.87634 0.93800 0.93366 0.91453 1.21832 1.02408 0.97449 0.98726 1.22671 0.98419 0.95710 0.95551 0.89399 1.22004 0.99690 0.93826 1.04480 1.22551 0.96030 0.98988 0.96726 0.88093 1.22275 0.85104 0.79852 0.81412 1.90558 1.44849 1.30686 1.70477 1.86510 1.49682 1.67313 1.24226 1.21106 0.81012 0.93319 0.88599 1.21041 1.22376 0.88518 1.22758 0.89782 1.25029 0.96244 0.94840 0.95985 1.69922 1.35887 1.11344 1.34795 0.87149 0.80614 0.82655 0.80721 1.20319 1.16229 1.21913 1.23256 0.99512 0.96800 0.97948 1.22907 0.99324 0.97183 0.98826 1.23186 0.98760 0.97829 0.96939 0.88480 0.92379 0.91665 0.90889 0.91251 0.92203 0.90767 0.93383 0.90460 0.92449 0.89500 0.92363 0.91110 0.92260 0.92430 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.33 37.16 0.31 -2.36 16 2 C 0.10 1.44 4.05 -26.16 -0.11 1.34 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 O -0.36 -5.61 10.88 -35.23 -0.38 -5.99 16 5 C 0.08 1.03 3.79 -25.55 -0.10 0.93 16 6 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.15 -1.70 8.88 37.16 0.33 -1.37 16 8 C -0.10 -1.61 3.48 -88.49 -0.31 -1.92 16 9 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 10 C -0.14 -2.56 6.45 37.16 0.24 -2.32 16 11 C -0.12 -2.03 3.45 -90.25 -0.31 -2.34 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.47 9.76 3.98 36.01 0.14 9.90 16 14 O -0.48 -10.82 8.95 -18.75 -0.17 -10.99 16 15 O -0.36 -8.10 8.16 -39.23 -0.32 -8.42 16 16 C 0.19 4.51 0.10 -90.96 -0.01 4.50 16 17 C -0.51 -14.11 8.03 -34.44 -0.28 -14.39 16 18 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.08 2.37 5.46 -17.82 -0.10 2.27 16 20 N -0.88 -26.40 13.96 55.43 0.77 -25.63 16 21 Si 0.86 21.11 24.83 -169.99 -4.22 16.89 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.24 -5.65 5.67 56.52 0.32 -5.32 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C -0.14 -2.81 6.88 -25.92 -0.18 -2.99 16 26 C -0.14 -2.56 8.03 -25.92 -0.21 -2.77 16 27 C -0.13 -2.69 5.38 -25.92 -0.14 -2.83 16 28 H 0.10 1.77 5.77 -51.93 -0.30 1.47 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.01 7.49 -51.93 -0.39 0.62 16 31 H 0.07 0.93 6.48 -51.93 -0.34 0.59 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.63 6.67 -51.93 -0.35 1.29 16 35 H 0.05 0.74 7.10 -51.93 -0.37 0.37 16 36 H 0.08 1.48 6.91 -51.93 -0.36 1.12 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.09 1.79 8.09 -51.92 -0.42 1.37 16 39 H 0.06 1.17 7.17 -51.93 -0.37 0.79 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.17 6.68 -51.93 -0.35 0.82 16 43 H 0.10 2.01 8.09 -51.93 -0.42 1.58 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -30.55 323.07 -7.26 -37.81 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.10 Total: 5.81 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.71 Total: -14.34 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.77 Total: -25.63 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.87 Total: -25.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.22 Total: 16.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.55 -7.26 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.765 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds