Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00447 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99436 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00030 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99808 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46933 * 180.02562 * 15 14 12 17 17 H 1.08996 * 110.29518 * 305.70185 * 16 15 14 18 18 C 1.54542 * 110.33063 * 183.55404 * 16 15 14 19 19 C 1.54720 * 104.07292 * 217.44938 * 18 16 15 20 20 C 1.53558 * 103.74844 * 0.69975 * 19 18 16 21 21 C 1.52812 * 115.45926 * 253.20420 * 20 19 18 22 22 C 1.53957 * 86.79088 * 217.65926 * 21 20 19 23 23 C 1.52800 * 115.48619 * 152.50151 * 20 19 18 24 24 O 1.43441 * 106.20238 * 22.75219 * 20 19 18 25 25 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 27 27 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 28 28 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 29 29 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 30 30 H 0.97006 * 119.99755 * 359.97438 * 11 10 9 31 31 H 0.97002 * 120.00325 * 0.02562 * 14 12 11 32 32 H 1.08998 * 109.47348 * 300.00944 * 15 14 12 33 33 H 1.09005 * 109.46494 * 60.00495 * 15 14 12 34 34 H 1.09006 * 110.51026 * 336.09731 * 18 16 15 35 35 H 1.09006 * 110.51286 * 98.66498 * 18 16 15 36 36 H 1.08999 * 110.56618 * 119.26204 * 19 18 16 37 37 H 1.08992 * 110.56964 * 241.98133 * 19 18 16 38 38 H 1.09000 * 113.66726 * 332.13503 * 21 20 19 39 39 H 1.09003 * 113.66105 * 103.18555 * 21 20 19 40 40 H 1.08998 * 113.58692 * 270.12477 * 22 21 20 41 41 H 1.08996 * 113.58990 * 139.30610 * 22 21 20 42 42 H 1.09001 * 113.65778 * 256.79079 * 23 20 19 43 43 H 1.09006 * 113.66522 * 27.83741 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 2.1866 -6.0980 -0.0024 13 8 3.4025 -6.0980 -0.0019 14 7 1.5127 -7.2652 -0.0023 15 6 2.2451 -8.5340 -0.0033 16 6 1.2508 -9.6968 -0.0037 17 1 0.5520 -9.5970 0.8267 18 6 2.0012 -11.0449 0.0851 19 6 1.1865 -11.9900 -0.8298 20 6 0.0612 -11.0951 -1.3692 21 6 -1.3252 -11.3576 -0.7825 22 6 -1.8790 -11.0820 -2.1923 23 6 -0.4979 -11.4929 -2.7345 24 8 0.5354 -9.7458 -1.2595 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 0.8880 27 1 0.6246 -2.5563 -0.8919 28 1 2.8725 -3.6039 -0.8910 29 1 2.8713 -3.6047 0.8890 30 1 0.5427 -4.9308 -0.0020 31 1 0.5426 -7.2652 -0.0024 32 1 2.8713 -8.5913 -0.8937 33 1 2.8724 -8.5920 0.8863 34 1 3.0208 -10.9396 -0.2858 35 1 2.0052 -11.4130 1.1111 36 1 1.8061 -12.3603 -1.6466 37 1 0.7765 -12.8201 -0.2548 38 1 -1.4715 -12.3846 -0.4480 39 1 -1.6326 -10.6211 -0.0400 40 1 -2.1225 -10.0342 -2.3681 41 1 -2.6816 -11.7586 -2.4856 42 1 -0.1443 -10.8645 -3.5519 43 1 -0.4114 -12.5581 -2.9492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883606085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = -69.106292 kcal Electronic energy + Delta-G solvation = -21815.048450 eV Core-core repulsion = 18474.384567 eV Total energy + Delta-G solvation = -3340.663883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91545 -39.42635 -36.93069 -34.92086 -34.11085 -32.78806 -32.49241 -30.03940 -28.71453 -26.20599 -25.33977 -24.24768 -22.45336 -21.49907 -20.97011 -20.39776 -19.64150 -17.96952 -16.87985 -16.31458 -16.14472 -16.00279 -15.46736 -15.10100 -14.86478 -14.47957 -14.07775 -13.70712 -13.51808 -13.43398 -13.32118 -12.76928 -12.49779 -12.36927 -12.24250 -12.02753 -11.69988 -11.31559 -11.15088 -11.11550 -10.98122 -10.79968 -10.61481 -10.50273 -10.25913 -9.89798 -9.85711 -9.50717 -9.23187 -8.95160 -8.43756 -8.17632 -6.05387 -4.07923 3.06594 3.34014 3.34260 3.37711 3.41844 3.67752 4.08329 4.15229 4.29722 4.43012 4.45514 4.57187 4.61618 4.74807 4.83177 4.86909 5.07997 5.13837 5.27834 5.31551 5.38876 5.42602 5.50097 5.57537 5.60303 5.61930 5.71387 5.82246 5.91771 5.98072 6.35698 6.45653 6.61604 6.70212 6.83444 7.07479 7.31417 7.61925 7.68514 7.94081 8.30692 8.50967 8.97056 9.07191 9.56529 11.06314 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.002588 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.055235 B =10818.252444 C =11450.943518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.601 6.601 14 N -0.750 5.750 15 C 0.149 3.851 16 C 0.064 3.936 17 H 0.076 0.924 18 C -0.147 4.147 19 C -0.138 4.138 20 C 0.079 3.921 21 C -0.156 4.156 22 C -0.136 4.136 23 C -0.129 4.129 24 O -0.339 6.339 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.393 0.607 31 H 0.396 0.604 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -27.686 -1.101 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.480 6.480 14 N -0.407 5.407 15 C 0.024 3.976 16 C 0.006 3.994 17 H 0.094 0.906 18 C -0.185 4.185 19 C -0.176 4.176 20 C 0.039 3.961 21 C -0.194 4.194 22 C -0.174 4.174 23 C -0.166 4.166 24 O -0.258 6.258 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.230 0.770 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.522 -27.346 -1.252 27.491 hybrid contribution -0.516 0.786 0.165 0.955 sum -3.038 -26.559 -1.087 26.755 Atomic orbital electron populations 1.69955 1.06086 1.26919 1.50457 1.24996 0.94897 0.99385 0.95043 0.86566 0.79500 0.82645 0.78778 1.20106 1.21279 1.20119 1.21026 0.93243 0.90399 1.51264 0.92269 1.19320 0.94260 0.91065 0.97796 1.21579 0.95625 0.80450 1.00595 1.45518 1.09841 1.05304 1.78541 1.16048 0.85601 0.80495 0.77994 1.90880 1.11795 1.86733 1.58599 1.45016 1.09569 1.04460 1.81650 1.21183 0.93141 0.80398 1.02908 1.23319 0.93433 0.95049 0.87561 0.90598 1.22921 1.00462 0.94154 1.00977 1.22742 0.96996 0.98227 0.99586 1.22674 0.92784 0.83157 0.97497 1.23354 0.96009 1.02211 0.97796 1.22841 0.96546 1.02171 0.95825 1.22918 0.96026 1.01602 0.96089 1.89068 1.71381 1.26959 1.38380 0.92834 0.95992 0.95966 0.92825 0.92829 0.77394 0.77007 0.91002 0.90396 0.90022 0.90087 0.90334 0.90331 0.89334 0.90787 0.89659 0.91333 0.90331 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.14 5.61 -4.05 -0.02 3.11 16 11 N -0.74 -13.82 5.56 -65.23 -0.36 -14.18 16 12 C 0.70 13.00 8.57 -86.92 -0.74 12.26 16 13 O -0.60 -13.52 16.34 5.29 0.09 -13.43 16 14 N -0.75 -10.43 5.55 -65.22 -0.36 -10.79 16 15 C 0.15 1.77 5.27 -4.04 -0.02 1.75 16 16 C 0.06 0.59 3.33 -25.92 -0.09 0.50 16 17 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 18 C -0.15 -1.04 6.65 -25.02 -0.17 -1.20 16 19 C -0.14 -0.91 6.48 -25.54 -0.17 -1.07 16 20 C 0.08 0.64 1.13 -90.54 -0.10 0.54 16 21 C -0.16 -1.09 7.57 -26.33 -0.20 -1.29 16 22 C -0.14 -0.99 8.09 -25.74 -0.21 -1.19 16 23 C -0.13 -0.95 7.61 -26.34 -0.20 -1.15 16 24 O -0.34 -3.66 11.12 -35.23 -0.39 -4.05 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.39 6.38 8.49 -40.82 -0.35 6.04 16 31 H 0.40 4.64 8.49 -40.82 -0.35 4.30 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 38 H 0.09 0.48 7.97 -51.93 -0.41 0.07 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -33.38 353.35 -9.84 -43.22 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.38 Total: 4.08 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.47 Total: -1.04 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.01 Total: -50.78 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.31 Total: -17.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.38 -9.84 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883606085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.889 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds