Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47284 * 240.00356 * 2 1 3 5 5 H 1.07996 * 119.99719 * 239.99455 * 4 2 1 6 6 C 1.37874 * 119.99994 * 59.99948 * 4 2 1 7 7 N 1.31515 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46939 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47097 * 119.99739 * 8 6 4 11 11 H 1.48505 * 109.47240 * 239.99943 * 8 6 4 12 12 O 1.45202 * 109.47254 * 120.00323 * 2 1 3 13 13 C 1.34234 * 116.99922 * 269.99813 * 12 2 1 14 14 O 1.20825 * 119.99716 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47083 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.43506 * 55.08932 * 16 15 13 18 18 C 1.53076 * 109.43691 * 175.00244 * 16 15 13 19 19 C 1.53351 * 109.14612 * 179.45477 * 18 16 15 20 20 C 1.52866 * 108.74823 * 305.27254 * 19 18 16 21 21 C 1.53340 * 113.56678 * 184.14045 * 20 19 18 22 22 C 1.53856 * 86.95892 * 89.40524 * 21 20 19 23 23 C 1.53352 * 113.47993 * 282.07508 * 20 19 18 24 24 C 1.52752 * 112.74862 * 53.04921 * 20 19 18 25 25 O 1.42859 * 109.44082 * 295.21539 * 16 15 13 26 26 H 1.09009 * 109.46890 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47427 * 299.99284 * 1 2 3 28 28 H 1.08999 * 109.47165 * 60.00257 * 1 2 3 29 29 H 0.96998 * 120.00032 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46569 * 60.01082 * 15 13 12 31 31 H 1.08995 * 109.47659 * 300.00646 * 15 13 12 32 32 H 1.09002 * 109.53774 * 299.37904 * 18 16 15 33 33 H 1.09002 * 109.53677 * 59.53530 * 18 16 15 34 34 H 1.09001 * 109.58852 * 64.98143 * 19 18 16 35 35 H 1.09003 * 109.58862 * 185.41089 * 19 18 16 36 36 H 1.09001 * 113.63186 * 203.92263 * 21 20 19 37 37 H 1.09002 * 113.63064 * 334.88868 * 21 20 19 38 38 H 1.09001 * 113.60507 * 270.54054 * 22 21 20 39 39 H 1.08999 * 113.60397 * 139.67775 * 22 21 20 40 40 H 1.09002 * 113.63300 * 25.03368 * 23 20 19 41 41 H 1.09001 * 113.62998 * 155.99650 * 23 20 19 42 42 H 1.08997 * 109.52032 * 186.55874 * 24 20 19 43 43 H 1.08996 * 109.52592 * 66.36700 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 3.1475 -2.2861 -3.6039 10 1 1.1679 -1.5864 -4.8166 11 1 3.1473 -0.1854 -4.8161 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9974 1.2516 2.2506 15 6 2.7183 -0.5773 3.5494 16 6 2.8624 0.4887 4.6374 17 1 1.9139 1.0113 4.7611 18 6 3.2512 -0.1806 5.9581 19 6 3.4072 0.8947 7.0401 20 6 4.4048 1.9441 6.5498 21 6 4.7209 3.0236 7.5919 22 6 5.8546 2.1048 8.0796 23 6 5.8673 1.4979 6.6658 24 6 4.0436 2.5060 5.1761 25 8 3.8732 1.4235 4.2562 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1614 -3.4843 30 1 3.6873 -1.0408 3.3638 31 1 2.0089 -1.3371 3.8774 32 1 2.4728 -0.8844 6.2530 33 1 4.1947 -0.7120 5.8336 34 1 2.4430 1.3677 7.2270 35 1 3.7767 0.4382 7.9584 36 1 5.0730 3.9596 7.1584 37 1 3.9284 3.1673 8.3264 38 1 5.5448 1.4023 8.8533 39 1 6.7703 2.6387 8.3336 40 1 5.9961 0.4155 6.6560 41 1 6.5369 2.0114 5.9758 42 1 4.8445 3.1579 4.8272 43 1 3.1157 3.0733 5.2470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892690179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -132.204018 kcal Electronic energy + Delta-G solvation = -22818.997203 eV Core-core repulsion = 19443.304446 eV Total energy + Delta-G solvation = -3375.692757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67804 -39.35121 -37.35729 -35.50745 -33.31167 -33.14148 -31.12419 -29.49998 -27.79597 -25.90325 -25.28004 -24.66254 -23.09639 -21.60820 -20.89967 -19.39324 -18.44300 -16.81315 -16.61830 -16.48242 -15.77234 -15.75143 -15.33537 -14.87332 -14.67516 -14.19669 -14.11560 -13.52710 -13.19853 -12.81465 -12.71883 -12.48663 -12.34238 -11.98134 -11.63435 -11.59618 -11.36012 -11.25677 -11.13389 -11.06872 -11.00288 -10.76465 -10.57408 -10.33884 -10.29707 -10.23861 -10.12720 -9.48923 -9.41833 -9.16458 -8.82653 -8.44491 -6.13793 -4.20162 3.16710 3.26625 3.33071 3.38387 3.72144 3.81179 4.35131 4.37437 4.39836 4.43366 4.61583 4.82126 4.88773 4.96545 5.12426 5.19221 5.26815 5.41501 5.45373 5.49539 5.53195 5.57157 5.63935 5.66568 5.70313 5.76208 5.81374 5.84936 5.95867 6.02471 6.14164 6.21403 6.28557 6.70480 6.93557 6.98102 7.25899 7.38778 7.66198 7.79957 8.02430 8.21488 8.74080 8.98430 9.45294 10.93796 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036596 B = 0.003250 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.924791 B = 8614.177812 C = 8732.821318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 O -0.361 6.361 13 C 0.452 3.548 14 O -0.512 6.512 15 C -0.111 4.111 16 C 0.105 3.895 17 H 0.065 0.935 18 C -0.148 4.148 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.123 4.123 24 C 0.080 3.920 25 O -0.361 6.361 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 0.312 21.117 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 O -0.278 6.278 13 C 0.294 3.706 14 O -0.401 6.401 15 C -0.148 4.148 16 C 0.047 3.953 17 H 0.083 0.917 18 C -0.186 4.186 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.161 4.161 24 C 0.003 3.997 25 O -0.280 6.280 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.135 0.755 20.732 21.634 hybrid contribution 0.042 -0.207 -0.634 0.668 sum 6.176 0.548 20.098 21.033 Atomic orbital electron populations 1.22153 0.97717 0.99986 1.01316 1.20587 0.91241 0.93964 0.77958 0.93599 1.21089 1.32219 1.13371 0.88985 0.91306 1.24896 0.94994 0.95125 0.99078 1.69915 1.36264 1.22663 1.23970 0.86228 0.78603 0.79502 0.81846 1.19476 1.20763 1.20770 1.86469 1.76075 1.43751 1.21486 1.23150 0.75152 0.86118 0.86176 1.90598 1.48103 1.16744 1.84683 1.21390 1.04208 0.98342 0.90902 1.21773 0.92007 0.89659 0.91910 0.91718 1.22219 1.02866 0.98397 0.95114 1.21343 0.98467 0.95418 0.97969 1.22260 0.96199 0.97084 0.96403 1.22854 0.98667 0.97193 0.98038 1.22858 0.98778 0.99094 0.97213 1.22854 0.95580 1.01031 0.96617 1.22465 1.00877 0.89009 0.87315 1.88042 1.56770 1.36437 1.46716 0.94516 0.96606 0.88323 0.92526 0.87557 0.87122 0.90604 0.90726 0.91517 0.91286 0.89953 0.91438 0.90393 0.91651 0.91405 0.89963 0.89058 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.98 2.56 -27.88 -0.07 5.91 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.99 8.90 -34.44 -0.31 -15.30 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 O -0.36 -8.91 9.86 -39.27 -0.39 -9.30 16 13 C 0.45 9.77 7.81 36.00 0.28 10.05 16 14 O -0.51 -12.56 14.63 -24.11 -0.35 -12.91 16 15 C -0.11 -1.67 5.52 -27.89 -0.15 -1.82 16 16 C 0.10 1.45 2.13 -26.69 -0.06 1.40 16 17 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 18 C -0.15 -1.49 5.35 -26.51 -0.14 -1.63 16 19 C -0.09 -0.86 5.11 -26.62 -0.14 -1.00 16 20 C -0.12 -1.16 0.86 -154.35 -0.13 -1.29 16 21 C -0.13 -1.05 7.23 -26.11 -0.19 -1.24 16 22 C -0.14 -1.07 7.73 -25.84 -0.20 -1.27 16 23 C -0.12 -1.13 7.13 -26.10 -0.19 -1.31 16 24 C 0.08 1.01 6.02 37.03 0.22 1.23 16 25 O -0.36 -5.79 9.63 -49.90 -0.48 -6.27 16 26 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.54 7.34 -51.93 -0.38 0.16 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.08 0.54 7.64 -51.93 -0.40 0.15 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.63 7.63 -51.93 -0.40 0.23 16 41 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -32.37 342.27 -8.55 -40.92 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.27 Total: -0.50 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.82 Total: -8.33 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.63 Total: -25.24 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.22 Total: -28.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.37 -8.55 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.289 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds