Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48499 * 109.47136 * 269.99636 * 3 2 1 5 5 H 1.48503 * 109.47010 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.46954 * 149.99535 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47042 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99515 * 180.02562 * 12 11 10 14 14 O 1.21583 * 120.00543 * 0.26795 * 13 12 11 15 15 N 1.34784 * 119.99547 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99971 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.45670 * 323.85122 * 16 15 13 18 18 C 1.54482 * 110.51256 * 86.44953 * 16 15 13 19 19 O 1.44426 * 104.80098 * 142.62140 * 18 16 15 20 20 C 1.44419 * 105.28000 * 319.49231 * 19 18 16 21 21 C 1.54483 * 104.80227 * 40.51289 * 20 19 18 22 22 H 1.08995 * 110.51923 * 94.66645 * 21 20 19 23 23 C 1.53003 * 110.51134 * 217.38087 * 21 20 19 24 24 C 1.53004 * 117.49625 * 243.38535 * 23 21 20 25 25 C 1.53001 * 117.50006 * 174.72924 * 23 21 20 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 29 29 H 1.08996 * 109.47261 * 59.99679 * 10 9 7 30 30 H 1.09000 * 109.46870 * 300.00068 * 10 9 7 31 31 H 1.08996 * 109.47407 * 59.99517 * 11 10 9 32 32 H 1.09000 * 109.46986 * 299.99746 * 11 10 9 33 33 H 0.96999 * 120.00076 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00044 * 359.97438 * 15 13 12 35 35 H 1.08993 * 110.37347 * 261.46014 * 18 16 15 36 36 H 1.09004 * 110.37051 * 23.68749 * 18 16 15 37 37 H 1.08992 * 110.37592 * 159.34143 * 20 19 18 38 38 H 1.09001 * 110.37687 * 281.68275 * 20 19 18 39 39 H 1.08997 * 115.54941 * 29.05074 * 23 21 20 40 40 H 1.08997 * 117.49864 * 0.02562 * 24 23 21 41 41 H 1.09000 * 117.49637 * 145.01160 * 24 23 21 42 42 H 1.09001 * 117.50012 * 214.97756 * 25 23 21 43 43 H 1.08999 * 117.49518 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0399 -4.0179 0.0015 13 6 7.3649 -4.2641 0.0029 14 8 8.1550 -3.3400 0.0097 15 7 7.8141 -5.5348 0.0027 16 6 9.2545 -5.8025 0.0037 17 1 9.7801 -5.0612 -0.5981 18 6 9.8020 -5.8139 1.4482 19 8 10.7957 -6.8619 1.4578 20 6 10.2268 -7.9331 0.6738 21 6 9.5405 -7.2287 -0.5176 22 1 10.2090 -7.1940 -1.3777 23 6 8.2346 -7.9387 -0.8802 24 6 8.1410 -8.5812 -2.2656 25 6 7.3600 -7.3004 -1.9612 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 3.6585 -3.1502 -0.8892 30 1 3.6578 -3.1506 0.8907 31 1 5.9142 -2.1230 0.8926 32 1 5.9156 -2.1225 -0.8873 33 1 5.4095 -4.7551 0.0008 34 1 7.1838 -6.2721 0.0020 35 1 10.2600 -4.8544 1.6879 36 1 9.0034 -6.0396 2.1549 37 1 11.0112 -8.6014 0.3187 38 1 9.4937 -8.4856 1.2615 39 1 7.7291 -8.4427 -0.0565 40 1 9.0099 -8.4985 -2.9185 41 1 7.5737 -9.5078 -2.3533 42 1 6.2791 -7.3848 -1.8489 43 1 7.7148 -6.3745 -2.4138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892796723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -79.254129 kcal Electronic energy + Delta-G solvation = -22180.306620 eV Core-core repulsion = 18839.202694 eV Total energy + Delta-G solvation = -3341.103927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71096 -40.21586 -37.98266 -37.03340 -35.26682 -35.11741 -33.28118 -31.60384 -29.77274 -28.49811 -24.87490 -24.23157 -23.46724 -23.27349 -22.23320 -21.87180 -20.52509 -19.43007 -18.89248 -17.74594 -17.26164 -16.91033 -16.70380 -16.40415 -16.14878 -15.64695 -15.51623 -15.20616 -15.05873 -14.94411 -14.73715 -13.83063 -13.69583 -13.50706 -13.11965 -12.93489 -12.71531 -12.67565 -12.42327 -12.32675 -11.93415 -11.83708 -11.77491 -11.58040 -11.32745 -11.28052 -11.15859 -10.91306 -10.83877 -10.75436 -10.32866 -9.75345 -8.28875 -6.32477 1.37536 1.39337 1.51095 1.66583 2.13328 2.37054 2.73985 2.97847 3.07175 3.35023 3.48159 3.61790 3.79374 3.96417 4.09011 4.12221 4.20932 4.24250 4.31038 4.34550 4.45816 4.53076 4.75330 4.78682 4.83288 4.85195 4.92049 4.92390 4.97207 5.05745 5.07409 5.28097 5.28615 5.40829 5.43778 5.54274 5.57954 5.66121 5.79262 6.01322 6.28353 6.75706 7.10204 7.32478 7.58629 8.87551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.002929 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.322185 B = 9556.195219 C =10163.891733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.147 3.853 12 N -0.731 5.731 13 C 0.698 3.302 14 O -0.637 6.637 15 N -0.716 5.716 16 C 0.139 3.861 17 H 0.080 0.920 18 C 0.036 3.964 19 O -0.391 6.391 20 C 0.049 3.951 21 C -0.089 4.089 22 H 0.099 0.901 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.185 4.185 26 H 0.266 0.734 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.410 0.590 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.378 -20.957 -1.698 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.022 3.978 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.519 6.519 15 N -0.376 5.376 16 C 0.033 3.967 17 H 0.098 0.902 18 C -0.042 4.042 19 O -0.309 6.309 20 C -0.027 4.027 21 C -0.109 4.109 22 H 0.117 0.883 23 C -0.172 4.172 24 C -0.200 4.200 25 C -0.223 4.223 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 21.150 -20.022 -1.583 29.167 hybrid contribution -0.996 0.506 -0.126 1.124 sum 20.154 -19.516 -1.709 28.107 Atomic orbital electron populations 1.70056 1.08216 1.28112 1.52793 1.25973 0.95569 1.03402 0.94261 0.85712 0.79537 0.78573 0.79178 1.19256 1.21103 1.17128 1.21471 0.91908 0.93253 1.50117 0.94331 1.19465 0.94032 0.94742 0.96793 1.21465 0.91958 0.98033 1.02187 1.21134 0.93993 0.81528 1.01108 1.45016 1.04985 1.09459 1.79165 1.16177 0.82705 0.83790 0.77564 1.90894 1.56107 1.44970 1.59938 1.45148 1.07606 1.05509 1.79302 1.22039 0.80522 0.97707 0.96466 0.90162 1.23837 0.91954 0.91841 0.96576 1.89155 1.40729 1.27656 1.73408 1.23693 0.98889 0.89964 0.90165 1.22348 0.96849 0.91847 0.99819 0.88281 1.22229 0.97081 1.03855 0.94074 1.23116 1.02877 0.97079 0.96962 1.23051 0.98898 0.97297 1.03018 0.92526 0.96137 0.96234 0.91631 0.91710 0.92812 0.92741 0.75380 0.74590 0.89838 0.91387 0.87022 0.90476 0.85685 0.88572 0.87406 0.87508 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.53 -29.86 9.66 25.60 0.25 -29.61 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 11 C 0.15 4.63 5.67 86.38 0.49 5.12 16 12 N -0.73 -18.32 5.56 -478.53 -2.66 -20.98 16 13 C 0.70 18.91 8.56 179.05 1.53 20.44 16 14 O -0.64 -23.25 16.06 -3.98 -0.06 -23.31 16 15 N -0.72 -13.12 3.77 -452.95 -1.71 -14.83 16 16 C 0.14 2.54 3.32 46.01 0.15 2.69 16 17 H 0.08 1.84 7.67 -2.39 -0.02 1.83 16 18 C 0.04 0.71 7.35 72.49 0.53 1.24 16 19 O -0.39 -7.54 11.65 -148.98 -1.74 -9.28 16 20 C 0.05 0.57 7.18 72.49 0.52 1.09 16 21 C -0.09 -1.04 3.31 -9.78 -0.03 -1.07 16 22 H 0.10 1.10 7.95 -2.39 -0.02 1.09 16 23 C -0.15 -1.33 3.88 -10.79 -0.04 -1.37 16 24 C -0.16 -1.35 10.19 30.62 0.31 -1.04 16 25 C -0.19 -2.01 7.85 30.62 0.24 -1.77 16 26 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 28 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 7.71 8.49 -92.71 -0.79 6.92 16 34 H 0.41 5.36 5.62 -92.71 -0.52 4.84 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.27 8.06 -2.38 -0.02 1.25 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.69 7.63 -2.39 -0.02 0.67 16 39 H 0.13 0.76 7.79 -2.39 -0.02 0.74 16 40 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.22 7.97 -2.39 -0.02 1.20 16 Total: -1.00 -72.31 346.43 0.35 -71.96 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.36 Total: 16.50 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.70 Total: -7.30 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -4.07 Total: -94.80 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.80 Total: -32.59 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -72.31 0.35 -71.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892796723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.295 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds