Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.33478 * 2 1 4 4 O 1.44433 * 110.37004 * 122.24785 * 2 1 3 5 5 C 1.44418 * 105.27337 * 159.45199 * 4 2 1 6 6 H 1.08995 * 110.47273 * 78.36933 * 5 4 2 7 7 C 1.53005 * 110.37316 * 200.65970 * 5 4 2 8 8 C 1.54485 * 104.80600 * 319.48944 * 5 4 2 9 9 H 1.09002 * 110.50775 * 265.19508 * 8 5 4 10 10 C 1.52996 * 110.51266 * 142.62634 * 8 5 4 11 11 C 1.54485 * 110.46572 * 237.68111 * 2 1 3 12 12 H 1.08996 * 110.51167 * 335.79564 * 11 2 1 13 13 C 1.50700 * 110.50896 * 98.50183 * 11 2 1 14 14 O 1.20828 * 119.99843 * 27.62865 * 13 11 2 15 15 O 1.34228 * 120.00308 * 207.63214 * 13 11 2 16 16 C 1.45199 * 117.00325 * 184.81263 * 15 13 11 17 17 C 1.50707 * 112.84427 * 292.22963 * 16 15 13 18 18 H 1.07996 * 119.99603 * 118.64026 * 17 16 15 19 19 C 1.37874 * 119.99752 * 298.62820 * 17 16 15 20 20 N 1.31506 * 120.00613 * 3.53584 * 19 17 16 21 21 Si 1.86801 * 119.99658 * 183.52785 * 19 17 16 22 22 H 1.48502 * 109.46775 * 90.00425 * 21 19 17 23 23 H 1.48503 * 109.47466 * 210.00493 * 21 19 17 24 24 H 1.48504 * 109.47363 * 330.01069 * 21 19 17 25 25 C 1.53777 * 113.61427 * 160.92610 * 16 15 13 26 26 C 1.53786 * 87.08097 * 220.01656 * 25 16 15 27 27 C 1.53777 * 113.61373 * 63.42534 * 16 15 13 28 28 H 1.09001 * 109.47159 * 299.21121 * 1 2 3 29 29 H 1.09007 * 109.46838 * 59.20530 * 1 2 3 30 30 H 1.08997 * 109.47621 * 179.20082 * 1 2 3 31 31 H 1.08994 * 109.47291 * 175.38250 * 7 5 4 32 32 H 1.09001 * 109.46610 * 295.38248 * 7 5 4 33 33 H 1.09000 * 109.47057 * 55.38209 * 7 5 4 34 34 H 1.08999 * 109.47638 * 64.70383 * 10 8 5 35 35 H 1.08995 * 109.47321 * 184.70523 * 10 8 5 36 36 H 1.08999 * 109.47062 * 304.70690 * 10 8 5 37 37 H 0.97003 * 120.00660 * 185.01941 * 20 19 17 38 38 H 1.09002 * 113.61415 * 334.56117 * 25 16 15 39 39 H 1.09000 * 113.61680 * 105.46938 * 25 16 15 40 40 H 1.09000 * 113.61050 * 270.88523 * 26 25 16 41 41 H 1.08994 * 113.61561 * 139.97918 * 26 25 16 42 42 H 1.09000 * 113.61115 * 254.52666 * 27 16 15 43 43 H 1.08996 * 113.61765 * 25.34820 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 8 2.0328 -0.7225 1.1451 5 6 3.3881 -1.0840 0.8018 6 1 4.0535 -0.2296 0.9250 7 6 3.8618 -2.2553 1.6648 8 6 3.3207 -1.5033 -0.6835 9 1 3.2026 -2.5834 -0.7705 10 6 4.5744 -1.0408 -1.4286 11 6 2.0702 -0.7738 -1.2231 12 1 1.3314 -1.4928 -1.5769 13 6 2.4503 0.1805 -2.3258 14 8 2.7937 1.3075 -2.0578 15 8 2.4073 -0.2215 -3.6058 16 6 2.8886 0.7135 -4.6069 17 6 2.0062 1.9273 -4.7461 18 1 2.4036 2.9102 -4.5403 19 6 0.6918 1.7829 -5.1365 20 7 0.1885 0.5819 -5.3200 21 14 -0.3742 3.2933 -5.4045 22 1 -0.2623 3.7334 -6.8184 23 1 -1.7891 2.9609 -5.1000 24 1 0.0816 4.3862 -4.5084 25 6 3.2441 0.0509 -5.9483 26 6 4.4584 0.9930 -6.0022 27 6 4.3825 1.0506 -4.4673 28 1 -0.3633 0.5015 0.8970 29 1 -0.3633 0.5262 -0.8828 30 1 -0.3634 -1.0275 -0.0143 31 1 4.8535 -2.5690 1.3389 32 1 3.9040 -1.9438 2.7085 33 1 3.1654 -3.0875 1.5619 34 1 5.4467 -1.5567 -1.0273 35 1 4.4724 -1.2707 -2.4891 36 1 4.6974 0.0346 -1.3001 37 1 -0.7128 0.4810 -5.6643 38 1 3.5120 -1.0018 -5.8578 39 1 2.5123 0.2365 -6.7345 40 1 4.2494 1.9473 -6.4858 41 1 5.3643 0.5167 -6.3770 42 1 4.5696 2.0433 -4.0579 43 1 4.9613 0.2719 -3.9706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745371.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -122.655100 kcal Electronic energy + Delta-G solvation = -24375.731741 eV Core-core repulsion = 21000.453056 eV Total energy + Delta-G solvation = -3375.278685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38556 -38.79043 -36.90948 -34.18136 -33.60611 -32.46595 -32.29787 -29.25592 -27.20778 -26.16249 -24.61951 -23.74604 -22.86122 -21.61916 -20.94313 -18.96812 -18.57724 -17.01069 -16.21213 -15.76082 -15.52305 -15.17235 -14.82475 -14.73380 -14.17542 -13.86245 -13.41771 -13.23059 -12.96262 -12.57973 -12.34617 -12.16945 -12.10294 -11.74627 -11.62135 -11.54021 -11.39836 -11.14169 -11.03015 -10.92711 -10.81592 -10.51863 -10.40881 -10.29238 -10.21089 -9.90341 -9.84379 -9.54833 -9.22543 -8.80166 -8.55931 -8.53209 -6.12957 -4.25472 3.23729 3.31612 3.36697 3.40514 3.79286 4.12115 4.33664 4.67188 4.76075 4.98929 5.14908 5.27844 5.33489 5.40826 5.54098 5.56734 5.63663 5.65760 5.70420 5.74685 5.87745 5.88467 5.95456 6.02075 6.07847 6.11655 6.17601 6.25618 6.34642 6.39237 6.44545 6.48142 6.49090 6.61626 6.88734 7.05366 7.07633 7.26641 7.52746 7.75580 7.93886 8.32816 8.78813 9.20629 9.45848 10.91748 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.006737 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.475787 B = 4155.260389 C = 5147.380387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.089 0.911 4 O -0.370 6.370 5 C 0.074 3.926 6 H 0.071 0.929 7 C -0.144 4.144 8 C -0.103 4.103 9 H 0.090 0.910 10 C -0.159 4.159 11 C -0.119 4.119 12 H 0.105 0.895 13 C 0.479 3.521 14 O -0.513 6.513 15 O -0.340 6.340 16 C 0.242 3.758 17 C -0.512 4.512 18 H 0.067 0.933 19 C 0.076 3.924 20 N -0.861 5.861 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.109 4.109 26 C -0.132 4.132 27 C -0.160 4.160 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.262 0.738 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -5.667 7.725 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.107 0.893 4 O -0.290 6.290 5 C 0.017 3.983 6 H 0.089 0.911 7 C -0.201 4.201 8 C -0.122 4.122 9 H 0.108 0.892 10 C -0.216 4.216 11 C -0.139 4.139 12 H 0.124 0.876 13 C 0.322 3.678 14 O -0.402 6.402 15 O -0.256 6.256 16 C 0.208 3.792 17 C -0.549 4.549 18 H 0.085 0.915 19 C -0.130 4.130 20 N -0.497 5.497 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.197 4.197 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.353 -5.476 7.950 11.038 hybrid contribution -0.627 0.845 -0.462 1.149 sum 4.726 -4.631 7.488 9.992 Atomic orbital electron populations 1.21810 0.92862 1.02740 1.02812 1.22943 0.95344 0.96274 0.82727 0.89283 1.89088 1.26739 1.74929 1.38206 1.23046 0.85067 0.97260 0.92962 0.91116 1.21794 1.01160 0.97364 0.99769 1.22447 0.94325 1.00611 0.94803 0.89169 1.22051 0.96137 1.02391 1.01002 1.22509 0.99272 0.98005 0.94135 0.87631 1.22285 0.74641 0.86624 0.84297 1.90541 1.44655 1.20636 1.84402 1.86509 1.75317 1.48968 1.14771 1.21141 0.87925 0.87286 0.82819 1.20977 0.95100 0.91819 1.47035 0.91529 1.25051 0.97551 0.95960 0.94462 1.70060 1.16197 1.21158 1.42294 0.86610 0.79653 0.83343 0.78686 1.20336 1.21045 1.19564 1.22913 0.96282 0.96648 0.98861 1.22548 0.97433 1.00428 0.96586 1.23550 0.99487 1.00902 0.95783 0.91875 0.90561 0.91925 0.91238 0.92016 0.91790 0.92271 0.91282 0.91347 0.92793 0.92364 0.90755 0.90225 0.93030 0.91876 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.53 37.16 0.35 -1.94 16 2 C 0.08 1.47 3.42 -25.95 -0.09 1.38 16 3 H 0.09 1.71 6.88 -51.93 -0.36 1.35 16 4 O -0.37 -5.99 11.04 -35.23 -0.39 -6.37 16 5 C 0.07 1.04 3.48 -25.95 -0.09 0.95 16 6 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 7 C -0.14 -1.54 9.52 37.16 0.35 -1.19 16 8 C -0.10 -1.53 3.26 -89.05 -0.29 -1.83 16 9 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 10 C -0.16 -2.38 7.96 37.16 0.30 -2.09 16 11 C -0.12 -2.16 3.17 -90.20 -0.29 -2.45 16 12 H 0.11 1.89 7.86 -51.93 -0.41 1.48 16 13 C 0.48 10.75 4.49 36.01 0.16 10.91 16 14 O -0.51 -12.59 13.42 -18.75 -0.25 -12.84 16 15 O -0.34 -8.40 9.46 -39.25 -0.37 -8.77 16 16 C 0.24 5.98 0.47 -90.96 -0.04 5.93 16 17 C -0.51 -13.97 7.20 -34.44 -0.25 -14.22 16 18 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 19 C 0.08 2.05 5.35 -17.82 -0.10 1.96 16 20 N -0.86 -23.95 12.76 55.43 0.71 -23.24 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.11 -2.46 7.28 -25.92 -0.19 -2.65 16 26 C -0.13 -2.62 7.81 -25.91 -0.20 -2.82 16 27 C -0.16 -3.44 6.44 -25.92 -0.17 -3.61 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.14 6.59 -51.93 -0.34 0.80 16 36 H 0.07 1.16 6.97 -51.93 -0.36 0.80 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.80 8.01 -51.93 -0.42 1.38 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.42 8.08 -51.93 -0.42 1.00 16 43 H 0.06 1.19 7.36 -51.93 -0.38 0.81 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -29.83 341.89 -7.98 -37.81 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.27 Total: 3.81 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.53 Total: -11.66 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.71 Total: -23.24 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.01 Total: -27.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.83 -7.98 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745371.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.845 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds