Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48503 * 109.47303 * 269.99736 * 3 2 1 5 5 H 1.48501 * 109.47150 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.47356 * 149.99910 * 3 2 1 7 7 C 1.37874 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99707 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00640 * 180.02562 * 7 2 1 10 10 N 1.46494 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00467 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99262 * 5.10580 * 11 10 9 13 13 N 1.34763 * 120.00438 * 185.10922 * 11 10 9 14 14 C 1.47027 * 120.76143 * 4.04797 * 13 11 10 15 15 C 1.53157 * 108.87648 * 233.13306 * 14 13 11 16 16 C 1.53063 * 109.52580 * 305.81712 * 15 14 13 17 17 H 1.08996 * 109.50583 * 301.52116 * 16 15 14 18 18 O 1.42895 * 109.50467 * 181.38635 * 16 15 14 19 19 C 1.53361 * 109.25146 * 61.45646 * 16 15 14 20 20 H 1.08998 * 109.68344 * 177.99286 * 19 16 15 21 21 C 1.53068 * 108.77201 * 58.02996 * 19 16 15 22 22 C 1.52911 * 109.74966 * 182.23395 * 21 19 16 23 23 C 1.53058 * 109.27209 * 60.58711 * 22 21 19 24 24 C 1.52968 * 109.20776 * 299.29932 * 23 22 21 25 25 C 1.46750 * 120.75971 * 184.02929 * 13 11 10 26 26 H 1.08998 * 108.81020 * 244.87291 * 25 13 11 27 27 H 0.96998 * 119.99712 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46786 * 59.99697 * 9 7 2 29 29 H 1.09006 * 109.46371 * 299.99967 * 9 7 2 30 30 H 0.97002 * 120.00067 * 359.97438 * 10 9 7 31 31 H 1.09000 * 109.57291 * 113.31153 * 14 13 11 32 32 H 1.09003 * 109.56754 * 352.94749 * 14 13 11 33 33 H 1.08994 * 109.46369 * 185.79995 * 15 14 13 34 34 H 1.08998 * 109.46084 * 65.83376 * 15 14 13 35 35 H 0.96702 * 113.99761 * 60.00251 * 18 16 15 36 36 H 1.08998 * 109.42164 * 302.31861 * 21 19 16 37 37 H 1.09000 * 109.42327 * 62.14966 * 21 19 16 38 38 H 1.09006 * 109.50457 * 180.53025 * 22 21 19 39 39 H 1.09002 * 109.50793 * 300.64611 * 22 21 19 40 40 H 1.09001 * 109.51192 * 59.22595 * 23 22 21 41 41 H 1.09007 * 109.51450 * 179.38446 * 23 22 21 42 42 H 1.08995 * 109.39718 * 179.89463 * 24 23 22 43 43 H 1.08998 * 109.40223 * 299.72148 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8216 0.0009 12 8 6.1143 -1.9015 0.0947 13 7 5.7751 -4.0876 -0.1031 14 6 4.8399 -5.2038 -0.3061 15 6 5.0959 -6.2661 0.7671 16 6 6.5732 -6.6662 0.7487 17 1 6.8351 -7.0462 -0.2387 18 8 6.8050 -7.6805 1.7282 19 6 7.4338 -5.4381 1.0698 20 1 8.4856 -5.7229 1.0937 21 6 7.0173 -4.8884 2.4363 22 6 7.8240 -3.6290 2.7544 23 6 7.5467 -2.5683 1.6864 24 6 7.9750 -3.1060 0.3199 25 6 7.2098 -4.3836 -0.0168 26 1 7.5458 -4.7774 -0.9760 27 1 -0.4849 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 3.3696 -3.3125 0.0010 31 1 4.9975 -5.6372 -1.2938 32 1 3.8153 -4.8412 -0.2238 33 1 4.4799 -7.1423 0.5651 34 1 4.8414 -5.8614 1.7466 35 1 6.2896 -8.4868 1.5890 36 1 5.9551 -4.6441 2.4203 37 1 7.2038 -5.6414 3.2021 38 1 7.5311 -3.2464 3.7322 39 1 8.8871 -3.8697 2.7609 40 1 6.4814 -2.3382 1.6698 41 1 8.1116 -1.6646 1.9154 42 1 7.7770 -2.3536 -0.4434 43 1 9.0411 -3.3320 0.3376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -46.142688 kcal Electronic energy + Delta-G solvation = -24238.297633 eV Core-core repulsion = 20898.629527 eV Total energy + Delta-G solvation = -3339.668107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20751 -38.43274 -36.49793 -35.37191 -34.15448 -32.31427 -31.79782 -30.40100 -29.46038 -27.50551 -24.75506 -23.34661 -22.95009 -21.84373 -20.72144 -20.18308 -18.55569 -17.52890 -17.29574 -16.43338 -15.86763 -15.71897 -15.27466 -14.95999 -14.43743 -14.20977 -14.11365 -13.61779 -13.38374 -12.96212 -12.85895 -12.62209 -12.32166 -12.23377 -12.20537 -11.94667 -11.71480 -11.61744 -10.98143 -10.96696 -10.82251 -10.73164 -10.09581 -10.02145 -9.90762 -9.88313 -9.82223 -9.46798 -8.74176 -8.70370 -8.19683 -7.89168 -6.20772 -4.22586 3.06811 3.27702 3.34977 3.43267 3.70007 4.03547 4.33919 4.40839 4.55467 4.71064 4.85596 4.88576 5.05367 5.15090 5.21128 5.31163 5.37329 5.45704 5.53548 5.61196 5.65548 5.71567 5.77887 5.86582 5.87460 6.00968 6.15900 6.28119 6.40341 6.46444 6.52929 6.65353 6.75826 6.95108 7.08201 7.12845 7.29497 7.42900 7.45529 7.53362 8.26115 8.67443 8.80030 9.20698 9.41102 10.91274 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.005094 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.470623 B = 5494.975038 C = 6121.656407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.238 3.762 10 N -0.725 5.725 11 C 0.693 3.307 12 O -0.576 6.576 13 N -0.630 5.630 14 C 0.115 3.885 15 C -0.171 4.171 16 C 0.110 3.890 17 H 0.054 0.946 18 O -0.564 6.564 19 C -0.089 4.089 20 H 0.082 0.918 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.105 4.105 25 C 0.174 3.826 26 H 0.064 0.936 27 H 0.267 0.733 28 H 0.023 0.977 29 H 0.017 0.983 30 H 0.389 0.611 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.374 0.626 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 -14.508 0.957 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.116 3.884 10 N -0.379 5.379 11 C 0.395 3.605 12 O -0.456 6.456 13 N -0.368 5.368 14 C -0.009 4.009 15 C -0.210 4.210 16 C 0.051 3.949 17 H 0.072 0.928 18 O -0.370 6.370 19 C -0.109 4.109 20 H 0.101 0.899 21 C -0.141 4.141 22 C -0.164 4.164 23 C -0.158 4.158 24 C -0.142 4.142 25 C 0.070 3.930 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.225 0.775 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.221 0.779 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.197 -13.202 1.236 19.426 hybrid contribution -0.487 -0.101 -0.253 0.558 sum 13.709 -13.302 0.983 19.128 Atomic orbital electron populations 1.69881 1.06232 1.27394 1.49604 1.24776 0.94765 0.99146 0.93892 0.86814 0.80635 0.83211 0.79000 1.19916 1.20990 1.18391 1.21086 0.88642 0.95092 1.53149 0.90468 1.19338 0.94779 0.77772 0.96550 1.45689 1.03952 1.10928 1.77360 1.15931 0.83328 0.82449 0.78765 1.90867 1.53531 1.44294 1.56928 1.47224 1.06539 1.05142 1.77939 1.21511 0.94136 0.87354 0.97914 1.22734 0.97318 0.99537 1.01384 1.21871 0.93897 0.88299 0.90816 0.92824 1.86535 1.69366 1.27698 1.53366 1.21600 0.99628 0.92960 0.96693 0.89933 1.21454 1.00418 0.96844 0.95385 1.21705 0.99085 0.96350 0.99309 1.22195 1.05309 0.96055 0.92267 1.21808 0.96104 0.95787 1.00493 1.20910 0.79885 0.95746 0.96445 0.91792 0.92298 0.95863 0.96499 0.77510 0.91541 0.89585 0.90749 0.89962 0.77888 0.91751 0.91997 0.92758 0.93129 0.87901 0.93231 0.88156 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.54 -14.74 9.83 -34.44 -0.34 -15.07 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 C 0.24 5.79 4.50 -5.20 -0.02 5.77 16 10 N -0.72 -14.59 5.45 -66.42 -0.36 -14.95 16 11 C 0.69 12.97 6.96 -86.93 -0.61 12.37 16 12 O -0.58 -12.12 9.75 5.29 0.05 -12.07 16 13 N -0.63 -9.09 2.39 -171.25 -0.41 -9.50 16 14 C 0.11 1.31 6.44 -3.67 -0.02 1.28 16 15 C -0.17 -1.66 5.33 -26.62 -0.14 -1.80 16 16 C 0.11 1.08 3.11 -26.51 -0.08 1.00 16 17 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 18 O -0.56 -5.46 12.73 -35.23 -0.45 -5.91 16 19 C -0.09 -1.04 2.33 -90.36 -0.21 -1.25 16 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.10 -1.35 4.54 -26.74 -0.12 -1.47 16 22 C -0.13 -1.73 5.92 -26.75 -0.16 -1.89 16 23 C -0.12 -1.94 4.79 -26.72 -0.13 -2.07 16 24 C -0.10 -1.54 4.79 -26.91 -0.13 -1.67 16 25 C 0.17 2.27 2.99 -67.93 -0.20 2.07 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 29 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 30 H 0.39 7.06 5.82 -40.82 -0.24 6.83 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.02 5.59 -51.93 -0.29 0.73 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 35 H 0.37 2.05 9.08 45.56 0.41 2.46 16 36 H 0.06 0.94 5.79 -51.93 -0.30 0.64 16 37 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.99 4.51 -54.62 -0.25 1.74 16 41 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.10 1.73 6.08 -51.88 -0.32 1.42 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -31.15 314.51 -8.44 -39.59 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.85 Total: 7.71 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.26 Total: -0.66 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.00 Total: -50.10 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.40 Total: -17.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.15 -8.44 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.550 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds