Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.46954 * 149.99535 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99515 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00543 * 0.26795 * 13 12 11 15 15 N 1.34784 * 119.99547 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.45670 * 323.85122 * 16 15 13 18 18 C 1.54482 * 110.51256 * 86.44953 * 16 15 13 19 19 O 1.44426 * 104.80098 * 142.62140 * 18 16 15 20 20 C 1.44419 * 105.28000 * 319.49231 * 19 18 16 21 21 C 1.54483 * 104.80227 * 40.51289 * 20 19 18 22 22 H 1.08995 * 110.51923 * 94.66645 * 21 20 19 23 23 C 1.53003 * 110.51134 * 217.38087 * 21 20 19 24 24 C 1.53004 * 117.49625 * 243.38535 * 23 21 20 25 25 C 1.53001 * 117.50006 * 174.72924 * 23 21 20 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 30 30 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 31 31 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 32 32 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 33 33 H 0.96999 * 120.00076 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00044 * 359.97438 * 15 13 12 35 35 H 1.08993 * 110.37347 * 261.46014 * 18 16 15 36 36 H 1.09004 * 110.37051 * 23.68749 * 18 16 15 37 37 H 1.08992 * 110.37592 * 159.34143 * 20 19 18 38 38 H 1.09001 * 110.37687 * 281.68275 * 20 19 18 39 39 H 1.08997 * 115.54941 * 29.05074 * 23 21 20 40 40 H 1.08997 * 117.49864 * 0.02562 * 24 23 21 41 41 H 1.09000 * 117.49637 * 145.01160 * 24 23 21 42 42 H 1.09001 * 117.50012 * 214.97756 * 25 23 21 43 43 H 1.08999 * 117.49518 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0399 -4.0179 0.0015 13 6 7.3649 -4.2641 0.0029 14 8 8.1550 -3.3400 0.0097 15 7 7.8141 -5.5348 0.0027 16 6 9.2545 -5.8025 0.0037 17 1 9.7801 -5.0612 -0.5981 18 6 9.8020 -5.8139 1.4482 19 8 10.7957 -6.8619 1.4578 20 6 10.2268 -7.9331 0.6738 21 6 9.5405 -7.2287 -0.5176 22 1 10.2090 -7.1940 -1.3777 23 6 8.2346 -7.9387 -0.8802 24 6 8.1410 -8.5812 -2.2656 25 6 7.3600 -7.3004 -1.9612 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 3.6585 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8907 31 1 5.9142 -2.1230 0.8926 32 1 5.9156 -2.1225 -0.8873 33 1 5.4095 -4.7551 0.0008 34 1 7.1838 -6.2721 0.0020 35 1 10.2600 -4.8544 1.6879 36 1 9.0034 -6.0396 2.1549 37 1 11.0112 -8.6014 0.3187 38 1 9.4937 -8.4856 1.2615 39 1 7.7291 -8.4427 -0.0565 40 1 9.0099 -8.4985 -2.9185 41 1 7.5737 -9.5078 -2.3533 42 1 6.2791 -7.3848 -1.8489 43 1 7.7148 -6.3745 -2.4138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892796723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -56.290779 kcal Electronic energy + Delta-G solvation = -22179.310855 eV Core-core repulsion = 18839.202694 eV Total energy + Delta-G solvation = -3340.108161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88024 -39.22764 -37.40947 -35.62598 -34.29862 -33.29852 -31.60121 -30.76999 -28.84296 -26.90441 -23.80067 -23.26448 -22.76533 -22.52495 -21.03401 -20.42489 -19.78923 -18.32841 -17.10166 -16.67578 -16.49433 -16.03404 -15.68294 -15.25836 -14.95591 -14.58139 -14.39206 -14.21327 -13.98345 -13.82150 -12.88625 -12.69426 -12.42168 -12.35020 -11.97335 -11.90826 -11.86527 -11.83853 -11.21664 -11.07533 -10.89557 -10.65900 -10.45211 -10.24700 -10.16823 -10.01616 -9.83077 -9.68898 -9.24373 -9.23532 -8.70083 -8.56096 -6.07088 -4.05812 2.67857 3.19793 3.29662 3.31202 3.38825 3.43362 3.68866 4.01719 4.16150 4.35328 4.37858 4.44086 4.55826 4.68089 4.79648 4.88434 4.94233 5.00087 5.27085 5.27210 5.34013 5.43712 5.51287 5.52158 5.59048 5.65117 5.68345 5.71608 5.78395 6.02781 6.22370 6.36942 6.45979 6.53562 6.68102 6.81252 6.98320 7.22828 7.36171 7.75142 8.06843 8.49314 8.66974 8.96679 9.55283 11.06167 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.002929 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.322185 B = 9556.195219 C =10163.891733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.740 5.740 13 C 0.699 3.301 14 O -0.594 6.594 15 N -0.738 5.738 16 C 0.141 3.859 17 H 0.102 0.898 18 C 0.033 3.967 19 O -0.372 6.372 20 C 0.052 3.948 21 C -0.100 4.100 22 H 0.095 0.905 23 C -0.158 4.158 24 C -0.172 4.172 25 C -0.174 4.174 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.400 0.600 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.075 -19.608 -1.587 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.395 5.395 13 C 0.399 3.601 14 O -0.472 6.472 15 N -0.398 5.398 16 C 0.034 3.966 17 H 0.120 0.880 18 C -0.045 4.045 19 O -0.290 6.290 20 C -0.025 4.025 21 C -0.119 4.119 22 H 0.113 0.887 23 C -0.177 4.177 24 C -0.209 4.209 25 C -0.211 4.211 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.237 0.763 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.847 -18.595 -1.468 27.237 hybrid contribution -0.575 0.200 -0.142 0.625 sum 19.272 -18.396 -1.610 26.691 Atomic orbital electron populations 1.69912 1.06333 1.26969 1.51032 1.25030 0.94746 0.99256 0.94452 0.86774 0.80427 0.83494 0.78603 1.20238 1.21381 1.18845 1.21097 0.89328 0.94488 1.51091 0.91039 1.19499 0.97222 0.91470 0.96693 1.21703 0.90708 1.01002 1.01655 1.21517 0.95663 0.80030 1.01835 1.45318 1.04741 1.10065 1.79330 1.16054 0.83061 0.83129 0.77864 1.90918 1.55036 1.43281 1.57969 1.45352 1.07034 1.06581 1.80791 1.22036 0.81325 0.96418 0.96774 0.88024 1.23953 0.91956 0.92240 0.96341 1.89172 1.40244 1.26897 1.72705 1.23473 0.97962 0.90598 0.90471 1.22409 0.96027 0.93770 0.99703 0.88702 1.22211 0.97933 1.04069 0.93452 1.23062 1.03104 0.97262 0.97501 1.23079 0.98316 0.97469 1.02204 0.92694 0.96276 0.96726 0.92179 0.92164 0.91949 0.91981 0.77243 0.76263 0.88189 0.91776 0.88748 0.91904 0.87233 0.88678 0.88583 0.88288 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.06 5.27 -26.73 -0.14 -2.21 16 11 C 0.13 2.18 5.67 -4.04 -0.02 2.16 16 12 N -0.74 -9.86 5.56 -65.22 -0.36 -10.22 16 13 C 0.70 9.80 8.56 -86.92 -0.74 9.05 16 14 O -0.59 -10.84 16.06 5.29 0.08 -10.75 16 15 N -0.74 -7.26 3.77 -57.14 -0.22 -7.48 16 16 C 0.14 1.34 3.32 -66.36 -0.22 1.12 16 17 H 0.10 1.15 7.67 -51.93 -0.40 0.75 16 18 C 0.03 0.34 7.35 37.94 0.28 0.62 16 19 O -0.37 -3.82 11.65 -35.23 -0.41 -4.23 16 20 C 0.05 0.36 7.18 37.94 0.27 0.64 16 21 C -0.10 -0.68 3.31 -89.05 -0.29 -0.97 16 22 H 0.09 0.62 7.95 -51.93 -0.41 0.20 16 23 C -0.16 -0.90 3.88 -90.62 -0.35 -1.25 16 24 C -0.17 -0.94 10.19 -26.69 -0.27 -1.22 16 25 C -0.17 -1.12 7.85 -26.69 -0.21 -1.33 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.39 4.15 8.49 -40.82 -0.35 3.81 16 34 H 0.40 3.05 5.62 -40.82 -0.23 2.82 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.63 8.06 -51.93 -0.42 0.22 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.38 7.63 -51.93 -0.40 -0.01 16 39 H 0.11 0.54 7.79 -51.93 -0.40 0.14 16 40 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.82 7.97 -51.93 -0.41 0.40 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -33.15 346.43 -9.00 -42.15 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.17 Total: 2.09 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.25 Total: -6.89 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.20 Total: -44.62 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.33 Total: -14.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.15 -9.00 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892796723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.141 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds