Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47024 * 2 1 4 4 C 1.50702 * 109.47477 * 240.00297 * 2 1 3 5 5 H 1.08005 * 119.99707 * 240.00313 * 4 2 1 6 6 C 1.37872 * 119.99927 * 59.99685 * 4 2 1 7 7 N 1.31512 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99977 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46816 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47174 * 119.99638 * 8 6 4 11 11 H 1.48495 * 109.46905 * 239.99958 * 8 6 4 12 12 O 1.45199 * 109.47275 * 119.99835 * 2 1 3 13 13 C 1.34232 * 117.00127 * 270.00164 * 12 2 1 14 14 O 1.20825 * 119.99807 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99931 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46860 * 180.02562 * 15 13 12 17 17 H 1.08994 * 109.43381 * 305.08868 * 16 15 13 18 18 C 1.53073 * 109.42869 * 185.22490 * 16 15 13 19 19 C 1.53353 * 109.07964 * 180.52628 * 18 16 15 20 20 C 1.52848 * 108.74554 * 54.84297 * 19 18 16 21 21 C 1.53355 * 113.54416 * 77.73348 * 20 19 18 22 22 C 1.53855 * 86.95433 * 89.52263 * 21 20 19 23 23 C 1.53330 * 113.58655 * 175.71512 * 20 19 18 24 24 C 1.52749 * 112.68512 * 306.78421 * 20 19 18 25 25 O 1.42868 * 109.43287 * 65.00086 * 16 15 13 26 26 H 1.09003 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47309 * 299.99767 * 1 2 3 28 28 H 1.08996 * 109.47004 * 60.00221 * 1 2 3 29 29 H 0.97001 * 119.99849 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47235 * 59.99857 * 15 13 12 31 31 H 1.09000 * 109.46957 * 300.00112 * 15 13 12 32 32 H 1.09000 * 109.53907 * 300.40393 * 18 16 15 33 33 H 1.08997 * 109.53504 * 60.64445 * 18 16 15 34 34 H 1.09001 * 109.58675 * 174.62478 * 19 18 16 35 35 H 1.09001 * 109.58986 * 295.06212 * 19 18 16 36 36 H 1.09006 * 113.63320 * 204.03323 * 21 20 19 37 37 H 1.08996 * 113.64066 * 335.00643 * 21 20 19 38 38 H 1.08997 * 113.60031 * 270.54234 * 22 21 20 39 39 H 1.08998 * 113.60783 * 139.66870 * 22 21 20 40 40 H 1.08995 * 113.63703 * 25.03362 * 23 20 19 41 41 H 1.09006 * 113.63299 * 155.91633 * 23 20 19 42 42 H 1.09004 * 109.53070 * 293.74559 * 24 20 19 43 43 H 1.09003 * 109.53084 * 173.53955 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 3.1467 -2.2868 -3.6038 10 1 1.1663 -1.5866 -4.8161 11 1 3.1466 -0.1871 -4.8164 12 8 2.0140 -0.6844 1.1856 13 6 2.2171 0.0641 2.2811 14 8 1.9973 1.2518 2.2506 15 6 2.7194 -0.5770 3.5492 16 6 2.8632 0.4891 4.6372 17 1 3.5009 1.2947 4.2735 18 6 3.4954 -0.1368 5.8829 19 6 3.6236 0.9349 6.9723 20 6 2.2488 1.5582 7.2125 21 6 1.3194 0.6828 8.0621 22 6 1.9070 1.3960 9.2922 23 6 2.2286 2.5763 8.3588 24 6 1.6011 2.0696 5.9272 25 8 1.5745 1.0129 4.9627 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7095 1.1618 -3.4844 30 1 3.6885 -1.0399 3.3632 31 1 2.0106 -1.3373 3.8774 32 1 2.8640 -0.9490 6.2433 33 1 4.4834 -0.5243 5.6347 34 1 3.9839 0.4779 7.8939 35 1 4.3224 1.7054 6.6464 36 1 0.2606 0.8871 7.9030 37 1 1.5582 -0.3797 8.0175 38 1 2.7925 0.9072 9.6984 39 1 1.1655 1.6326 10.0552 40 1 3.1979 3.0353 8.5528 41 1 1.4224 3.3058 8.2811 42 1 2.1799 2.9060 5.5352 43 1 0.5828 2.3967 6.1374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892690176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -132.354331 kcal Electronic energy + Delta-G solvation = -22820.728160 eV Core-core repulsion = 19445.028885 eV Total energy + Delta-G solvation = -3375.699275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68490 -39.35134 -37.36122 -35.50773 -33.31441 -33.14503 -31.12688 -29.49335 -27.79804 -25.91255 -25.27543 -24.66278 -23.09930 -21.61385 -20.89445 -19.39608 -18.44450 -16.81019 -16.63466 -16.49802 -15.77800 -15.72847 -15.33817 -14.90490 -14.67705 -14.20347 -14.10325 -13.50482 -13.21540 -12.80164 -12.70823 -12.49218 -12.43000 -11.88712 -11.71235 -11.54038 -11.36765 -11.25712 -11.16549 -11.05004 -11.01259 -10.74795 -10.57967 -10.34525 -10.29308 -10.24166 -10.13288 -9.49125 -9.41389 -9.16913 -8.82546 -8.45016 -6.14285 -4.20942 3.16863 3.25787 3.32237 3.37341 3.71988 3.80432 4.34401 4.36671 4.39258 4.42672 4.60858 4.81969 4.88708 4.96257 5.12407 5.18547 5.26589 5.41145 5.45187 5.49300 5.52716 5.56310 5.64118 5.66477 5.69905 5.75592 5.81089 5.84171 5.95513 6.02196 6.13824 6.21175 6.27827 6.73187 6.97426 7.00542 7.27004 7.37608 7.65971 7.80630 8.02748 8.21483 8.73567 8.98069 9.44587 10.93196 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046914 B = 0.003178 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.697562 B = 8808.176218 C = 9053.296878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.361 6.361 13 C 0.452 3.548 14 O -0.512 6.512 15 C -0.110 4.110 16 C 0.104 3.896 17 H 0.066 0.934 18 C -0.148 4.148 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.130 4.130 24 C 0.080 3.920 25 O -0.362 6.362 26 H 0.035 0.965 27 H 0.017 0.983 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -0.068 21.781 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.063 0.937 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.278 6.278 13 C 0.294 3.706 14 O -0.401 6.401 15 C -0.148 4.148 16 C 0.046 3.954 17 H 0.084 0.916 18 C -0.186 4.186 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.161 4.161 22 C -0.179 4.179 23 C -0.168 4.168 24 C 0.003 3.997 25 O -0.280 6.280 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.709 0.327 21.481 21.801 hybrid contribution 0.395 -0.146 -0.746 0.857 sum 4.104 0.181 20.734 21.137 Atomic orbital electron populations 1.22142 0.97656 1.00015 1.01374 1.20581 0.91368 0.93837 0.77899 0.93698 1.21090 1.32280 1.13376 0.88995 0.91320 1.24898 0.94992 0.95126 0.99073 1.69919 1.36223 1.22622 1.23971 0.86231 0.78612 0.79486 0.81867 1.19490 1.20733 1.20798 1.86469 1.76063 1.43801 1.21454 1.23154 0.75351 0.86131 0.85964 1.90598 1.48140 1.16938 1.84464 1.21391 1.04158 0.98910 0.90364 1.21779 0.85981 0.95156 0.92459 0.91646 1.22220 1.01669 0.98930 0.95766 1.21343 0.94997 0.98022 0.98862 1.22253 0.96596 0.97762 0.95321 1.22851 0.99055 0.99089 0.95071 1.22858 1.00876 0.97541 0.96661 1.22853 1.01975 0.96316 0.95618 1.22469 1.00903 0.89601 0.86707 1.88034 1.27513 1.52293 1.60200 0.94544 0.96419 0.88388 0.92517 0.87033 0.87650 0.90748 0.90557 0.91298 0.91479 0.89987 0.91411 0.90381 0.91652 0.91433 0.89960 0.93185 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.15 0.35 -3.74 16 2 C 0.22 6.00 2.56 -27.89 -0.07 5.93 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.94 8.90 -34.44 -0.31 -15.25 16 5 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 O -0.36 -8.91 9.86 -39.26 -0.39 -9.30 16 13 C 0.45 9.76 7.81 36.01 0.28 10.04 16 14 O -0.51 -12.55 14.64 -24.06 -0.35 -12.91 16 15 C -0.11 -1.66 5.52 -27.88 -0.15 -1.82 16 16 C 0.10 1.45 2.13 -26.69 -0.06 1.39 16 17 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 18 C -0.15 -1.48 5.35 -26.51 -0.14 -1.63 16 19 C -0.09 -0.86 5.11 -26.63 -0.14 -1.00 16 20 C -0.12 -1.15 0.86 -154.36 -0.13 -1.28 16 21 C -0.12 -1.11 7.13 -26.10 -0.19 -1.29 16 22 C -0.14 -1.06 7.73 -25.84 -0.20 -1.26 16 23 C -0.13 -1.04 7.23 -26.11 -0.19 -1.23 16 24 C 0.08 1.00 6.02 37.03 0.22 1.22 16 25 O -0.36 -5.72 9.65 -49.69 -0.48 -6.20 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.54 7.34 -51.93 -0.38 0.16 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.07 0.62 7.62 -51.93 -0.40 0.22 16 38 H 0.08 0.54 7.64 -51.93 -0.40 0.14 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -32.26 342.26 -8.55 -40.80 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.27 Total: -0.44 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.82 Total: -8.29 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.63 Total: -25.18 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.22 Total: -28.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.26 -8.55 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.554 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds