Wall clock time and date at job start Tue Mar 31 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00241 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00166 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00187 * 180.02562 * 13 12 11 16 16 C 1.46507 * 119.99847 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.45758 * 32.39757 * 16 15 13 18 18 C 1.54474 * 110.51034 * 269.63802 * 16 15 13 19 19 O 1.44433 * 104.80352 * 265.33600 * 18 16 15 20 20 C 1.44423 * 105.27500 * 319.48849 * 19 18 16 21 21 C 1.54484 * 104.80116 * 40.51123 * 20 19 18 22 22 H 1.09002 * 110.50856 * 94.67150 * 21 20 19 23 23 C 1.53001 * 110.51004 * 217.37293 * 21 20 19 24 24 C 1.52998 * 117.50267 * 243.38949 * 23 21 20 25 25 C 1.52999 * 117.49818 * 174.72910 * 23 21 20 26 26 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 32 32 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 33 33 H 0.97010 * 119.99910 * 359.97438 * 12 11 10 34 34 H 0.96996 * 120.00041 * 359.97438 * 15 13 12 35 35 H 1.09000 * 110.37541 * 24.16377 * 18 16 15 36 36 H 1.09000 * 110.37239 * 146.50666 * 18 16 15 37 37 H 1.08999 * 110.37518 * 281.68750 * 20 19 18 38 38 H 1.08999 * 110.37374 * 159.34269 * 20 19 18 39 39 H 1.09000 * 115.55083 * 29.06363 * 23 21 20 40 40 H 1.08999 * 117.49773 * 0.02562 * 24 23 21 41 41 H 1.08997 * 117.50109 * 145.02289 * 24 23 21 42 42 H 1.09005 * 117.50157 * 214.98249 * 25 23 21 43 43 H 1.09002 * 117.50020 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7876 -7.5935 -0.0030 15 7 2.8588 -8.3957 -0.0030 16 6 2.3704 -9.7770 -0.0037 17 1 1.4306 -9.8485 -0.5513 18 6 2.1980 -10.2908 1.4428 19 8 3.4333 -10.9777 1.7401 20 6 3.7676 -11.6985 0.5341 21 6 3.4267 -10.7243 -0.6153 22 1 4.3122 -10.1650 -0.9172 23 6 2.8395 -11.4846 -1.8061 24 6 3.6272 -11.4608 -3.1175 25 6 2.3295 -10.6594 -2.9892 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8533 -5.0451 0.8886 32 1 0.8538 -5.0445 -0.8914 33 1 3.3859 -5.9234 -0.0021 34 1 3.8124 -8.2185 -0.0026 35 1 2.0542 -9.4552 2.1278 36 1 1.3563 -10.9808 1.5027 37 1 3.1665 -12.6043 0.4544 38 1 4.8294 -11.9443 0.5209 39 1 2.2993 -12.3988 -1.5601 40 1 4.5641 -10.9039 -3.1318 41 1 3.6050 -12.3592 -3.7344 42 1 1.4539 -11.0308 -3.5218 43 1 2.4118 -9.5747 -2.9190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892796722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:02 Heat of formation + Delta-G solvation = -67.261306 kcal Electronic energy + Delta-G solvation = -21839.946132 eV Core-core repulsion = 18499.362253 eV Total energy + Delta-G solvation = -3340.583879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65962 -39.22527 -37.24649 -35.51972 -34.37471 -33.28930 -31.41786 -30.62235 -28.78743 -26.52044 -23.69351 -23.38565 -22.80779 -22.19591 -20.78730 -20.54432 -20.18218 -18.06614 -17.10586 -16.60249 -16.37573 -16.02313 -15.43522 -15.34692 -14.93984 -14.53757 -14.39814 -14.01008 -13.92620 -13.77598 -12.74201 -12.33882 -12.28902 -12.11946 -11.88005 -11.82100 -11.79351 -11.66226 -11.46523 -10.92150 -10.72549 -10.57922 -10.56486 -10.40870 -10.25431 -10.10574 -9.86137 -9.44458 -9.15772 -9.10931 -8.61384 -8.37368 -6.01782 -4.04797 2.73131 3.28050 3.29983 3.34896 3.37489 3.41010 3.68567 4.08338 4.26476 4.37097 4.43709 4.45916 4.58513 4.74124 4.80249 4.94780 5.01882 5.10376 5.31220 5.32096 5.34107 5.41890 5.55794 5.58876 5.65512 5.71798 5.76538 5.81480 5.84457 6.18364 6.36285 6.48703 6.53197 6.62445 6.80068 7.02188 7.06116 7.64300 7.76886 7.97291 8.12308 8.38193 8.72403 9.02175 9.59440 11.09582 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.002586 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.369418 B =10823.744977 C =11142.628887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.700 3.300 14 O -0.592 6.592 15 N -0.742 5.742 16 C 0.139 3.861 17 H 0.109 0.891 18 C 0.032 3.968 19 O -0.374 6.374 20 C 0.052 3.948 21 C -0.099 4.099 22 H 0.091 0.909 23 C -0.149 4.149 24 C -0.176 4.176 25 C -0.174 4.174 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -25.684 -2.854 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.400 3.600 14 O -0.470 6.470 15 N -0.398 5.398 16 C 0.033 3.967 17 H 0.127 0.873 18 C -0.046 4.046 19 O -0.292 6.292 20 C -0.025 4.025 21 C -0.118 4.118 22 H 0.109 0.891 23 C -0.167 4.167 24 C -0.213 4.213 25 C -0.211 4.211 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.845 -25.728 -2.653 27.028 hybrid contribution 1.195 1.155 -0.231 1.678 sum 9.040 -24.573 -2.883 26.341 Atomic orbital electron populations 1.69975 1.06056 1.26579 1.50671 1.25033 0.94857 0.99314 0.95302 0.86527 0.80040 0.83772 0.77600 1.19769 1.21007 1.20994 1.21243 0.93019 0.90940 1.50775 0.92612 1.19032 0.93858 0.90821 0.97694 1.21890 0.99784 0.93331 1.00823 1.21520 0.91282 0.84136 1.01887 1.45398 1.10492 1.04437 1.79144 1.16030 0.85312 0.80803 0.77865 1.90921 1.14056 1.84102 1.57957 1.45172 1.08927 1.04561 1.81100 1.22153 0.98486 0.80106 0.95980 0.87291 1.23970 0.87162 0.96871 0.96575 1.89170 1.40662 1.65176 1.34213 1.23478 1.01594 0.94319 0.83147 1.22425 0.98320 0.96154 0.94916 0.89059 1.22239 1.04433 1.01252 0.88785 1.23043 0.96095 1.02706 0.99443 1.22993 0.97842 0.99071 1.01159 0.92977 0.96241 0.96237 0.92755 0.92800 0.91925 0.91957 0.77301 0.77071 0.88438 0.91284 0.91788 0.88806 0.87279 0.88736 0.88704 0.88543 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16 12 N -0.74 -10.65 5.56 -65.22 -0.36 -11.01 16 13 C 0.70 10.45 8.56 -86.93 -0.74 9.71 16 14 O -0.59 -11.29 15.99 5.29 0.08 -11.21 16 15 N -0.74 -7.95 5.09 -57.14 -0.29 -8.24 16 16 C 0.14 1.37 2.92 -66.36 -0.19 1.18 16 17 H 0.11 1.26 6.83 -51.93 -0.35 0.90 16 18 C 0.03 0.33 7.35 37.93 0.28 0.61 16 19 O -0.37 -3.87 11.65 -35.23 -0.41 -4.28 16 20 C 0.05 0.37 7.18 37.94 0.27 0.64 16 21 C -0.10 -0.71 3.06 -89.05 -0.27 -0.98 16 22 H 0.09 0.61 7.51 -51.93 -0.39 0.22 16 23 C -0.15 -0.98 5.08 -90.62 -0.46 -1.44 16 24 C -0.18 -1.09 10.19 -26.69 -0.27 -1.36 16 25 C -0.17 -1.33 9.66 -26.69 -0.26 -1.59 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.53 8.49 -40.82 -0.35 4.18 16 34 H 0.40 3.28 8.39 -40.82 -0.34 2.94 16 35 H 0.10 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.39 7.63 -51.93 -0.40 -0.01 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.64 7.79 -51.93 -0.40 0.23 16 40 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -33.01 355.33 -9.54 -42.54 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.26 Total: 2.77 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.36 Total: -6.27 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.08 Total: -45.40 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.33 Total: -15.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.01 -9.54 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892796722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.717 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds