Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48507 * 109.46485 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47182 * 299.99384 * 3 2 1 6 6 H 1.48500 * 109.47455 * 59.99756 * 3 2 1 7 7 C 1.37872 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99389 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47086 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00336 * 0.02562 * 11 10 9 13 13 N 1.34898 * 120.00142 * 179.97438 * 11 10 9 14 14 C 1.47725 * 121.67936 * 180.02562 * 13 11 10 15 15 C 1.52877 * 109.42977 * 69.38933 * 14 13 11 16 16 C 1.53031 * 109.55312 * 134.19305 * 15 14 13 17 17 C 1.52968 * 109.59590 * 216.59918 * 16 15 14 18 18 C 1.53014 * 109.62994 * 87.84619 * 17 16 15 19 19 N 1.47621 * 108.89440 * 298.69473 * 18 17 16 20 20 C 1.36076 * 116.95212 * 108.22035 * 19 18 17 21 21 O 1.21273 * 120.80825 * 8.31223 * 20 19 18 22 22 C 1.50756 * 118.91528 * 188.12504 * 20 19 18 23 23 C 1.47758 * 121.57367 * 0.66226 * 13 11 10 24 24 H 0.96994 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46885 * 59.99308 * 9 7 2 26 26 H 1.09002 * 109.46677 * 299.99816 * 9 7 2 27 27 H 1.08998 * 109.47624 * 59.99885 * 10 9 7 28 28 H 1.09002 * 109.47216 * 299.99610 * 10 9 7 29 29 H 1.09142 * 109.41291 * 309.45045 * 14 13 11 30 30 H 1.09041 * 109.55278 * 189.70938 * 14 13 11 31 31 H 1.08890 * 109.93752 * 13.85951 * 15 14 13 32 32 H 1.09127 * 109.38939 * 253.88748 * 15 14 13 33 33 H 1.09044 * 109.35779 * 96.66282 * 16 15 14 34 34 H 1.08962 * 109.61105 * 336.77746 * 16 15 14 35 35 H 1.09082 * 109.40684 * 207.76436 * 17 16 15 36 36 H 1.08968 * 109.55502 * 327.68150 * 17 16 15 37 37 H 1.08891 * 109.62298 * 59.08260 * 18 17 16 38 38 H 1.09094 * 109.41510 * 179.08487 * 18 17 16 39 39 H 0.97133 * 121.47765 * 289.20796 * 19 18 17 40 40 H 1.08882 * 109.53197 * 355.81515 * 22 20 19 41 41 H 1.09136 * 109.21900 * 236.21924 * 22 20 19 42 42 H 1.09128 * 109.46730 * 32.78865 * 23 13 11 43 43 H 1.09088 * 109.55318 * 152.58798 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1664 -6.1354 0.0008 14 6 1.4656 -7.4358 0.0008 15 6 0.7771 -7.6425 -1.3484 16 6 1.0522 -9.0612 -1.8518 17 6 1.2232 -9.0421 -3.3718 18 6 2.6869 -8.7652 -3.7210 19 7 3.0633 -7.4411 -3.1881 20 6 3.8998 -7.4232 -2.1150 21 8 4.4277 -8.4418 -1.7219 22 6 4.1662 -6.1121 -1.4201 23 6 3.6433 -6.1760 0.0142 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.7179 -7.4450 0.7959 30 1 2.1841 -8.2376 0.1737 31 1 1.1539 -6.9213 -2.0720 32 1 -0.2991 -7.5055 -1.2308 33 1 0.2135 -9.7068 -1.5895 34 1 1.9613 -9.4437 -1.3886 35 1 0.9305 -10.0098 -3.7816 36 1 0.5936 -8.2625 -3.7999 37 1 3.3194 -9.5363 -3.2837 38 1 2.8080 -8.7685 -4.8052 39 1 2.7175 -6.6209 -3.5769 40 1 3.6699 -5.3069 -1.9594 41 1 5.2414 -5.9254 -1.4051 42 1 4.0254 -5.3245 0.5799 43 1 3.9788 -7.1009 0.4854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889431917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = -89.119211 kcal Electronic energy + Delta-G solvation = -23464.616212 eV Core-core repulsion = 20123.084504 eV Total energy + Delta-G solvation = -3341.531709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33805 -39.01359 -36.56889 -35.66086 -33.86271 -33.38485 -31.19282 -30.69894 -30.01290 -26.42575 -24.93654 -24.20563 -22.82486 -21.06281 -20.98071 -20.31787 -18.45397 -17.40712 -16.88235 -16.41979 -16.11716 -15.61831 -15.37057 -15.06358 -14.55360 -14.42004 -13.94757 -13.82275 -13.52465 -13.12306 -12.82663 -12.64857 -12.44852 -12.19277 -12.09777 -11.81081 -11.59991 -11.43346 -11.11412 -11.08241 -10.98130 -10.93437 -10.60835 -10.56561 -10.02702 -9.85302 -9.65551 -9.17180 -9.06627 -8.98900 -8.47929 -8.33821 -5.98287 -4.02755 2.48968 3.13371 3.19177 3.23906 3.30756 3.38383 3.41170 4.44743 4.49940 4.67329 4.80993 4.82091 4.87085 5.03416 5.14402 5.17045 5.32932 5.36887 5.38790 5.47426 5.50234 5.61179 5.65155 5.69835 5.76577 5.83027 5.90190 6.02902 6.18362 6.19624 6.20987 6.28751 6.39681 6.71628 6.87480 7.37756 7.72384 7.75977 7.83588 8.04886 8.07967 8.36235 8.74431 9.06123 9.61136 11.12640 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.004089 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.527552 B = 6846.242235 C = 7170.542804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.515 3.485 12 O -0.527 6.527 13 N -0.631 5.631 14 C 0.116 3.884 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.137 4.137 18 C 0.105 3.895 19 N -0.733 5.733 20 C 0.528 3.472 21 O -0.545 6.545 22 C -0.165 4.165 23 C 0.122 3.878 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -17.933 -6.031 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.305 3.695 12 O -0.402 6.402 13 N -0.367 5.367 14 C -0.007 4.007 15 C -0.172 4.172 16 C -0.157 4.157 17 C -0.176 4.176 18 C -0.019 4.019 19 N -0.387 5.387 20 C 0.315 3.685 21 O -0.422 6.422 22 C -0.207 4.207 23 C -0.002 4.002 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.244 0.756 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.810 -18.492 -5.745 20.526 hybrid contribution 0.230 1.339 -0.282 1.387 sum 7.040 -17.153 -6.027 19.497 Atomic orbital electron populations 1.70010 1.06059 1.26468 1.50268 1.25021 0.94800 0.99212 0.95307 0.86556 0.80023 0.83904 0.77598 1.19730 1.21042 1.21023 1.21245 0.92925 0.90977 1.51280 0.92574 1.18902 0.93175 0.89417 0.98565 1.21907 1.00676 0.91973 1.02218 1.21518 0.88364 0.85107 0.74480 1.90672 1.14320 1.87111 1.48092 1.49006 1.06028 1.05909 1.75789 1.21844 0.96514 0.84713 0.97604 1.22114 1.01317 0.96598 0.97167 1.21737 1.01730 0.97030 0.95242 1.22031 0.96672 1.02010 0.96864 1.21752 0.95706 0.86079 0.98371 1.46644 1.49469 1.09324 1.33276 1.20922 0.77195 0.90925 0.79428 1.90666 1.50170 1.36287 1.65096 1.22265 1.04216 0.95915 0.98291 1.21649 0.80269 1.04282 0.94045 0.93011 0.95917 0.95881 0.90308 0.90430 0.91608 0.90542 0.90781 0.91616 0.92285 0.91472 0.91181 0.91479 0.88858 0.91446 0.75574 0.89185 0.87401 0.88841 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.48 4.33 -27.89 -0.12 -2.61 16 11 C 0.51 9.60 7.53 -10.93 -0.08 9.52 16 12 O -0.53 -12.09 15.73 5.55 0.09 -12.01 16 13 N -0.63 -8.91 2.45 -171.66 -0.42 -9.33 16 14 C 0.12 1.52 5.19 -3.43 -0.02 1.50 16 15 C -0.13 -1.66 4.36 -26.78 -0.12 -1.78 16 16 C -0.12 -1.20 5.29 -26.73 -0.14 -1.34 16 17 C -0.14 -1.15 5.77 -26.74 -0.15 -1.30 16 18 C 0.10 0.89 6.34 -3.42 -0.02 0.87 16 19 N -0.73 -6.86 3.64 -59.16 -0.22 -7.08 16 20 C 0.53 5.89 5.56 -10.37 -0.06 5.84 16 21 O -0.54 -7.61 15.96 5.56 0.09 -7.52 16 22 C -0.17 -1.65 6.04 -27.96 -0.17 -1.81 16 23 C 0.12 1.34 5.34 -3.45 -0.02 1.32 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.08 1.41 7.50 -51.93 -0.39 1.02 16 28 H 0.08 1.34 7.23 -51.93 -0.38 0.96 16 29 H 0.07 0.94 8.13 -51.85 -0.42 0.52 16 30 H 0.08 0.91 6.51 -51.91 -0.34 0.57 16 31 H 0.07 0.97 5.67 -51.99 -0.30 0.67 16 32 H 0.07 0.92 8.15 -51.86 -0.42 0.50 16 33 H 0.06 0.55 8.15 -51.90 -0.42 0.13 16 34 H 0.07 0.74 6.70 -51.95 -0.35 0.39 16 35 H 0.07 0.49 8.15 -51.88 -0.42 0.07 16 36 H 0.07 0.58 7.80 -51.95 -0.41 0.18 16 37 H 0.09 0.93 6.77 -51.99 -0.35 0.58 16 38 H 0.07 0.46 8.15 -51.88 -0.42 0.03 16 39 H 0.41 3.38 8.50 -40.77 -0.35 3.04 16 40 H 0.09 0.90 7.03 -52.00 -0.37 0.53 16 41 H 0.11 0.89 8.15 -51.85 -0.42 0.47 16 42 H 0.09 0.96 6.79 -51.86 -0.35 0.61 16 43 H 0.09 0.91 7.40 -51.88 -0.38 0.52 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -34.33 335.53 -7.99 -42.32 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.87 Total: 0.84 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.43 Total: -2.23 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.10 Total: -42.73 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.33 -7.99 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889431917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.803 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds