Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46684 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99873 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99797 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.84660 * 59.04452 * 16 15 14 18 18 C 1.54170 * 109.85664 * 179.97438 * 16 15 14 19 19 C 1.55005 * 104.26665 * 121.23523 * 18 16 15 20 20 C 1.53907 * 101.91791 * 19.79179 * 19 18 16 21 21 C 1.52637 * 115.55217 * 195.00144 * 20 19 18 22 22 C 1.53987 * 86.73715 * 217.58115 * 21 20 19 23 23 C 1.52650 * 115.54131 * 93.98592 * 20 19 18 24 24 O 1.43101 * 105.11182 * 324.50843 * 20 19 18 25 25 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 0.96995 * 120.00050 * 359.72237 * 11 10 9 31 31 H 0.96999 * 120.00050 * 0.02562 * 14 12 11 32 32 H 1.09005 * 109.47136 * 300.00071 * 15 14 12 33 33 H 1.08996 * 109.47174 * 59.99413 * 15 14 12 34 34 H 1.08992 * 110.47427 * 239.93568 * 18 16 15 35 35 H 1.09001 * 110.47201 * 2.41717 * 18 16 15 36 36 H 1.09000 * 110.93638 * 137.94454 * 19 18 16 37 37 H 1.08993 * 110.94559 * 261.63514 * 19 18 16 38 38 H 1.08994 * 113.67202 * 332.04316 * 21 20 19 39 39 H 1.09003 * 113.66893 * 103.12242 * 21 20 19 40 40 H 1.09006 * 113.58081 * 269.98514 * 22 21 20 41 41 H 1.08998 * 113.65260 * 139.20107 * 22 21 20 42 42 H 1.09003 * 113.66970 * 256.88692 * 23 20 19 43 43 H 1.09002 * 113.67089 * 27.87588 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4867 -2.6364 0.0022 12 6 6.1606 -3.8036 0.0018 13 8 5.5526 -4.8566 0.0009 14 7 7.5083 -3.8035 0.0023 15 6 8.2409 -5.0722 0.0025 16 6 9.7451 -4.7927 0.0038 17 1 10.0119 -4.2069 0.8834 18 6 10.5249 -6.1226 0.0046 19 6 11.3913 -6.0582 -1.2792 20 6 11.4067 -4.5482 -1.5768 21 6 11.8772 -4.1576 -2.9753 22 6 12.5668 -2.9518 -2.3108 23 6 12.5974 -3.7781 -1.0118 24 8 10.1107 -4.0789 -1.1919 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1502 -0.8892 29 1 3.6580 -3.1505 0.8908 30 1 5.9716 -1.7964 -0.0012 31 1 7.9933 -2.9635 0.0034 32 1 7.9772 -5.6440 0.8923 33 1 7.9779 -5.6437 -0.8876 34 1 11.1583 -6.1927 0.8888 35 1 9.8377 -6.9675 -0.0391 36 1 12.3987 -6.4278 -1.0881 37 1 10.9229 -6.6109 -2.0934 38 1 12.5729 -4.8704 -3.4179 39 1 11.0658 -3.8813 -3.6487 40 1 11.9338 -2.0665 -2.2497 41 1 13.5563 -2.7369 -2.7143 42 1 12.3604 -3.1991 -0.1191 43 1 13.4963 -4.3841 -0.8979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883606084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = -64.631318 kcal Electronic energy + Delta-G solvation = -21909.469112 eV Core-core repulsion = 18568.999278 eV Total energy + Delta-G solvation = -3340.469834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98817 -39.49812 -37.02024 -35.03613 -34.15564 -32.76986 -32.54829 -30.34179 -28.97703 -26.27950 -25.42824 -24.23432 -22.56790 -21.59687 -20.74687 -20.49376 -19.62355 -18.00158 -16.91598 -16.71345 -16.23046 -16.17118 -15.52033 -15.15460 -14.98232 -14.23931 -14.05193 -13.77293 -13.67387 -13.59898 -13.21780 -12.78792 -12.60482 -12.55559 -12.49387 -12.05312 -11.84969 -11.43838 -11.43086 -11.16911 -11.14332 -10.81437 -10.51501 -10.33632 -10.21678 -9.93499 -9.84249 -9.70831 -9.28093 -9.00147 -8.58857 -8.30419 -6.07364 -4.07047 2.98142 3.28386 3.29701 3.35761 3.37426 3.60865 4.02602 4.13561 4.27199 4.40886 4.41270 4.50722 4.53469 4.67459 4.78331 4.83131 5.07497 5.09994 5.24323 5.25702 5.34471 5.38471 5.47071 5.52908 5.56273 5.56556 5.68354 5.80013 5.89448 5.92791 6.14471 6.30771 6.55929 6.64557 6.72933 6.89120 7.11921 7.30169 7.37268 7.71870 8.37569 8.50806 8.96703 8.99825 9.52978 11.05777 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.002839 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.651974 B = 9860.848153 C =10631.710954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.748 5.748 15 C 0.144 3.856 16 C 0.067 3.933 17 H 0.076 0.924 18 C -0.147 4.147 19 C -0.139 4.139 20 C 0.082 3.918 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.155 4.155 24 O -0.341 6.341 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.363 -8.920 -1.804 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.405 5.405 15 C 0.019 3.981 16 C 0.008 3.992 17 H 0.094 0.906 18 C -0.185 4.185 19 C -0.177 4.177 20 C 0.042 3.958 21 C -0.166 4.166 22 C -0.174 4.174 23 C -0.193 4.193 24 O -0.260 6.260 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.453 -9.632 -1.900 31.046 hybrid contribution 0.877 1.596 0.136 1.827 sum 30.330 -8.036 -1.764 31.426 Atomic orbital electron populations 1.69905 1.06283 1.27001 1.50609 1.25000 0.94764 0.99136 0.94429 0.86743 0.80254 0.83534 0.78483 1.20246 1.21323 1.19091 1.20932 0.88678 0.94903 1.51432 0.90583 1.19798 0.97888 0.91497 0.96783 1.21362 0.74841 0.99771 1.01443 1.45504 1.08875 1.06264 1.78958 1.16024 0.81246 0.84819 0.78001 1.90897 1.67811 1.30603 1.58346 1.44986 1.04929 1.09098 1.81505 1.21345 0.87835 0.86138 1.02770 1.23083 0.94348 0.92938 0.88781 0.90622 1.22907 0.99052 0.97678 0.98895 1.22914 1.00728 0.96134 0.97891 1.22655 0.84533 0.91929 0.96689 1.22877 1.00298 0.98240 0.95210 1.22853 1.00879 0.97473 0.96162 1.23299 0.98148 0.99253 0.98578 1.88743 1.31666 1.62864 1.42718 0.92590 0.96034 0.96465 0.92220 0.92180 0.77584 0.76973 0.90552 0.91154 0.90210 0.89763 0.90060 0.90141 0.88852 0.90278 0.89750 0.91330 0.90850 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 10 C 0.15 3.19 5.61 -4.04 -0.02 3.17 16 11 N -0.74 -13.14 5.56 -65.22 -0.36 -13.51 16 12 C 0.70 12.55 8.57 -86.92 -0.74 11.80 16 13 O -0.60 -13.16 16.34 5.28 0.09 -13.08 16 14 N -0.75 -9.99 5.48 -65.22 -0.36 -10.35 16 15 C 0.14 1.65 5.15 -4.04 -0.02 1.63 16 16 C 0.07 0.58 3.51 -26.12 -0.09 0.48 16 17 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 18 C -0.15 -0.97 6.65 -25.06 -0.17 -1.13 16 19 C -0.14 -0.89 6.48 -25.20 -0.16 -1.05 16 20 C 0.08 0.63 1.12 -90.53 -0.10 0.53 16 21 C -0.13 -0.91 7.64 -26.40 -0.20 -1.11 16 22 C -0.14 -0.91 8.09 -25.72 -0.21 -1.12 16 23 C -0.16 -1.00 7.63 -26.40 -0.20 -1.20 16 24 O -0.34 -3.48 10.85 -35.23 -0.38 -3.86 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 27 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.39 5.81 8.49 -40.82 -0.35 5.46 16 31 H 0.40 4.43 8.43 -40.82 -0.34 4.08 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 36 H 0.08 0.39 7.96 -51.93 -0.41 -0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.44 8.01 -51.93 -0.42 0.03 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -34.09 349.50 -9.46 -43.55 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.35 Total: 4.18 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.47 Total: -1.97 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.05 Total: -50.82 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.30 Total: -16.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.09 -9.46 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883606084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.080 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds